0.006097
0.000000
0.001563
0.000000
0.013881
0.000000
0.000000
0.000000
0.009442
0.00000
0.00000
0.00000
Ho, W.C.
Bauman, J.D.
Himmel, D.M.
Das, K.
Arnold, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
104.38
90.00
164.010
72.040
109.330
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
36
5083
5092
10.1093/nar/gkn464
18676450
Crystal engineering of HIV-1 reverse transcriptase for structure-based drug design.
2008
10.2210/pdb3dlk/pdb
pdb_00003dlk
93.15
1
CCD
ADSC QUANTUM 270
SINGLE WAVELENGTH
M
x-ray
1
1.0
F1
CHESS
SYNCHROTRON
CHESS BEAMLINE F1
63946.211
Reverse transcriptase/ribonuclease H
2.7.7.49, 2.7.7.7
p66 (UNP residues 599 to 1153)
K172A, K173A, C258Q
1
man
polymer
49531.871
p51 RT
2.7.7.7, 3.1.26.4
p51 (UNP residues 605 to 1027)
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
187
nat
water
p66 RT
no
no
MPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRE
LNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAI
SQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKW
TVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYY
DPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE
TWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTEL
QAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
MPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRE
LNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAI
SQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKW
TVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYY
DPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE
TWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTEL
QAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
A
polypeptide(L)
no
no
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
KILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV
LPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY
WQATWIPEWEFVNTPPLVKLWYQ
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
KILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV
LPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY
WQATWIPEWEFVNTPPLVKLWYQ
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
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n
n
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n
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n
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n
n
n
n
n
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n
n
n
n
n
n
n
n
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n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
ISOLATE BH10
sample
gag-pol
11678
Human immunodeficiency virus type 1 BH10
562
Escherichia coli
HIV-1
sample
gag-pol
11678
Human immunodeficiency virus type 1
562
Escherichia coli
1
2.77
55.54
VAPOR DIFFUSION
vapor diffusion, temperature 279.15K
279.15
software
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2008-10-07
1
1
2011-07-13
1
2
2017-10-25
1
3
2021-10-20
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-06-27
REL
REL
SO4
SULFATE ION
HOH
water
2ZD1
PDB entry 2zd1
PDB
experimental model
SO4
1
3
SO4
SO4
556
A
HOH
555
4
HOH
HOH
557
A
HOH
556
4
HOH
HOH
558
A
HOH
557
4
HOH
HOH
559
A
HOH
558
4
HOH
HOH
560
A
HOH
559
4
HOH
HOH
561
A
HOH
560
4
HOH
HOH
562
A
HOH
561
4
HOH
HOH
563
A
HOH
562
4
HOH
HOH
564
A
HOH
563
4
HOH
HOH
565
A
HOH
564
4
HOH
HOH
566
A
HOH
566
4
HOH
HOH
567
A
HOH
567
4
HOH
HOH
568
A
HOH
568
4
HOH
HOH
569
A
HOH
569
4
HOH
HOH
570
A
HOH
570
4
HOH
HOH
571
A
HOH
571
4
HOH
HOH
572
A
HOH
572
4
HOH
HOH
573
A
HOH
573
4
HOH
HOH
574
A
HOH
574
4
HOH
HOH
575
A
HOH
575
4
HOH
HOH
576
A
HOH
576
4
HOH
HOH
577
A
HOH
577
4
HOH
HOH
578
A
HOH
578
4
HOH
HOH
579
A
HOH
579
4
HOH
HOH
580
A
HOH
580
4
HOH
HOH
581
A
HOH
581
4
HOH
HOH
582
A
HOH
582
4
HOH
HOH
583
A
HOH
583
4
HOH
HOH
584
A
HOH
584
4
HOH
HOH
585
A
HOH
585
4
HOH
HOH
586
A
HOH
586
4
HOH
HOH
587
A
HOH
587
4
HOH
HOH
588
A
HOH
588
4
HOH
HOH
589
A
HOH
589
4
HOH
HOH
590
A
HOH
590
4
HOH
HOH
591
A
HOH
591
4
HOH
HOH
592
A
HOH
592
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
656
4
HOH
HOH
655
A
HOH
657
4
HOH
HOH
656
A
HOH
443
4
HOH
HOH
657
A
HOH
429
4
HOH
HOH
429
B
HOH
430
4
HOH
HOH
430
B
HOH
431
4
HOH
HOH
431
B
HOH
432
4
HOH
HOH
432
B
HOH
433
4
HOH
HOH
433
B
HOH
434
4
HOH
HOH
434
B
HOH
435
4
HOH
HOH
435
B
HOH
436
4
HOH
HOH
436
B
HOH
437
4
HOH
HOH
437
B
HOH
438
4
HOH
HOH
438
B
HOH
439
4
HOH
HOH
439
B
HOH
440
4
HOH
HOH
440
B
HOH
441
4
HOH
HOH
441
B
HOH
442
4
HOH
HOH
442
B
HOH
444
4
HOH
HOH
444
B
HOH
445
4
HOH
HOH
445
B
HOH
446
4
HOH
HOH
446
B
HOH
447
4
HOH
HOH
447
B
HOH
448
4
HOH
HOH
448
B
HOH
449
4
HOH
HOH
449
B
HOH
450
4
HOH
HOH
450
B
HOH
451
4
HOH
HOH
451
B
HOH
452
4
HOH
HOH
452
B
HOH
453
4
HOH
HOH
453
B
HOH
454
4
HOH
HOH
454
B
HOH
455
4
HOH
HOH
455
B
HOH
456
4
HOH
HOH
456
B
HOH
457
4
HOH
HOH
457
B
HOH
458
4
HOH
HOH
458
B
HOH
459
4
HOH
HOH
459
B
HOH
460
4
HOH
HOH
460
B
HOH
461
4
HOH
HOH
461
B
HOH
462
4
HOH
HOH
462
B
HOH
463
4
HOH
HOH
463
B
HOH
464
4
HOH
HOH
464
B
HOH
465
4
HOH
HOH
465
B
HOH
466
4
HOH
HOH
466
B
HOH
467
4
HOH
HOH
467
B
HOH
468
4
HOH
HOH
468
B
HOH
469
4
HOH
HOH
469
B
HOH
470
4
HOH
HOH
470
B
HOH
471
4
HOH
HOH
471
B
HOH
472
4
HOH
HOH
472
B
HOH
473
4
HOH
HOH
473
B
HOH
474
4
HOH
HOH
474
B
HOH
475
4
HOH
HOH
475
B
HOH
476
4
HOH
HOH
476
B
HOH
477
4
HOH
HOH
477
B
HOH
478
4
HOH
HOH
478
B
HOH
479
4
HOH
HOH
479
B
HOH
480
4
HOH
HOH
480
B
HOH
481
4
HOH
HOH
481
B
HOH
482
4
HOH
HOH
482
B
HOH
483
4
HOH
HOH
483
B
HOH
484
4
HOH
HOH
484
B
HOH
485
4
HOH
HOH
485
B
HOH
486
4
HOH
HOH
486
B
HOH
487
4
HOH
HOH
487
B
HOH
488
4
HOH
HOH
488
B
HOH
489
4
HOH
HOH
489
B
HOH
490
4
HOH
HOH
490
B
HOH
491
4
HOH
HOH
491
B
HOH
492
4
HOH
HOH
492
B
HOH
493
4
HOH
HOH
493
B
HOH
494
4
HOH
HOH
494
B
HOH
495
4
HOH
HOH
495
B
HOH
496
4
HOH
HOH
496
B
HOH
497
4
HOH
HOH
497
B
HOH
498
4
HOH
HOH
498
B
HOH
499
4
HOH
HOH
499
B
HOH
500
4
HOH
HOH
500
B
HOH
501
4
HOH
HOH
501
B
HOH
502
4
HOH
HOH
502
B
HOH
503
4
HOH
HOH
503
B
HOH
504
4
HOH
HOH
504
B
HOH
505
4
HOH
HOH
505
B
HOH
506
4
HOH
HOH
506
B
HOH
507
4
HOH
HOH
507
B
HOH
508
4
HOH
HOH
508
B
HOH
509
4
HOH
HOH
509
B
HOH
510
4
HOH
HOH
510
B
HOH
511
4
HOH
HOH
511
B
HOH
512
4
HOH
HOH
512
B
HOH
513
4
HOH
HOH
513
B
HOH
565
4
HOH
HOH
565
B
HOH
593
4
HOH
HOH
593
B
n
1
0
A
n
2
1
A
n
3
2
A
SER
3
n
4
SER
3
A
PRO
4
n
5
PRO
4
A
ILE
5
n
6
ILE
5
A
GLU
6
n
7
GLU
6
A
THR
7
n
8
THR
7
A
VAL
8
n
9
VAL
8
A
PRO
9
n
10
PRO
9
A
VAL
10
n
11
VAL
10
A
LYS
11
n
12
LYS
11
A
LEU
12
n
13
LEU
12
A
LYS
13
n
14
LYS
13
A
PRO
14
n
15
PRO
14
A
GLY
15
n
16
GLY
15
A
MET
16
n
17
MET
16
A
ASP
17
n
18
ASP
17
A
GLY
18
n
19
GLY
18
A
PRO
19
n
20
PRO
19
A
LYS
20
n
21
LYS
20
A
VAL
21
n
22
VAL
21
A
LYS
22
n
23
LYS
22
A
GLN
23
n
24
GLN
23
A
TRP
24
n
25
TRP
24
A
PRO
25
n
26
PRO
25
A
LEU
26
n
27
LEU
26
A
THR
27
n
28
THR
27
A
GLU
28
n
29
GLU
28
A
GLU
29
n
30
GLU
29
A
LYS
30
n
31
LYS
30
A
ILE
31
n
32
ILE
31
A
LYS
32
n
33
LYS
32
A
ALA
33
n
34
ALA
33
A
LEU
34
n
35
LEU
34
A
VAL
35
n
36
VAL
35
A
GLU
36
n
37
GLU
36
A
ILE
37
n
38
ILE
37
A
CYS
38
n
39
CYS
38
A
THR
39
n
40
THR
39
A
GLU
40
n
41
GLU
40
A
MET
41
n
42
MET
41
A
GLU
42
n
43
GLU
42
A
LYS
43
n
44
LYS
43
A
GLU
44
n
45
GLU
44
A
GLY
45
n
46
GLY
45
A
LYS
46
n
47
LYS
46
A
ILE
47
n
48
ILE
47
A
SER
48
n
49
SER
48
A
LYS
49
n
50
LYS
49
A
ILE
50
n
51
ILE
50
A
GLY
51
n
52
GLY
51
A
PRO
52
n
53
PRO
52
A
GLU
53
n
54
GLU
53
A
ASN
54
n
55
ASN
54
A
PRO
55
n
56
PRO
55
A
TYR
56
n
57
TYR
56
A
ASN
57
n
58
ASN
57
A
THR
58
n
59
THR
58
A
PRO
59
n
60
PRO
59
A
VAL
60
n
61
VAL
60
A
PHE
61
n
62
PHE
61
A
ALA
62
n
63
ALA
62
A
ILE
63
n
64
ILE
63
A
LYS
64
n
65
LYS
64
A
LYS
65
n
66
LYS
65
A
LYS
66
n
67
LYS
66
A
ASP
67
n
68
ASP
67
A
SER
68
n
69
SER
68
A
THR
69
n
70
THR
69
A
LYS
70
n
71
LYS
70
A
TRP
71
n
72
TRP
71
A
ARG
72
n
73
ARG
72
A
LYS
73
n
74
LYS
73
A
LEU
74
n
75
LEU
74
A
VAL
75
n
76
VAL
75
A
ASP
76
n
77
ASP
76
A
PHE
77
n
78
PHE
77
A
ARG
78
n
79
ARG
78
A
GLU
79
n
80
GLU
79
A
LEU
80
n
81
LEU
80
A
ASN
81
n
82
ASN
81
A
LYS
82
n
83
LYS
82
A
ARG
83
n
84
ARG
83
A
THR
84
n
85
THR
84
A
GLN
85
n
86
GLN
85
A
ASP
86
n
87
ASP
86
A
PHE
87
n
88
PHE
87
A
TRP
88
n
89
TRP
88
A
GLU
89
n
90
GLU
89
A
VAL
90
n
91
VAL
90
A
GLN
91
n
92
GLN
91
A
LEU
92
n
93
LEU
92
A
GLY
93
n
94
GLY
93
A
ILE
94
n
95
ILE
94
A
PRO
95
n
96
PRO
95
A
HIS
96
n
97
HIS
96
A
PRO
97
n
98
PRO
97
A
ALA
98
n
99
ALA
98
A
GLY
99
n
100
GLY
99
A
LEU
100
n
101
LEU
100
A
LYS
101
n
102
LYS
101
A
LYS
102
n
103
LYS
102
A
LYS
103
n
104
LYS
103
A
LYS
104
n
105
LYS
104
A
SER
105
n
106
SER
105
A
VAL
106
n
107
VAL
106
A
THR
107
n
108
THR
107
A
VAL
108
n
109
VAL
108
A
LEU
109
n
110
LEU
109
A
ASP
110
n
111
ASP
110
A
VAL
111
n
112
VAL
111
A
GLY
112
n
113
GLY
112
A
ASP
113
n
114
ASP
113
A
ALA
114
n
115
ALA
114
A
TYR
115
n
116
TYR
115
A
PHE
116
n
117
PHE
116
A
SER
117
n
118
SER
117
A
VAL
118
n
119
VAL
118
A
PRO
119
n
120
PRO
119
A
LEU
120
n
121
LEU
120
A
ASP
121
n
122
ASP
121
A
GLU
122
n
123
GLU
122
A
ASP
123
n
124
ASP
123
A
PHE
124
n
125
PHE
124
A
ARG
125
n
126
ARG
125
A
LYS
126
n
127
LYS
126
A
TYR
127
n
128
TYR
127
A
THR
128
n
129
THR
128
A
ALA
129
n
130
ALA
129
A
PHE
130
n
131
PHE
130
A
THR
131
n
132
THR
131
A
ILE
132
n
133
ILE
132
A
PRO
133
n
134
PRO
133
A
SER
134
n
135
SER
134
A
ILE
135
n
136
ILE
135
A
ASN
136
n
137
ASN
136
A
ASN
137
n
138
ASN
137
A
GLU
138
n
139
GLU
138
A
THR
139
n
140
THR
139
A
PRO
140
n
141
PRO
140
A
GLY
141
n
142
GLY
141
A
ILE
142
n
143
ILE
142
A
ARG
143
n
144
ARG
143
A
TYR
144
n
145
TYR
144
A
GLN
145
n
146
GLN
145
A
TYR
146
n
147
TYR
146
A
ASN
147
n
148
ASN
147
A
VAL
148
n
149
VAL
148
A
LEU
149
n
150
LEU
149
A
PRO
150
n
151
PRO
150
A
GLN
151
n
152
GLN
151
A
GLY
152
n
153
GLY
152
A
TRP
153
n
154
TRP
153
A
LYS
154
n
155
LYS
154
A
GLY
155
n
156
GLY
155
A
SER
156
n
157
SER
156
A
PRO
157
n
158
PRO
157
A
ALA
158
n
159
ALA
158
A
ILE
159
n
160
ILE
159
A
SER
160
n
161
SER
160
A
GLN
161
n
162
GLN
161
A
SER
162
n
163
SER
162
A
SER
163
n
164
SER
163
A
MET
164
n
165
MET
164
A
THR
165
n
166
THR
165
A
LYS
166
n
167
LYS
166
A
ILE
167
n
168
ILE
167
A
LEU
168
n
169
LEU
168
A
GLU
169
n
170
GLU
169
A
PRO
170
n
171
PRO
170
A
PHE
171
n
172
PHE
171
A
LYS
172
n
173
LYS
172
A
LYS
173
n
174
LYS
173
A
GLN
174
n
175
GLN
174
A
ASN
175
n
176
ASN
175
A
PRO
176
n
177
PRO
176
A
ASP
177
n
178
ASP
177
A
ILE
178
n
179
ILE
178
A
VAL
179
n
180
VAL
179
A
ILE
180
n
181
ILE
180
A
TYR
181
n
182
TYR
181
A
GLN
182
n
183
GLN
182
A
TYR
183
n
184
TYR
183
A
MET
184
n
185
MET
184
A
ASP
185
n
186
ASP
185
A
ASP
186
n
187
ASP
186
A
LEU
187
n
188
LEU
187
A
TYR
188
n
189
TYR
188
A
VAL
189
n
190
VAL
189
A
GLY
190
n
191
GLY
190
A
SER
191
n
192
SER
191
A
ASP
192
n
193
ASP
192
A
LEU
193
n
194
LEU
193
A
GLU
194
n
195
GLU
194
A
ILE
195
n
196
ILE
195
A
GLY
196
n
197
GLY
196
A
GLN
197
n
198
GLN
197
A
HIS
198
n
199
HIS
198
A
ARG
199
n
200
ARG
199
A
THR
200
n
201
THR
200
A
LYS
201
n
202
LYS
201
A
ILE
202
n
203
ILE
202
A
GLU
203
n
204
GLU
203
A
GLU
204
n
205
GLU
204
A
LEU
205
n
206
LEU
205
A
ARG
206
n
207
ARG
206
A
GLN
207
n
208
GLN
207
A
HIS
208
n
209
HIS
208
A
LEU
209
n
210
LEU
209
A
LEU
210
n
211
LEU
210
A
ARG
211
n
212
ARG
211
A
TRP
212
n
213
TRP
212
A
GLY
213
n
214
GLY
213
A
LEU
214
n
215
LEU
214
A
THR
215
n
216
THR
215
A
THR
216
n
217
THR
216
A
PRO
217
n
218
PRO
217
A
ASP
218
n
219
ASP
218
A
LYS
219
n
220
LYS
219
A
LYS
220
n
221
LYS
220
A
HIS
221
n
222
HIS
221
A
GLN
222
n
223
GLN
222
A
LYS
223
n
224
LYS
223
A
GLU
224
n
225
GLU
224
A
PRO
225
n
226
PRO
225
A
PRO
226
n
227
PRO
226
A
PHE
227
n
228
PHE
227
A
LEU
228
n
229
LEU
228
A
TRP
229
n
230
TRP
229
A
MET
230
n
231
MET
230
A
GLY
231
n
232
GLY
231
A
TYR
232
n
233
TYR
232
A
GLU
233
n
234
GLU
233
A
LEU
234
n
235
LEU
234
A
HIS
235
n
236
HIS
235
A
PRO
236
n
237
PRO
236
A
ASP
237
n
238
ASP
237
A
LYS
238
n
239
LYS
238
A
TRP
239
n
240
TRP
239
A
THR
240
n
241
THR
240
A
VAL
241
n
242
VAL
241
A
GLN
242
n
243
GLN
242
A
PRO
243
n
244
PRO
243
A
ILE
244
n
245
ILE
244
A
VAL
245
n
246
VAL
245
A
LEU
246
n
247
LEU
246
A
PRO
247
n
248
PRO
247
A
GLU
248
n
249
GLU
248
A
LYS
249
n
250
LYS
249
A
ASP
250
n
251
ASP
250
A
SER
251
n
252
SER
251
A
TRP
252
n
253
TRP
252
A
THR
253
n
254
THR
253
A
VAL
254
n
255
VAL
254
A
ASN
255
n
256
ASN
255
A
ASP
256
n
257
ASP
256
A
ILE
257
n
258
ILE
257
A
GLN
258
n
259
GLN
258
A
LYS
259
n
260
LYS
259
A
LEU
260
n
261
LEU
260
A
VAL
261
n
262
VAL
261
A
GLY
262
n
263
GLY
262
A
LYS
263
n
264
LYS
263
A
LEU
264
n
265
LEU
264
A
ASN
265
n
266
ASN
265
A
TRP
266
n
267
TRP
266
A
ALA
267
n
268
ALA
267
A
SER
268
n
269
SER
268
A
GLN
269
n
270
GLN
269
A
ILE
270
n
271
ILE
270
A
TYR
271
n
272
TYR
271
A
PRO
272
n
273
PRO
272
A
GLY
273
n
274
GLY
273
A
ILE
274
n
275
ILE
274
A
LYS
275
n
276
LYS
275
A
VAL
276
n
277
VAL
276
A
ARG
277
n
278
ARG
277
A
GLN
278
n
279
GLN
278
A
LEU
279
n
280
LEU
279
A
SER
280
n
281
SER
280
A
LYS
281
n
282
LYS
281
A
LEU
282
n
283
LEU
282
A
LEU
283
n
284
LEU
283
A
ARG
284
n
285
ARG
284
A
GLY
285
n
286
GLY
285
A
THR
286
n
287
THR
286
A
LYS
287
n
288
LYS
287
A
ALA
288
n
289
ALA
288
A
LEU
289
n
290
LEU
289
A
THR
290
n
291
THR
290
A
GLU
291
n
292
GLU
291
A
VAL
292
n
293
VAL
292
A
ILE
293
n
294
ILE
293
A
PRO
294
n
295
PRO
294
A
LEU
295
n
296
LEU
295
A
THR
296
n
297
THR
296
A
GLU
297
n
298
GLU
297
A
GLU
298
n
299
GLU
298
A
ALA
299
n
300
ALA
299
A
GLU
300
n
301
GLU
300
A
LEU
301
n
302
LEU
301
A
GLU
302
n
303
GLU
302
A
LEU
303
n
304
LEU
303
A
ALA
304
n
305
ALA
304
A
GLU
305
n
306
GLU
305
A
ASN
306
n
307
ASN
306
A
ARG
307
n
308
ARG
307
A
GLU
308
n
309
GLU
308
A
ILE
309
n
310
ILE
309
A
LEU
310
n
311
LEU
310
A
LYS
311
n
312
LYS
311
A
GLU
312
n
313
GLU
312
A
PRO
313
n
314
PRO
313
A
VAL
314
n
315
VAL
314
A
HIS
315
n
316
HIS
315
A
GLY
316
n
317
GLY
316
A
VAL
317
n
318
VAL
317
A
TYR
318
n
319
TYR
318
A
TYR
319
n
320
TYR
319
A
ASP
320
n
321
ASP
320
A
PRO
321
n
322
PRO
321
A
SER
322
n
323
SER
322
A
LYS
323
n
324
LYS
323
A
ASP
324
n
325
ASP
324
A
LEU
325
n
326
LEU
325
A
ILE
326
n
327
ILE
326
A
ALA
327
n
328
ALA
327
A
GLU
328
n
329
GLU
328
A
ILE
329
n
330
ILE
329
A
GLN
330
n
331
GLN
330
A
LYS
331
n
332
LYS
331
A
GLN
332
n
333
GLN
332
A
GLY
333
n
334
GLY
333
A
GLN
334
n
335
GLN
334
A
GLY
335
n
336
GLY
335
A
GLN
336
n
337
GLN
336
A
TRP
337
n
338
TRP
337
A
THR
338
n
339
THR
338
A
TYR
339
n
340
TYR
339
A
GLN
340
n
341
GLN
340
A
ILE
341
n
342
ILE
341
A
TYR
342
n
343
TYR
342
A
GLN
343
n
344
GLN
343
A
GLU
344
n
345
GLU
344
A
PRO
345
n
346
PRO
345
A
PHE
346
n
347
PHE
346
A
LYS
347
n
348
LYS
347
A
ASN
348
n
349
ASN
348
A
LEU
349
n
350
LEU
349
A
LYS
350
n
351
LYS
350
A
THR
351
n
352
THR
351
A
GLY
352
n
353
GLY
352
A
LYS
353
n
354
LYS
353
A
TYR
354
n
355
TYR
354
A
ALA
355
n
356
ALA
355
A
ARG
356
n
357
ARG
356
A
MET
357
n
358
MET
357
A
ARG
358
n
359
ARG
358
A
GLY
359
n
360
GLY
359
A
ALA
360
n
361
ALA
360
A
HIS
361
n
362
HIS
361
A
THR
362
n
363
THR
362
A
ASN
363
n
364
ASN
363
A
ASP
364
n
365
ASP
364
A
VAL
365
n
366
VAL
365
A
LYS
366
n
367
LYS
366
A
GLN
367
n
368
GLN
367
A
LEU
368
n
369
LEU
368
A
THR
369
n
370
THR
369
A
GLU
370
n
371
GLU
370
A
ALA
371
n
372
ALA
371
A
VAL
372
n
373
VAL
372
A
GLN
373
n
374
GLN
373
A
LYS
374
n
375
LYS
374
A
ILE
375
n
376
ILE
375
A
THR
376
n
377
THR
376
A
THR
377
n
378
THR
377
A
GLU
378
n
379
GLU
378
A
SER
379
n
380
SER
379
A
ILE
380
n
381
ILE
380
A
VAL
381
n
382
VAL
381
A
ILE
382
n
383
ILE
382
A
TRP
383
n
384
TRP
383
A
GLY
384
n
385
GLY
384
A
LYS
385
n
386
LYS
385
A
THR
386
n
387
THR
386
A
PRO
387
n
388
PRO
387
A
LYS
388
n
389
LYS
388
A
PHE
389
n
390
PHE
389
A
LYS
390
n
391
LYS
390
A
LEU
391
n
392
LEU
391
A
PRO
392
n
393
PRO
392
A
ILE
393
n
394
ILE
393
A
GLN
394
n
395
GLN
394
A
LYS
395
n
396
LYS
395
A
GLU
396
n
397
GLU
396
A
THR
397
n
398
THR
397
A
TRP
398
n
399
TRP
398
A
GLU
399
n
400
GLU
399
A
THR
400
n
401
THR
400
A
TRP
401
n
402
TRP
401
A
TRP
402
n
403
TRP
402
A
THR
403
n
404
THR
403
A
GLU
404
n
405
GLU
404
A
TYR
405
n
406
TYR
405
A
TRP
406
n
407
TRP
406
A
GLN
407
n
408
GLN
407
A
ALA
408
n
409
ALA
408
A
THR
409
n
410
THR
409
A
TRP
410
n
411
TRP
410
A
ILE
411
n
412
ILE
411
A
PRO
412
n
413
PRO
412
A
GLU
413
n
414
GLU
413
A
TRP
414
n
415
TRP
414
A
GLU
415
n
416
GLU
415
A
PHE
416
n
417
PHE
416
A
VAL
417
n
418
VAL
417
A
ASN
418
n
419
ASN
418
A
THR
419
n
420
THR
419
A
PRO
420
n
421
PRO
420
A
PRO
421
n
422
PRO
421
A
LEU
422
n
423
LEU
422
A
VAL
423
n
424
VAL
423
A
LYS
424
n
425
LYS
424
A
LEU
425
n
426
LEU
425
A
TRP
426
n
427
TRP
426
A
TYR
427
n
428
TYR
427
A
GLN
428
n
429
GLN
428
A
LEU
429
n
430
LEU
429
A
GLU
430
n
431
GLU
430
A
LYS
431
n
432
LYS
431
A
GLU
432
n
433
GLU
432
A
PRO
433
n
434
PRO
433
A
ILE
434
n
435
ILE
434
A
VAL
435
n
436
VAL
435
A
GLY
436
n
437
GLY
436
A
ALA
437
n
438
ALA
437
A
GLU
438
n
439
GLU
438
A
THR
439
n
440
THR
439
A
PHE
440
n
441
PHE
440
A
TYR
441
n
442
TYR
441
A
VAL
442
n
443
VAL
442
A
ASP
443
n
444
ASP
443
A
GLY
444
n
445
GLY
444
A
ALA
445
n
446
ALA
445
A
ALA
446
n
447
ALA
446
A
ASN
447
n
448
ASN
447
A
ARG
448
n
449
ARG
448
A
GLU
449
n
450
GLU
449
A
THR
450
n
451
THR
450
A
LYS
451
n
452
LYS
451
A
LEU
452
n
453
LEU
452
A
GLY
453
n
454
GLY
453
A
LYS
454
n
455
LYS
454
A
ALA
455
n
456
ALA
455
A
GLY
456
n
457
GLY
456
A
TYR
457
n
458
TYR
457
A
VAL
458
n
459
VAL
458
A
THR
459
n
460
THR
459
A
ASN
460
n
461
ASN
460
A
LYS
461
n
462
LYS
461
A
GLY
462
n
463
GLY
462
A
ARG
463
n
464
ARG
463
A
GLN
464
n
465
GLN
464
A
LYS
465
n
466
LYS
465
A
VAL
466
n
467
VAL
466
A
VAL
467
n
468
VAL
467
A
PRO
468
n
469
PRO
468
A
LEU
469
n
470
LEU
469
A
THR
470
n
471
THR
470
A
ASN
471
n
472
ASN
471
A
THR
472
n
473
THR
472
A
THR
473
n
474
THR
473
A
ASN
474
n
475
ASN
474
A
GLN
475
n
476
GLN
475
A
LYS
476
n
477
LYS
476
A
THR
477
n
478
THR
477
A
GLU
478
n
479
GLU
478
A
LEU
479
n
480
LEU
479
A
GLN
480
n
481
GLN
480
A
ALA
481
n
482
ALA
481
A
ILE
482
n
483
ILE
482
A
TYR
483
n
484
TYR
483
A
LEU
484
n
485
LEU
484
A
ALA
485
n
486
ALA
485
A
LEU
486
n
487
LEU
486
A
GLN
487
n
488
GLN
487
A
ASP
488
n
489
ASP
488
A
SER
489
n
490
SER
489
A
GLY
490
n
491
GLY
490
A
LEU
491
n
492
LEU
491
A
GLU
492
n
493
GLU
492
A
VAL
493
n
494
VAL
493
A
ASN
494
n
495
ASN
494
A
ILE
495
n
496
ILE
495
A
VAL
496
n
497
VAL
496
A
THR
497
n
498
THR
497
A
ASP
498
n
499
ASP
498
A
SER
499
n
500
SER
499
A
GLN
500
n
501
GLN
500
A
TYR
501
n
502
TYR
501
A
ALA
502
n
503
ALA
502
A
LEU
503
n
504
LEU
503
A
GLY
504
n
505
GLY
504
A
ILE
505
n
506
ILE
505
A
ILE
506
n
507
ILE
506
A
GLN
507
n
508
GLN
507
A
ALA
508
n
509
ALA
508
A
GLN
509
n
510
GLN
509
A
PRO
510
n
511
PRO
510
A
ASP
511
n
512
ASP
511
A
LYS
512
n
513
LYS
512
A
SER
513
n
514
SER
513
A
GLU
514
n
515
GLU
514
A
SER
515
n
516
SER
515
A
GLU
516
n
517
GLU
516
A
LEU
517
n
518
LEU
517
A
VAL
518
n
519
VAL
518
A
ASN
519
n
520
ASN
519
A
GLN
520
n
521
GLN
520
A
ILE
521
n
522
ILE
521
A
ILE
522
n
523
ILE
522
A
GLU
523
n
524
GLU
523
A
GLN
524
n
525
GLN
524
A
LEU
525
n
526
LEU
525
A
ILE
526
n
527
ILE
526
A
LYS
527
n
528
LYS
527
A
LYS
528
n
529
LYS
528
A
GLU
529
n
530
GLU
529
A
LYS
530
n
531
LYS
530
A
VAL
531
n
532
VAL
531
A
TYR
532
n
533
TYR
532
A
LEU
533
n
534
LEU
533
A
ALA
534
n
535
ALA
534
A
TRP
535
n
536
TRP
535
A
VAL
536
n
537
VAL
536
A
PRO
537
n
538
PRO
537
A
ALA
538
n
539
ALA
538
A
HIS
539
n
540
HIS
539
A
LYS
540
n
541
LYS
540
A
GLY
541
n
542
GLY
541
A
ILE
542
n
543
ILE
542
A
GLY
543
n
544
GLY
543
A
GLY
544
n
545
GLY
544
A
ASN
545
n
546
ASN
545
A
GLU
546
n
547
GLU
546
A
GLN
547
n
548
GLN
547
A
VAL
548
n
549
VAL
548
A
ASP
549
n
550
ASP
549
A
LYS
550
n
551
LYS
550
A
LEU
551
n
552
LEU
551
A
VAL
552
n
553
VAL
552
A
SER
553
n
554
SER
553
A
ALA
554
n
555
ALA
554
A
n
556
555
A
GLU
6
n
1
GLU
6
B
THR
7
n
2
THR
7
B
VAL
8
n
3
VAL
8
B
PRO
9
n
4
PRO
9
B
VAL
10
n
5
VAL
10
B
LYS
11
n
6
LYS
11
B
LEU
12
n
7
LEU
12
B
LYS
13
n
8
LYS
13
B
PRO
14
n
9
PRO
14
B
GLY
15
n
10
GLY
15
B
MET
16
n
11
MET
16
B
ASP
17
n
12
ASP
17
B
GLY
18
n
13
GLY
18
B
PRO
19
n
14
PRO
19
B
LYS
20
n
15
LYS
20
B
VAL
21
n
16
VAL
21
B
LYS
22
n
17
LYS
22
B
GLN
23
n
18
GLN
23
B
TRP
24
n
19
TRP
24
B
PRO
25
n
20
PRO
25
B
LEU
26
n
21
LEU
26
B
THR
27
n
22
THR
27
B
GLU
28
n
23
GLU
28
B
GLU
29
n
24
GLU
29
B
LYS
30
n
25
LYS
30
B
ILE
31
n
26
ILE
31
B
LYS
32
n
27
LYS
32
B
ALA
33
n
28
ALA
33
B
LEU
34
n
29
LEU
34
B
VAL
35
n
30
VAL
35
B
GLU
36
n
31
GLU
36
B
ILE
37
n
32
ILE
37
B
CYS
38
n
33
CYS
38
B
THR
39
n
34
THR
39
B
GLU
40
n
35
GLU
40
B
MET
41
n
36
MET
41
B
GLU
42
n
37
GLU
42
B
LYS
43
n
38
LYS
43
B
GLU
44
n
39
GLU
44
B
GLY
45
n
40
GLY
45
B
LYS
46
n
41
LYS
46
B
ILE
47
n
42
ILE
47
B
SER
48
n
43
SER
48
B
LYS
49
n
44
LYS
49
B
ILE
50
n
45
ILE
50
B
GLY
51
n
46
GLY
51
B
PRO
52
n
47
PRO
52
B
GLU
53
n
48
GLU
53
B
ASN
54
n
49
ASN
54
B
PRO
55
n
50
PRO
55
B
TYR
56
n
51
TYR
56
B
ASN
57
n
52
ASN
57
B
THR
58
n
53
THR
58
B
PRO
59
n
54
PRO
59
B
VAL
60
n
55
VAL
60
B
PHE
61
n
56
PHE
61
B
ALA
62
n
57
ALA
62
B
ILE
63
n
58
ILE
63
B
LYS
64
n
59
LYS
64
B
LYS
65
n
60
LYS
65
B
LYS
66
n
61
LYS
66
B
ASP
67
n
62
ASP
67
B
SER
68
n
63
SER
68
B
THR
69
n
64
THR
69
B
LYS
70
n
65
LYS
70
B
TRP
71
n
66
TRP
71
B
ARG
72
n
67
ARG
72
B
LYS
73
n
68
LYS
73
B
LEU
74
n
69
LEU
74
B
VAL
75
n
70
VAL
75
B
ASP
76
n
71
ASP
76
B
PHE
77
n
72
PHE
77
B
ARG
78
n
73
ARG
78
B
GLU
79
n
74
GLU
79
B
LEU
80
n
75
LEU
80
B
ASN
81
n
76
ASN
81
B
LYS
82
n
77
LYS
82
B
ARG
83
n
78
ARG
83
B
THR
84
n
79
THR
84
B
GLN
85
n
80
GLN
85
B
ASP
86
n
81
ASP
86
B
PHE
87
n
82
PHE
87
B
TRP
88
n
83
TRP
88
B
GLU
89
n
84
GLU
89
B
n
85
90
B
n
86
91
B
LEU
92
n
87
LEU
92
B
GLY
93
n
88
GLY
93
B
ILE
94
n
89
ILE
94
B
PRO
95
n
90
PRO
95
B
HIS
96
n
91
HIS
96
B
PRO
97
n
92
PRO
97
B
ALA
98
n
93
ALA
98
B
GLY
99
n
94
GLY
99
B
LEU
100
n
95
LEU
100
B
LYS
101
n
96
LYS
101
B
LYS
102
n
97
LYS
102
B
LYS
103
n
98
LYS
103
B
LYS
104
n
99
LYS
104
B
SER
105
n
100
SER
105
B
VAL
106
n
101
VAL
106
B
THR
107
n
102
THR
107
B
VAL
108
n
103
VAL
108
B
LEU
109
n
104
LEU
109
B
ASP
110
n
105
ASP
110
B
VAL
111
n
106
VAL
111
B
GLY
112
n
107
GLY
112
B
ASP
113
n
108
ASP
113
B
ALA
114
n
109
ALA
114
B
TYR
115
n
110
TYR
115
B
PHE
116
n
111
PHE
116
B
SER
117
n
112
SER
117
B
VAL
118
n
113
VAL
118
B
PRO
119
n
114
PRO
119
B
LEU
120
n
115
LEU
120
B
ASP
121
n
116
ASP
121
B
GLU
122
n
117
GLU
122
B
ASP
123
n
118
ASP
123
B
PHE
124
n
119
PHE
124
B
ARG
125
n
120
ARG
125
B
LYS
126
n
121
LYS
126
B
TYR
127
n
122
TYR
127
B
THR
128
n
123
THR
128
B
ALA
129
n
124
ALA
129
B
PHE
130
n
125
PHE
130
B
THR
131
n
126
THR
131
B
ILE
132
n
127
ILE
132
B
PRO
133
n
128
PRO
133
B
SER
134
n
129
SER
134
B
ILE
135
n
130
ILE
135
B
ASN
136
n
131
ASN
136
B
ASN
137
n
132
ASN
137
B
GLU
138
n
133
GLU
138
B
THR
139
n
134
THR
139
B
PRO
140
n
135
PRO
140
B
GLY
141
n
136
GLY
141
B
ILE
142
n
137
ILE
142
B
ARG
143
n
138
ARG
143
B
TYR
144
n
139
TYR
144
B
GLN
145
n
140
GLN
145
B
TYR
146
n
141
TYR
146
B
ASN
147
n
142
ASN
147
B
VAL
148
n
143
VAL
148
B
LEU
149
n
144
LEU
149
B
PRO
150
n
145
PRO
150
B
GLN
151
n
146
GLN
151
B
GLY
152
n
147
GLY
152
B
TRP
153
n
148
TRP
153
B
LYS
154
n
149
LYS
154
B
GLY
155
n
150
GLY
155
B
SER
156
n
151
SER
156
B
PRO
157
n
152
PRO
157
B
ALA
158
n
153
ALA
158
B
ILE
159
n
154
ILE
159
B
PHE
160
n
155
PHE
160
B
GLN
161
n
156
GLN
161
B
SER
162
n
157
SER
162
B
SER
163
n
158
SER
163
B
MET
164
n
159
MET
164
B
THR
165
n
160
THR
165
B
LYS
166
n
161
LYS
166
B
ILE
167
n
162
ILE
167
B
LEU
168
n
163
LEU
168
B
GLU
169
n
164
GLU
169
B
PRO
170
n
165
PRO
170
B
PHE
171
n
166
PHE
171
B
LYS
172
n
167
LYS
172
B
LYS
173
n
168
LYS
173
B
GLN
174
n
169
GLN
174
B
ASN
175
n
170
ASN
175
B
PRO
176
n
171
PRO
176
B
ASP
177
n
172
ASP
177
B
ILE
178
n
173
ILE
178
B
VAL
179
n
174
VAL
179
B
ILE
180
n
175
ILE
180
B
TYR
181
n
176
TYR
181
B
GLN
182
n
177
GLN
182
B
TYR
183
n
178
TYR
183
B
MET
184
n
179
MET
184
B
ASP
185
n
180
ASP
185
B
ASP
186
n
181
ASP
186
B
LEU
187
n
182
LEU
187
B
TYR
188
n
183
TYR
188
B
VAL
189
n
184
VAL
189
B
GLY
190
n
185
GLY
190
B
SER
191
n
186
SER
191
B
ASP
192
n
187
ASP
192
B
LEU
193
n
188
LEU
193
B
GLU
194
n
189
GLU
194
B
ILE
195
n
190
ILE
195
B
GLY
196
n
191
GLY
196
B
GLN
197
n
192
GLN
197
B
HIS
198
n
193
HIS
198
B
ARG
199
n
194
ARG
199
B
THR
200
n
195
THR
200
B
LYS
201
n
196
LYS
201
B
ILE
202
n
197
ILE
202
B
GLU
203
n
198
GLU
203
B
GLU
204
n
199
GLU
204
B
LEU
205
n
200
LEU
205
B
ARG
206
n
201
ARG
206
B
GLN
207
n
202
GLN
207
B
HIS
208
n
203
HIS
208
B
LEU
209
n
204
LEU
209
B
LEU
210
n
205
LEU
210
B
ARG
211
n
206
ARG
211
B
TRP
212
n
207
TRP
212
B
GLY
213
n
208
GLY
213
B
n
209
214
B
n
210
215
B
n
211
216
B
n
212
217
B
n
213
218
B
n
214
219
B
n
215
220
B
n
216
221
B
n
217
222
B
n
218
223
B
n
219
224
B
n
220
225
B
PRO
226
n
221
PRO
226
B
PHE
227
n
222
PHE
227
B
LEU
228
n
223
LEU
228
B
TRP
229
n
224
TRP
229
B
MET
230
n
225
MET
230
B
GLY
231
n
226
GLY
231
B
TYR
232
n
227
TYR
232
B
GLU
233
n
228
GLU
233
B
LEU
234
n
229
LEU
234
B
HIS
235
n
230
HIS
235
B
PRO
236
n
231
PRO
236
B
ASP
237
n
232
ASP
237
B
LYS
238
n
233
LYS
238
B
TRP
239
n
234
TRP
239
B
THR
240
n
235
THR
240
B
VAL
241
n
236
VAL
241
B
GLN
242
n
237
GLN
242
B
PRO
243
n
238
PRO
243
B
ILE
244
n
239
ILE
244
B
VAL
245
n
240
VAL
245
B
LEU
246
n
241
LEU
246
B
PRO
247
n
242
PRO
247
B
GLU
248
n
243
GLU
248
B
LYS
249
n
244
LYS
249
B
ASP
250
n
245
ASP
250
B
SER
251
n
246
SER
251
B
TRP
252
n
247
TRP
252
B
THR
253
n
248
THR
253
B
VAL
254
n
249
VAL
254
B
ASN
255
n
250
ASN
255
B
ASP
256
n
251
ASP
256
B
ILE
257
n
252
ILE
257
B
GLN
258
n
253
GLN
258
B
LYS
259
n
254
LYS
259
B
LEU
260
n
255
LEU
260
B
VAL
261
n
256
VAL
261
B
GLY
262
n
257
GLY
262
B
LYS
263
n
258
LYS
263
B
LEU
264
n
259
LEU
264
B
ASN
265
n
260
ASN
265
B
TRP
266
n
261
TRP
266
B
ALA
267
n
262
ALA
267
B
SER
268
n
263
SER
268
B
GLN
269
n
264
GLN
269
B
ILE
270
n
265
ILE
270
B
TYR
271
n
266
TYR
271
B
PRO
272
n
267
PRO
272
B
GLY
273
n
268
GLY
273
B
ILE
274
n
269
ILE
274
B
LYS
275
n
270
LYS
275
B
VAL
276
n
271
VAL
276
B
ARG
277
n
272
ARG
277
B
GLN
278
n
273
GLN
278
B
LEU
279
n
274
LEU
279
B
SER
280
n
275
SER
280
B
LYS
281
n
276
LYS
281
B
LEU
282
n
277
LEU
282
B
LEU
283
n
278
LEU
283
B
ARG
284
n
279
ARG
284
B
GLY
285
n
280
GLY
285
B
THR
286
n
281
THR
286
B
LYS
287
n
282
LYS
287
B
ALA
288
n
283
ALA
288
B
LEU
289
n
284
LEU
289
B
THR
290
n
285
THR
290
B
GLU
291
n
286
GLU
291
B
VAL
292
n
287
VAL
292
B
ILE
293
n
288
ILE
293
B
PRO
294
n
289
PRO
294
B
LEU
295
n
290
LEU
295
B
THR
296
n
291
THR
296
B
GLU
297
n
292
GLU
297
B
GLU
298
n
293
GLU
298
B
ALA
299
n
294
ALA
299
B
GLU
300
n
295
GLU
300
B
LEU
301
n
296
LEU
301
B
GLU
302
n
297
GLU
302
B
LEU
303
n
298
LEU
303
B
ALA
304
n
299
ALA
304
B
GLU
305
n
300
GLU
305
B
ASN
306
n
301
ASN
306
B
ARG
307
n
302
ARG
307
B
GLU
308
n
303
GLU
308
B
ILE
309
n
304
ILE
309
B
LEU
310
n
305
LEU
310
B
LYS
311
n
306
LYS
311
B
GLU
312
n
307
GLU
312
B
PRO
313
n
308
PRO
313
B
VAL
314
n
309
VAL
314
B
HIS
315
n
310
HIS
315
B
GLY
316
n
311
GLY
316
B
VAL
317
n
312
VAL
317
B
TYR
318
n
313
TYR
318
B
TYR
319
n
314
TYR
319
B
ASP
320
n
315
ASP
320
B
PRO
321
n
316
PRO
321
B
SER
322
n
317
SER
322
B
LYS
323
n
318
LYS
323
B
ASP
324
n
319
ASP
324
B
LEU
325
n
320
LEU
325
B
ILE
326
n
321
ILE
326
B
ALA
327
n
322
ALA
327
B
GLU
328
n
323
GLU
328
B
ILE
329
n
324
ILE
329
B
GLN
330
n
325
GLN
330
B
LYS
331
n
326
LYS
331
B
GLN
332
n
327
GLN
332
B
GLY
333
n
328
GLY
333
B
GLN
334
n
329
GLN
334
B
GLY
335
n
330
GLY
335
B
GLN
336
n
331
GLN
336
B
TRP
337
n
332
TRP
337
B
THR
338
n
333
THR
338
B
TYR
339
n
334
TYR
339
B
GLN
340
n
335
GLN
340
B
ILE
341
n
336
ILE
341
B
TYR
342
n
337
TYR
342
B
GLN
343
n
338
GLN
343
B
GLU
344
n
339
GLU
344
B
PRO
345
n
340
PRO
345
B
PHE
346
n
341
PHE
346
B
LYS
347
n
342
LYS
347
B
ASN
348
n
343
ASN
348
B
LEU
349
n
344
LEU
349
B
LYS
350
n
345
LYS
350
B
THR
351
n
346
THR
351
B
GLY
352
n
347
GLY
352
B
LYS
353
n
348
LYS
353
B
TYR
354
n
349
TYR
354
B
ALA
355
n
350
ALA
355
B
ARG
356
n
351
ARG
356
B
MET
357
n
352
MET
357
B
ARG
358
n
353
ARG
358
B
GLY
359
n
354
GLY
359
B
ALA
360
n
355
ALA
360
B
HIS
361
n
356
HIS
361
B
THR
362
n
357
THR
362
B
ASN
363
n
358
ASN
363
B
ASP
364
n
359
ASP
364
B
VAL
365
n
360
VAL
365
B
LYS
366
n
361
LYS
366
B
GLN
367
n
362
GLN
367
B
LEU
368
n
363
LEU
368
B
THR
369
n
364
THR
369
B
GLU
370
n
365
GLU
370
B
ALA
371
n
366
ALA
371
B
VAL
372
n
367
VAL
372
B
GLN
373
n
368
GLN
373
B
LYS
374
n
369
LYS
374
B
ILE
375
n
370
ILE
375
B
THR
376
n
371
THR
376
B
THR
377
n
372
THR
377
B
GLU
378
n
373
GLU
378
B
SER
379
n
374
SER
379
B
ILE
380
n
375
ILE
380
B
VAL
381
n
376
VAL
381
B
ILE
382
n
377
ILE
382
B
TRP
383
n
378
TRP
383
B
GLY
384
n
379
GLY
384
B
LYS
385
n
380
LYS
385
B
THR
386
n
381
THR
386
B
PRO
387
n
382
PRO
387
B
LYS
388
n
383
LYS
388
B
PHE
389
n
384
PHE
389
B
LYS
390
n
385
LYS
390
B
LEU
391
n
386
LEU
391
B
PRO
392
n
387
PRO
392
B
ILE
393
n
388
ILE
393
B
GLN
394
n
389
GLN
394
B
LYS
395
n
390
LYS
395
B
GLU
396
n
391
GLU
396
B
THR
397
n
392
THR
397
B
TRP
398
n
393
TRP
398
B
GLU
399
n
394
GLU
399
B
THR
400
n
395
THR
400
B
TRP
401
n
396
TRP
401
B
TRP
402
n
397
TRP
402
B
THR
403
n
398
THR
403
B
GLU
404
n
399
GLU
404
B
TYR
405
n
400
TYR
405
B
TRP
406
n
401
TRP
406
B
GLN
407
n
402
GLN
407
B
ALA
408
n
403
ALA
408
B
THR
409
n
404
THR
409
B
TRP
410
n
405
TRP
410
B
ILE
411
n
406
ILE
411
B
PRO
412
n
407
PRO
412
B
GLU
413
n
408
GLU
413
B
TRP
414
n
409
TRP
414
B
GLU
415
n
410
GLU
415
B
PHE
416
n
411
PHE
416
B
VAL
417
n
412
VAL
417
B
ASN
418
n
413
ASN
418
B
THR
419
n
414
THR
419
B
PRO
420
n
415
PRO
420
B
PRO
421
n
416
PRO
421
B
LEU
422
n
417
LEU
422
B
VAL
423
n
418
VAL
423
B
LYS
424
n
419
LYS
424
B
LEU
425
n
420
LEU
425
B
TRP
426
n
421
TRP
426
B
TYR
427
n
422
TYR
427
B
GLN
428
n
423
GLN
428
B
author_and_software_defined_assembly
PISA
2
dimeric
5490
-40
46720
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
48
A
N
SER
49
A
O
GLN
145
A
O
GLN
146
A
O
ILE
142
A
O
ILE
143
A
N
ILE
132
A
N
ILE
133
A
N
PHE
61
A
N
PHE
62
A
O
LEU
74
A
O
LEU
75
A
N
LEU
109
A
N
LEU
110
A
O
LEU
187
A
O
LEU
188
A
O
GLY
190
A
O
GLY
191
A
N
VAL
179
A
N
VAL
180
A
N
TRP
229
A
N
TRP
230
A
O
TYR
232
A
O
TYR
233
A
N
GLU
233
A
N
GLU
234
A
O
THR
240
A
O
THR
241
A
N
TRP
239
A
N
TRP
240
A
O
GLY
316
A
O
GLY
317
A
O
LYS
350
A
O
LYS
351
A
N
ILE
341
A
N
ILE
342
A
O
THR
338
A
O
THR
339
A
N
GLN
330
A
N
GLN
331
A
N
ALA
327
A
N
ALA
328
A
O
LYS
388
A
O
LYS
389
A
N
PHE
389
A
N
PHE
390
A
O
GLU
415
A
O
GLU
416
A
N
THR
362
A
N
THR
363
A
O
LYS
512
A
O
LYS
513
A
O
LEU
469
A
O
LEU
470
A
N
GLY
453
A
N
GLY
454
A
O
VAL
458
A
O
VAL
459
A
N
TYR
441
A
N
TYR
442
A
N
PHE
440
A
N
PHE
441
A
O
ASN
494
A
O
ASN
495
A
N
ILE
495
A
N
ILE
496
A
O
ALA
534
A
O
ALA
535
B
N
SER
48
B
N
SER
43
B
O
GLN
145
B
O
GLN
140
B
O
TYR
144
B
O
TYR
139
B
N
PHE
130
B
N
PHE
125
B
N
ILE
63
B
N
ILE
58
B
O
ARG
72
B
O
ARG
67
B
N
TYR
181
B
N
TYR
176
B
O
TYR
188
B
O
TYR
183
B
O
VAL
189
B
O
VAL
184
B
N
THR
107
B
N
THR
102
B
N
VAL
106
B
N
VAL
101
B
O
LEU
234
B
O
LEU
229
B
N
TRP
252
B
N
TRP
247
B
O
ILE
293
B
O
ILE
288
B
O
TYR
354
B
O
TYR
349
B
N
TRP
337
B
N
TRP
332
B
O
TYR
342
B
O
TYR
337
B
N
ILE
326
B
N
ILE
321
B
N
ALA
327
B
N
ALA
322
B
O
LYS
390
B
O
LYS
385
B
N
LEU
391
B
N
LEU
386
B
O
GLU
415
B
O
GLU
410
1
A
MET
0
A
MET
1
1
Y
1
A
PRO
1
A
PRO
2
1
Y
1
A
ILE
2
A
ILE
3
1
Y
1
A
GLY
555
A
GLY
556
1
Y
1
B
VAL
90
B
VAL
85
1
Y
1
B
GLN
91
B
GLN
86
1
Y
1
B
LEU
214
B
LEU
209
1
Y
1
B
THR
215
B
THR
210
1
Y
1
B
THR
216
B
THR
211
1
Y
1
B
PRO
217
B
PRO
212
1
Y
1
B
ASP
218
B
ASP
213
1
Y
1
B
LYS
219
B
LYS
214
1
Y
1
B
LYS
220
B
LYS
215
1
Y
1
B
HIS
221
B
HIS
216
1
Y
1
B
GLN
222
B
GLN
217
1
Y
1
B
LYS
223
B
LYS
218
1
Y
1
B
GLU
224
B
GLU
219
1
Y
1
B
PRO
225
B
PRO
220
1
Y
1
A
LYS
20
-141.30
55.01
1
A
ASP
67
56.85
1.32
1
A
LYS
70
-179.58
149.29
1
A
GLN
91
-177.38
126.05
1
A
LEU
92
-154.67
-9.54
1
A
MET
184
56.65
-124.26
1
A
LYS
219
48.98
14.13
1
A
GLN
222
-28.92
-75.03
1
A
PRO
225
-37.47
140.82
1
A
MET
230
38.01
45.76
1
A
SER
280
-107.17
48.50
1
A
LEU
282
-112.72
-164.63
1
A
ARG
284
-122.16
-55.74
1
A
LYS
287
-168.73
90.92
1
A
LEU
289
93.53
-10.65
1
A
THR
290
-159.60
79.18
1
A
GLU
413
-36.85
122.04
1
A
SER
553
-91.53
-158.63
1
B
LYS
66
-28.77
-76.24
1
B
SER
68
-37.42
141.80
1
B
ASN
136
56.00
17.82
1
B
MET
184
58.76
-128.30
1
B
ILE
195
-39.53
-37.27
1
B
ASP
237
-47.08
-18.39
1
B
HIS
315
-58.17
107.14
1
B
ARG
356
-43.30
153.51
1
B
VAL
423
-59.30
4.34
1
B
TYR
427
-108.34
40.04
protein_rep.param
water.param
ion.param
edo.par
150.19
50.143
0.11
-2.823
0.000
-3.270
1.104
0.000
1.719
0.250
0.237
1.850
40.66
2991
99441
2.800
94.300
1.00
1.00
1
0.00
PDB entry 2zd1
57.805
1.850
40.66
187
8070
5
0
7878
0.008
1.658
1.85
40.66
3DLK
99442
1
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of an engineered form of the HIV-1 Reverse Transcriptase, RT69A
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
27
A
THR
28
HELX_P
A
GLU
44
A
GLU
45
1
1
18
A
PHE
77
A
PHE
78
HELX_P
A
THR
84
A
THR
85
1
2
8
A
HIS
96
A
HIS
97
HELX_P
A
LEU
100
A
LEU
101
5
3
5
A
GLY
112
A
GLY
113
HELX_P
A
VAL
118
A
VAL
119
5
4
7
A
ASP
121
A
ASP
122
HELX_P
A
ALA
129
A
ALA
130
5
5
9
A
SER
134
A
SER
135
HELX_P
A
GLU
138
A
GLU
139
5
6
5
A
GLY
155
A
GLY
156
HELX_P
A
ASN
175
A
ASN
176
1
7
21
A
GLU
194
A
GLU
195
HELX_P
A
ARG
211
A
ARG
212
1
8
18
A
THR
253
A
THR
254
HELX_P
A
GLN
269
A
GLN
270
1
9
17
A
GLN
278
A
GLN
279
HELX_P
A
LEU
282
A
LEU
283
5
10
5
A
THR
296
A
THR
297
HELX_P
A
LEU
310
A
LEU
311
1
11
15
A
ASN
363
A
ASN
364
HELX_P
A
GLY
384
A
GLY
385
1
12
22
A
GLN
394
A
GLN
395
HELX_P
A
TYR
405
A
TYR
406
1
13
12
A
THR
473
A
THR
474
HELX_P
A
SER
489
A
SER
490
1
14
17
A
SER
499
A
SER
500
HELX_P
A
GLN
507
A
GLN
508
1
15
9
A
SER
515
A
SER
516
HELX_P
A
LYS
528
A
LYS
529
1
16
14
A
GLY
544
A
GLY
545
HELX_P
A
VAL
552
A
VAL
553
1
17
9
B
THR
27
B
THR
22
HELX_P
B
GLU
44
B
GLU
39
1
18
18
B
PHE
77
B
PHE
72
HELX_P
B
THR
84
B
THR
79
1
19
8
B
GLY
112
B
GLY
107
HELX_P
B
VAL
118
B
VAL
113
5
20
7
B
PHE
124
B
PHE
119
HELX_P
B
ALA
129
B
ALA
124
5
21
6
B
SER
134
B
SER
129
HELX_P
B
GLU
138
B
GLU
133
5
22
5
B
LYS
154
B
LYS
149
HELX_P
B
ASN
175
B
ASN
170
1
23
22
B
GLU
194
B
GLU
189
HELX_P
B
TRP
212
B
TRP
207
1
24
19
B
HIS
235
B
HIS
230
HELX_P
B
TRP
239
B
TRP
234
5
25
5
B
VAL
254
B
VAL
249
HELX_P
B
SER
268
B
SER
263
1
26
15
B
VAL
276
B
VAL
271
HELX_P
B
LYS
281
B
LYS
276
1
27
6
B
LEU
282
B
LEU
277
HELX_P
B
ARG
284
B
ARG
279
5
28
3
B
THR
296
B
THR
291
HELX_P
B
GLU
312
B
GLU
307
1
29
17
B
ASN
363
B
ASN
358
HELX_P
B
GLY
384
B
GLY
379
1
30
22
B
GLN
394
B
GLN
389
HELX_P
B
TRP
406
B
TRP
401
1
31
13
B
PRO
421
B
PRO
416
HELX_P
B
GLN
428
B
GLN
423
5
32
8
TRANSFERASE
AIDS, HIV, REVERSE TRANSCRIPTASE, RT, crystal engineering, RNA-binding, RNA-directed DNA polymerase, Transferase, Viral nucleoprotein
A
PRO
225
A
PRO
226
1
A
PRO
226
A
PRO
227
-1.50
A
PRO
420
A
PRO
421
1
A
PRO
421
A
PRO
422
-3.32
POL_HV1B1
UNP
1
599
P03366
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQ
AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
POL_HV1B1
UNP
2
605
P03366
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
KILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV
LPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY
WQATWIPEWEFVNTPPLVKLWYQ
599
1153
3DLK
1
555
P03366
A
1
2
556
605
1027
3DLK
6
428
P03366
B
2
1
423
1
initiating methionine
MET
0
3DLK
A
P03366
UNP
1
1
PHE
engineered mutation
SER
160
3DLK
A
P03366
UNP
758
161
1
CYS
engineered mutation
SER
280
3DLK
A
P03366
UNP
878
281
2
CYS
engineered mutation
SER
280
3DLK
B
P03366
UNP
879
275
3
2
3
4
5
2
5
3
2
4
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
47
A
ILE
48
A
LYS
49
A
LYS
50
A
ILE
142
A
ILE
143
A
TYR
146
A
TYR
147
A
PHE
130
A
PHE
131
A
ILE
132
A
ILE
133
A
VAL
60
A
VAL
61
A
LYS
64
A
LYS
65
A
TRP
71
A
TRP
72
A
VAL
75
A
VAL
76
A
SER
105
A
SER
106
A
ASP
110
A
ASP
111
A
ASP
186
A
ASP
187
A
SER
191
A
SER
192
A
VAL
179
A
VAL
180
A
TYR
183
A
TYR
184
A
PHE
227
A
PHE
228
A
TRP
229
A
TRP
230
A
TYR
232
A
TYR
233
A
LEU
234
A
LEU
235
A
LYS
238
A
LYS
239
A
VAL
241
A
VAL
242
A
VAL
314
A
VAL
315
A
VAL
317
A
VAL
318
A
LYS
347
A
LYS
348
A
ALA
355
A
ALA
356
A
GLN
336
A
GLN
337
A
GLU
344
A
GLU
345
A
ILE
326
A
ILE
327
A
GLY
333
A
GLY
334
A
LYS
388
A
LYS
389
A
LEU
391
A
LEU
392
A
TRP
414
A
TRP
415
A
PHE
416
A
PHE
417
A
HIS
361
A
HIS
362
A
THR
362
A
THR
363
A
LYS
512
A
LYS
513
A
SER
513
A
SER
514
A
GLN
464
A
GLN
465
A
LEU
469
A
LEU
470
A
GLY
453
A
GLY
454
A
THR
459
A
THR
460
A
THR
439
A
THR
440
A
ALA
446
A
ALA
447
A
GLU
492
A
GLU
493
A
THR
497
A
THR
498
A
LYS
530
A
LYS
531
A
TRP
535
A
TRP
536
B
ILE
47
B
ILE
42
B
LYS
49
B
LYS
44
B
ILE
142
B
ILE
137
B
TYR
146
B
TYR
141
B
PHE
130
B
PHE
125
B
ILE
132
B
ILE
127
B
VAL
60
B
VAL
55
B
ILE
63
B
ILE
58
B
ARG
72
B
ARG
67
B
VAL
75
B
VAL
70
B
VAL
179
B
VAL
174
B
TYR
183
B
TYR
178
B
ASP
186
B
ASP
181
B
SER
191
B
SER
186
B
SER
105
B
SER
100
B
ASP
110
B
ASP
105
B
TYR
232
B
TYR
227
B
LEU
234
B
LEU
229
B
TRP
252
B
TRP
247
B
THR
253
B
THR
248
B
VAL
292
B
VAL
287
B
ILE
293
B
ILE
288
B
ASN
348
B
ASN
343
B
ALA
355
B
ALA
350
B
GLN
336
B
GLN
331
B
TYR
342
B
TYR
337
B
ILE
326
B
ILE
321
B
GLY
333
B
GLY
328
B
LYS
388
B
LYS
383
B
LEU
391
B
LEU
386
B
TRP
414
B
TRP
409
B
PHE
416
B
PHE
411
BINDING SITE FOR RESIDUE SO4 A 556
A
SO4
556
Software
4
A
LYS
331
A
LYS
332
4
1_555
A
GLY
333
A
GLY
334
4
1_555
A
GLN
334
A
GLN
335
4
1_555
A
LYS
512
A
LYS
513
4
1_555
5
C 1 2 1