0.011181
0.000000
0.005473
0.000000
0.026427
0.000000
0.000000
0.000000
0.014843
0.00000
0.00000
0.00000
Faucher, F.
Doublie, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
116.080
90.000
89.440
37.840
75.010
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
17
703
712
10.1016/j.str.2009.03.007
19446526
Crystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction.
2009
100
1
Adjustable focus K-B pair Si plus Pt, Rh coatings
CCD
2008-03-19
MARMOSAIC 300 mm CCD
Double crystal cryo-cooled Si(111)
MAD
M
x-ray
1
0.9794
1.0
0.9796
1.0
0.97166
1.0
23-ID-B
APS
0.9794, 0.9796, 0.97166
SYNCHROTRON
APS BEAMLINE 23-ID-B
25825.529
N-glycosylase/DNA lyase
3.2.2.-, 4.2.99.18
1
man
polymer
18.015
water
153
nat
water
MjOgg; 8-oxoguanine DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase; AP lyase
E.C.3.2.2.-, E.C.4.2.99.18
no
yes
GNHHHHH(MSE)(MSE)LIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDG
FLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAI
IDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK
GNHHHHHMMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREE
LEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRE
LYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1451601, MJ0724, ogg
2190
Methanocaldococcus jannaschii
562
Escherichia coli
Rosetta(DE3)pLysS
plasmid
pET22b
1
2.21
44.27
VAPOR DIFFUSION, HANGING DROP
5.9
PEG 4000 30%, 0.1M sodium citrate, 1% b-Mercaptoethanol, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 285K
285
repository
Initial release
Version format compliance
Database references
1
0
2009-05-19
1
1
2011-07-13
1
2
2012-03-21
N
RCSB
Y
RCSB
2008-12-09
REL
REL
HOH
water
HOH
1
2
HOH
HOH
208
A
HOH
2
2
HOH
HOH
209
A
HOH
3
2
HOH
HOH
210
A
HOH
4
2
HOH
HOH
211
A
HOH
5
2
HOH
HOH
212
A
HOH
6
2
HOH
HOH
213
A
HOH
7
2
HOH
HOH
214
A
HOH
8
2
HOH
HOH
215
A
HOH
9
2
HOH
HOH
216
A
HOH
10
2
HOH
HOH
217
A
HOH
11
2
HOH
HOH
218
A
HOH
12
2
HOH
HOH
219
A
HOH
13
2
HOH
HOH
220
A
HOH
14
2
HOH
HOH
221
A
HOH
15
2
HOH
HOH
222
A
HOH
16
2
HOH
HOH
223
A
HOH
17
2
HOH
HOH
224
A
HOH
18
2
HOH
HOH
225
A
HOH
19
2
HOH
HOH
226
A
HOH
20
2
HOH
HOH
227
A
HOH
21
2
HOH
HOH
228
A
HOH
22
2
HOH
HOH
229
A
HOH
23
2
HOH
HOH
230
A
HOH
24
2
HOH
HOH
231
A
HOH
25
2
HOH
HOH
232
A
HOH
26
2
HOH
HOH
233
A
HOH
27
2
HOH
HOH
234
A
HOH
28
2
HOH
HOH
235
A
HOH
29
2
HOH
HOH
236
A
HOH
30
2
HOH
HOH
237
A
HOH
31
2
HOH
HOH
238
A
HOH
32
2
HOH
HOH
239
A
HOH
33
2
HOH
HOH
240
A
HOH
34
2
HOH
HOH
241
A
HOH
35
2
HOH
HOH
242
A
HOH
36
2
HOH
HOH
243
A
HOH
37
2
HOH
HOH
244
A
HOH
38
2
HOH
HOH
245
A
HOH
39
2
HOH
HOH
246
A
HOH
40
2
HOH
HOH
247
A
HOH
41
2
HOH
HOH
248
A
HOH
42
2
HOH
HOH
249
A
HOH
43
2
HOH
HOH
250
A
HOH
44
2
HOH
HOH
251
A
HOH
45
2
HOH
HOH
252
A
HOH
46
2
HOH
HOH
253
A
HOH
47
2
HOH
HOH
254
A
HOH
48
2
HOH
HOH
255
A
HOH
49
2
HOH
HOH
256
A
HOH
50
2
HOH
HOH
257
A
HOH
51
2
HOH
HOH
258
A
HOH
52
2
HOH
HOH
259
A
HOH
53
2
HOH
HOH
260
A
HOH
54
2
HOH
HOH
261
A
HOH
55
2
HOH
HOH
262
A
HOH
56
2
HOH
HOH
263
A
HOH
57
2
HOH
HOH
264
A
HOH
58
2
HOH
HOH
265
A
HOH
59
2
HOH
HOH
266
A
HOH
60
2
HOH
HOH
267
A
HOH
61
2
HOH
HOH
268
A
HOH
62
2
HOH
HOH
269
A
HOH
63
2
HOH
HOH
270
A
HOH
64
2
HOH
HOH
271
A
HOH
65
2
HOH
HOH
272
A
HOH
66
2
HOH
HOH
273
A
HOH
67
2
HOH
HOH
274
A
HOH
68
2
HOH
HOH
275
A
HOH
69
2
HOH
HOH
276
A
HOH
70
2
HOH
HOH
277
A
HOH
71
2
HOH
HOH
278
A
HOH
72
2
HOH
HOH
279
A
HOH
73
2
HOH
HOH
280
A
HOH
74
2
HOH
HOH
281
A
HOH
75
2
HOH
HOH
282
A
HOH
76
2
HOH
HOH
283
A
HOH
77
2
HOH
HOH
284
A
HOH
78
2
HOH
HOH
285
A
HOH
79
2
HOH
HOH
286
A
HOH
80
2
HOH
HOH
287
A
HOH
81
2
HOH
HOH
288
A
HOH
82
2
HOH
HOH
289
A
HOH
83
2
HOH
HOH
290
A
HOH
84
2
HOH
HOH
291
A
HOH
85
2
HOH
HOH
292
A
HOH
86
2
HOH
HOH
293
A
HOH
87
2
HOH
HOH
294
A
HOH
88
2
HOH
HOH
295
A
HOH
89
2
HOH
HOH
296
A
HOH
90
2
HOH
HOH
297
A
HOH
91
2
HOH
HOH
298
A
HOH
92
2
HOH
HOH
299
A
HOH
93
2
HOH
HOH
300
A
HOH
94
2
HOH
HOH
301
A
HOH
95
2
HOH
HOH
302
A
HOH
96
2
HOH
HOH
303
A
HOH
97
2
HOH
HOH
304
A
HOH
98
2
HOH
HOH
305
A
HOH
99
2
HOH
HOH
306
A
HOH
100
2
HOH
HOH
307
A
HOH
101
2
HOH
HOH
308
A
HOH
102
2
HOH
HOH
309
A
HOH
103
2
HOH
HOH
310
A
HOH
104
2
HOH
HOH
311
A
HOH
105
2
HOH
HOH
312
A
HOH
106
2
HOH
HOH
313
A
HOH
107
2
HOH
HOH
314
A
HOH
108
2
HOH
HOH
315
A
HOH
109
2
HOH
HOH
316
A
HOH
110
2
HOH
HOH
317
A
HOH
111
2
HOH
HOH
318
A
HOH
112
2
HOH
HOH
319
A
HOH
113
2
HOH
HOH
320
A
HOH
114
2
HOH
HOH
321
A
HOH
115
2
HOH
HOH
322
A
HOH
116
2
HOH
HOH
323
A
HOH
117
2
HOH
HOH
324
A
HOH
118
2
HOH
HOH
325
A
HOH
119
2
HOH
HOH
326
A
HOH
120
2
HOH
HOH
327
A
HOH
121
2
HOH
HOH
328
A
HOH
122
2
HOH
HOH
329
A
HOH
123
2
HOH
HOH
330
A
HOH
124
2
HOH
HOH
331
A
HOH
125
2
HOH
HOH
332
A
HOH
126
2
HOH
HOH
333
A
HOH
127
2
HOH
HOH
334
A
HOH
128
2
HOH
HOH
335
A
HOH
129
2
HOH
HOH
336
A
HOH
130
2
HOH
HOH
337
A
HOH
131
2
HOH
HOH
338
A
HOH
132
2
HOH
HOH
339
A
HOH
133
2
HOH
HOH
340
A
HOH
134
2
HOH
HOH
341
A
HOH
135
2
HOH
HOH
342
A
HOH
136
2
HOH
HOH
343
A
HOH
137
2
HOH
HOH
344
A
HOH
138
2
HOH
HOH
345
A
HOH
139
2
HOH
HOH
346
A
HOH
140
2
HOH
HOH
347
A
HOH
141
2
HOH
HOH
348
A
HOH
142
2
HOH
HOH
349
A
HOH
143
2
HOH
HOH
350
A
HOH
144
2
HOH
HOH
351
A
HOH
145
2
HOH
HOH
352
A
HOH
146
2
HOH
HOH
353
A
HOH
147
2
HOH
HOH
354
A
HOH
148
2
HOH
HOH
355
A
HOH
149
2
HOH
HOH
356
A
HOH
150
2
HOH
HOH
357
A
HOH
151
2
HOH
HOH
358
A
HOH
152
2
HOH
HOH
359
A
HOH
153
2
HOH
HOH
360
A
GLY
-6
n
1
GLY
-6
A
ASN
-5
n
2
ASN
-5
A
HIS
-4
n
3
HIS
-4
A
HIS
-3
n
4
HIS
-3
A
HIS
-2
n
5
HIS
-2
A
HIS
-1
n
6
HIS
-1
A
HIS
0
n
7
HIS
0
A
MSE
1
n
8
MSE
1
A
MSE
2
n
9
MSE
2
A
LEU
3
n
10
LEU
3
A
ILE
4
n
11
ILE
4
A
LYS
5
n
12
LYS
5
A
LYS
6
n
13
LYS
6
A
ILE
7
n
14
ILE
7
A
GLU
8
n
15
GLU
8
A
GLU
9
n
16
GLU
9
A
LEU
10
n
17
LEU
10
A
LYS
11
n
18
LYS
11
A
ASN
12
n
19
ASN
12
A
SER
13
n
20
SER
13
A
GLU
14
n
21
GLU
14
A
ILE
15
n
22
ILE
15
A
LYS
16
n
23
LYS
16
A
ASP
17
n
24
ASP
17
A
ILE
18
n
25
ILE
18
A
ILE
19
n
26
ILE
19
A
ASP
20
n
27
ASP
20
A
LYS
21
n
28
LYS
21
A
ARG
22
n
29
ARG
22
A
ILE
23
n
30
ILE
23
A
GLN
24
n
31
GLN
24
A
GLU
25
n
32
GLU
25
A
PHE
26
n
33
PHE
26
A
LYS
27
n
34
LYS
27
A
SER
28
n
35
SER
28
A
PHE
29
n
36
PHE
29
A
LYS
30
n
37
LYS
30
A
ASN
31
n
38
ASN
31
A
LYS
32
n
39
LYS
32
A
SER
33
n
40
SER
33
A
ASN
34
n
41
ASN
34
A
GLU
35
n
42
GLU
35
A
GLU
36
n
43
GLU
36
A
TRP
37
n
44
TRP
37
A
PHE
38
n
45
PHE
38
A
LYS
39
n
46
LYS
39
A
GLU
40
n
47
GLU
40
A
LEU
41
n
48
LEU
41
A
CYS
42
n
49
CYS
42
A
PHE
43
n
50
PHE
43
A
CYS
44
n
51
CYS
44
A
ILE
45
n
52
ILE
45
A
LEU
46
n
53
LEU
46
A
THR
47
n
54
THR
47
A
ALA
48
n
55
ALA
48
A
ASN
49
n
56
ASN
49
A
PHE
50
n
57
PHE
50
A
THR
51
n
58
THR
51
A
ALA
52
n
59
ALA
52
A
GLU
53
n
60
GLU
53
A
GLY
54
n
61
GLY
54
A
GLY
55
n
62
GLY
55
A
ILE
56
n
63
ILE
56
A
ARG
57
n
64
ARG
57
A
ILE
58
n
65
ILE
58
A
GLN
59
n
66
GLN
59
A
LYS
60
n
67
LYS
60
A
GLU
61
n
68
GLU
61
A
ILE
62
n
69
ILE
62
A
GLY
63
n
70
GLY
63
A
ASP
64
n
71
ASP
64
A
GLY
65
n
72
GLY
65
A
PHE
66
n
73
PHE
66
A
LEU
67
n
74
LEU
67
A
THR
68
n
75
THR
68
A
LEU
69
n
76
LEU
69
A
PRO
70
n
77
PRO
70
A
ARG
71
n
78
ARG
71
A
GLU
72
n
79
GLU
72
A
GLU
73
n
80
GLU
73
A
LEU
74
n
81
LEU
74
A
GLU
75
n
82
GLU
75
A
GLU
76
n
83
GLU
76
A
LYS
77
n
84
LYS
77
A
LEU
78
n
85
LEU
78
A
LYS
79
n
86
LYS
79
A
ASN
80
n
87
ASN
80
A
LEU
81
n
88
LEU
81
A
GLY
82
n
89
GLY
82
A
HIS
83
n
90
HIS
83
A
ARG
84
n
91
ARG
84
A
PHE
85
n
92
PHE
85
A
TYR
86
n
93
TYR
86
A
ARG
87
n
94
ARG
87
A
LYS
88
n
95
LYS
88
A
ARG
89
n
96
ARG
89
A
ALA
90
n
97
ALA
90
A
GLU
91
n
98
GLU
91
A
TYR
92
n
99
TYR
92
A
ILE
93
n
100
ILE
93
A
VAL
94
n
101
VAL
94
A
LEU
95
n
102
LEU
95
A
ALA
96
n
103
ALA
96
A
ARG
97
n
104
ARG
97
A
ARG
98
n
105
ARG
98
A
PHE
99
n
106
PHE
99
A
LYS
100
n
107
LYS
100
A
ASN
101
n
108
ASN
101
A
ILE
102
n
109
ILE
102
A
LYS
103
n
110
LYS
103
A
ASP
104
n
111
ASP
104
A
ILE
105
n
112
ILE
105
A
VAL
106
n
113
VAL
106
A
GLU
107
n
114
GLU
107
A
SER
108
n
115
SER
108
A
PHE
109
n
116
PHE
109
A
GLU
110
n
117
GLU
110
A
ASN
111
n
118
ASN
111
A
GLU
112
n
119
GLU
112
A
LYS
113
n
120
LYS
113
A
VAL
114
n
121
VAL
114
A
ALA
115
n
122
ALA
115
A
ARG
116
n
123
ARG
116
A
GLU
117
n
124
GLU
117
A
PHE
118
n
125
PHE
118
A
LEU
119
n
126
LEU
119
A
VAL
120
n
127
VAL
120
A
ARG
121
n
128
ARG
121
A
ASN
122
n
129
ASN
122
A
ILE
123
n
130
ILE
123
A
LYS
124
n
131
LYS
124
A
GLY
125
n
132
GLY
125
A
ILE
126
n
133
ILE
126
A
GLY
127
n
134
GLY
127
A
TYR
128
n
135
TYR
128
A
LYS
129
n
136
LYS
129
A
GLU
130
n
137
GLU
130
A
ALA
131
n
138
ALA
131
A
SER
132
n
139
SER
132
A
HIS
133
n
140
HIS
133
A
PHE
134
n
141
PHE
134
A
LEU
135
n
142
LEU
135
A
ARG
136
n
143
ARG
136
A
ASN
137
n
144
ASN
137
A
VAL
138
n
145
VAL
138
A
GLY
139
n
146
GLY
139
A
TYR
140
n
147
TYR
140
A
ASP
141
n
148
ASP
141
A
ASP
142
n
149
ASP
142
A
VAL
143
n
150
VAL
143
A
ALA
144
n
151
ALA
144
A
ILE
145
n
152
ILE
145
A
ILE
146
n
153
ILE
146
A
ASP
147
n
154
ASP
147
A
ARG
148
n
155
ARG
148
A
HIS
149
n
156
HIS
149
A
ILE
150
n
157
ILE
150
A
LEU
151
n
158
LEU
151
A
ARG
152
n
159
ARG
152
A
GLU
153
n
160
GLU
153
A
LEU
154
n
161
LEU
154
A
TYR
155
n
162
TYR
155
A
GLU
156
n
163
GLU
156
A
ASN
157
n
164
ASN
157
A
ASN
158
n
165
ASN
158
A
TYR
159
n
166
TYR
159
A
ILE
160
n
167
ILE
160
A
ASP
161
n
168
ASP
161
A
GLU
162
n
169
GLU
162
A
ILE
163
n
170
ILE
163
A
PRO
164
n
171
PRO
164
A
LYS
165
n
172
LYS
165
A
THR
166
n
173
THR
166
A
LEU
167
n
174
LEU
167
A
SER
168
n
175
SER
168
A
ARG
169
n
176
ARG
169
A
ARG
170
n
177
ARG
170
A
LYS
171
n
178
LYS
171
A
TYR
172
n
179
TYR
172
A
LEU
173
n
180
LEU
173
A
GLU
174
n
181
GLU
174
A
ILE
175
n
182
ILE
175
A
GLU
176
n
183
GLU
176
A
ASN
177
n
184
ASN
177
A
ILE
178
n
185
ILE
178
A
LEU
179
n
186
LEU
179
A
ARG
180
n
187
ARG
180
A
ASP
181
n
188
ASP
181
A
ILE
182
n
189
ILE
182
A
GLY
183
n
190
GLY
183
A
GLU
184
n
191
GLU
184
A
GLU
185
n
192
GLU
185
A
VAL
186
n
193
VAL
186
A
ASN
187
n
194
ASN
187
A
LEU
188
n
195
LEU
188
A
LYS
189
n
196
LYS
189
A
LEU
190
n
197
LEU
190
A
SER
191
n
198
SER
191
A
GLU
192
n
199
GLU
192
A
LEU
193
n
200
LEU
193
A
ASP
194
n
201
ASP
194
A
LEU
195
n
202
LEU
195
A
TYR
196
n
203
TYR
196
A
ILE
197
n
204
ILE
197
A
TRP
198
n
205
TRP
198
A
TYR
199
n
206
TYR
199
A
LEU
200
n
207
LEU
200
A
ARG
201
n
208
ARG
201
A
THR
202
n
209
THR
202
A
GLY
203
n
210
GLY
203
A
LYS
204
n
211
LYS
204
A
VAL
205
n
212
VAL
205
A
LEU
206
n
213
LEU
206
A
LYS
207
n
214
LYS
207
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
8
MET
A
MSE
2
SELENOMETHIONINE
A
MSE
9
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
246
B
HOH
1
A
HOH
333
B
HOH
1
A
A
OE1
OE1
GLU
GLU
185
185
1.98
1_555
2_656
1
A
LYS
165
79.32
-65.32
1
A
LEU
206
-108.86
-123.28
protein_rep.param
protein.top
water_rep.param
water.top
ligand.param
ligand.top
56.48
24.682
7.20
-3.220
0.000
0.390
4.180
0.000
-0.960
1. The Friedel pairs were used in phasing. 2. BULK SOLVENT MODEL USED in refinement.
0.251
0.009
0.202
0.217
0.222
1.995
19.560
759
15485
15220
5.000
98.500
1.00
0.50
RANDOM
2736238.000
0.000
1
RESTRAINED
THROUGHOUT
Engh & Huber
FLAT MODEL
56.010
0.400
0.280
0.220
5.000
0.240
0.130
1.995
19.560
153
1968
0
0
1815
0.005
1.100
18.200
0.700
1.310
1.500
1.890
2.000
2.330
2.000
3.420
2.500
0.307
0.028
0.227
2.130
116
2310
2426
6
4.800
95.700
14.9
1.995
19.560
3FHF
29750
28691
0
0
0.068
0.084
1
15.43
5.8
96.4
0.203
1.995
2.10
8.23
4041
0.279
1
5.8
92.1
data processing
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
1.2
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
Blu-Ice
data reduction
XDS
data scaling
SCALA
phasing
SHARP
N
N-glycosylase/DNA lyase (E.C.3.2.2.-, E.C.4.2.99.18)
Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine DNA glycosylase (MjOgg)
1
N
N
2
N
N
A
HIS
-3
A
HIS
4
HELX_P
A
ASN
12
A
ASN
19
1
1
16
A
GLU
14
A
GLU
21
HELX_P
A
SER
28
A
SER
35
1
2
15
A
PHE
29
A
PHE
36
HELX_P
A
LYS
32
A
LYS
39
5
3
4
A
SER
33
A
SER
40
HELX_P
A
ALA
48
A
ALA
55
1
4
16
A
THR
51
A
THR
58
HELX_P
A
GLY
63
A
GLY
70
1
5
13
A
ASP
64
A
ASP
71
HELX_P
A
LEU
69
A
LEU
76
1
6
6
A
PRO
70
A
PRO
77
HELX_P
A
LEU
81
A
LEU
88
1
7
12
A
PHE
85
A
PHE
92
HELX_P
A
ARG
97
A
ARG
104
1
8
13
A
ARG
98
A
ARG
105
HELX_P
A
LYS
100
A
LYS
107
5
9
3
A
ASN
101
A
ASN
108
HELX_P
A
PHE
109
A
PHE
116
1
10
9
A
ASN
111
A
ASN
118
HELX_P
A
ILE
123
A
ILE
130
1
11
13
A
GLY
127
A
GLY
134
HELX_P
A
VAL
138
A
VAL
145
1
12
12
A
ASP
147
A
ASP
154
HELX_P
A
ASN
157
A
ASN
164
1
13
11
A
SER
168
A
SER
175
HELX_P
A
VAL
186
A
VAL
193
1
14
19
A
LYS
189
A
LYS
196
HELX_P
A
GLY
203
A
GLY
210
1
15
15
covale
1.326
A
HIS
0
A
C
HIS
7
1_555
A
MSE
1
A
N
MSE
8
1_555
covale
1.328
A
MSE
1
A
C
MSE
8
1_555
A
MSE
2
A
N
MSE
9
1_555
covale
1.326
A
MSE
2
A
C
MSE
9
1_555
A
LEU
3
A
N
LEU
10
1_555
DNA repair, HYDROLASE, LYASE
ogg, helix-hairpin-helix, glycosylase, 8-oxoguanine, 8-oxoG, MjOgg, DNA damage, DNA repair, Glycosidase, Hydrolase, Lyase, Multifunctional enzyme, Nuclease
OGG1_METJA
UNP
1
1
Q58134
MMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKN
LGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNYI
DEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK
1
207
3FHF
1
207
Q58134
A
1
8
214
1
EXPRESSION TAG
GLY
-6
3FHF
A
Q58134
UNP
1
1
EXPRESSION TAG
ASN
-5
3FHF
A
Q58134
UNP
2
1
EXPRESSION TAG
HIS
-4
3FHF
A
Q58134
UNP
3
1
EXPRESSION TAG
HIS
-3
3FHF
A
Q58134
UNP
4
1
EXPRESSION TAG
HIS
-2
3FHF
A
Q58134
UNP
5
1
EXPRESSION TAG
HIS
-1
3FHF
A
Q58134
UNP
6
1
EXPRESSION TAG
HIS
0
3FHF
A
Q58134
UNP
7
5
C 1 2 1