1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Beasley, S.A.
Hristova, V.A.
Shaw, G.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
S
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
O
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
Y
225
N
doub
Y
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
doub
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
104
3095
3100
10.1073/pnas.0610548104
17360614
Structure of the Parkin in-between-ring domain provides insights for E3-ligase dysfunction in autosomal recessive Parkinson's disease.
2007
10.2210/pdb2jmo/pdb
pdb_00002jmo
1
SINGLE WAVELENGTH
M
1
1.0
8618.604
Parkin
6.3.2.-
IBR-type 1 domain, residues 308-384
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
Ubiquitin E3 ligase PRKN, Parkinson juvenile disease protein 2, Parkinson disease protein 2
no
no
GHMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEAS
GHMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEAS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PARK2, PRKN
9606
Homo sapiens
562
Escherichia coli
BL21(DE3) STAR
plasmid
the thrombin site of pET15b has been replaced with a TEV recognition site
p11 (modified pET15b)
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_database_status
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Other
1
0
2007-02-27
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-09
1
4
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_pdbx_database_status.deposit_site
SHEET
THE AUTHORS STATE THAT CD, NOE AND CHEMICAL SHIFT INDEX
DATA ARE NOT CONSISTENT WITH BETA SHEET CHARACTER IN THIS
PROTEIN.
RCSB
Y
RCSB
2006-11-24
REL
REL
ZN
ZINC ION
target function
200
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D HNCA
3D HNCACB
3D CBCA(CO)NH
3D H(CCO)NH
3D C(CO)NH
3D HCCH-TOCSY
3D HBCBCHCDHD
2D NOESY
3D 1H-15N NOESY
3D 1H-13C NOESY
0.2
mM
[U-100% 13C; U-100% 15N]
25
mM
100
mM
1
mM
0.033
mM
0.2
mM
[U-100% 13C; U-100% 15N]
25
mM
100
mM
1
mM
0.033
mM
100 mM NaCl, 25 mM Na2HPO4
6.95
ambient
298
K
The authors state that they used a CYANA residue library with a modified Cysteine - zinc ligand for use in the structure calculations. These were the angles and lengths listed.
simulated annealing, torsion angle dynamics
1
closest to the average
0.2 mM [U-100% 13C, U-100% 15N] IBR, 25 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.033 mM DSS, 100% D2O
100% D2O
0.2 mM [U-100% 13C, U-100% 15N] IBR, 25 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.033 mM DSS, 90% H2O, 10% D2O
90% H2O/10% D2O
Varian
structure solution
VNMR
6.1b
Johnson, One Moon Scientific
data analysis
NMRView
5.0.4.sol7
Johnson, One Moon Scientific
processing
NMRView
5.0.4.sol7
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
2.3
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
2.5.4
600
Varian
INOVA
Varian INOVA
ZN
201
2
ZN
ZN
201
A
ZN
401
2
ZN
ZN
401
A
GLY
1
n
1
GLY
1
A
HIS
2
n
2
HIS
2
A
MET
3
n
3
MET
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
GLU
6
n
6
GLU
6
A
GLN
7
n
7
GLN
7
A
TYR
8
n
8
TYR
8
A
ASN
9
n
9
ASN
9
A
ARG
10
n
10
ARG
10
A
TYR
11
n
11
TYR
11
A
GLN
12
n
12
GLN
12
A
GLN
13
n
13
GLN
13
A
TYR
14
n
14
TYR
14
A
GLY
15
n
15
GLY
15
A
ALA
16
n
16
ALA
16
A
GLU
17
n
17
GLU
17
A
GLU
18
n
18
GLU
18
A
CYS
19
n
19
CYS
19
A
VAL
20
n
20
VAL
20
A
LEU
21
n
21
LEU
21
A
GLN
22
n
22
GLN
22
A
MET
23
n
23
MET
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
VAL
26
n
26
VAL
26
A
LEU
27
n
27
LEU
27
A
CYS
28
n
28
CYS
28
A
PRO
29
n
29
PRO
29
A
ARG
30
n
30
ARG
30
A
PRO
31
n
31
PRO
31
A
GLY
32
n
32
GLY
32
A
CYS
33
n
33
CYS
33
A
GLY
34
n
34
GLY
34
A
ALA
35
n
35
ALA
35
A
GLY
36
n
36
GLY
36
A
LEU
37
n
37
LEU
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLU
40
n
40
GLU
40
A
PRO
41
n
41
PRO
41
A
ASP
42
n
42
ASP
42
A
GLN
43
n
43
GLN
43
A
ARG
44
n
44
ARG
44
A
LYS
45
n
45
LYS
45
A
VAL
46
n
46
VAL
46
A
THR
47
n
47
THR
47
A
CYS
48
n
48
CYS
48
A
GLU
49
n
49
GLU
49
A
GLY
50
n
50
GLY
50
A
GLY
51
n
51
GLY
51
A
ASN
52
n
52
ASN
52
A
GLY
53
n
53
GLY
53
A
LEU
54
n
54
LEU
54
A
GLY
55
n
55
GLY
55
A
CYS
56
n
56
CYS
56
A
GLY
57
n
57
GLY
57
A
PHE
58
n
58
PHE
58
A
ALA
59
n
59
ALA
59
A
PHE
60
n
60
PHE
60
A
CYS
61
n
61
CYS
61
A
ARG
62
n
62
ARG
62
A
GLU
63
n
63
GLU
63
A
CYS
64
n
64
CYS
64
A
LYS
65
n
65
LYS
65
A
GLU
66
n
66
GLU
66
A
ALA
67
n
67
ALA
67
A
TYR
68
n
68
TYR
68
A
HIS
69
n
69
HIS
69
A
GLU
70
n
70
GLU
70
A
GLY
71
n
71
GLY
71
A
GLU
72
n
72
GLU
72
A
CYS
73
n
73
CYS
73
A
SER
74
n
74
SER
74
A
ALA
75
n
75
ALA
75
A
VAL
76
n
76
VAL
76
A
PHE
77
n
77
PHE
77
A
GLU
78
n
78
GLU
78
A
ALA
79
n
79
ALA
79
A
SER
80
n
80
SER
80
A
author_defined_assembly
1
monomeric
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
33
A
SG
CYS
33
1_555
112.2
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
48
A
SG
CYS
48
1_555
104.7
A
CYS
33
A
SG
CYS
33
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
48
A
SG
CYS
48
1_555
112.2
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
56
A
SG
CYS
56
1_555
103.5
A
CYS
33
A
SG
CYS
33
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
56
A
SG
CYS
56
1_555
112.1
A
CYS
48
A
SG
CYS
48
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
56
A
SG
CYS
56
1_555
111.5
A
CYS
61
A
SG
CYS
61
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
64
A
SG
CYS
64
1_555
103.3
A
CYS
61
A
SG
CYS
61
1_555
A
ZN
401
C
ZN
ZN
1_555
A
HIS
69
A
NE2
HIS
69
1_555
118.3
A
CYS
64
A
SG
CYS
64
1_555
A
ZN
401
C
ZN
ZN
1_555
A
HIS
69
A
NE2
HIS
69
1_555
104.6
A
CYS
61
A
SG
CYS
61
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
73
A
SG
CYS
73
1_555
111.9
A
CYS
64
A
SG
CYS
64
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
73
A
SG
CYS
73
1_555
111.8
A
HIS
69
A
NE2
HIS
69
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
73
A
SG
CYS
73
1_555
106.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
TYR
8
-55.45
105.17
1
A
PRO
41
-69.73
8.00
2
A
GLN
22
-94.17
-61.56
2
A
PRO
31
-69.71
89.23
2
A
PRO
41
-69.72
3.07
2
A
GLU
72
176.95
148.18
3
A
CYS
33
-58.30
104.69
3
A
PRO
41
-69.82
5.14
3
A
VAL
76
-58.64
178.80
4
A
PRO
41
-69.70
5.46
4
A
LEU
54
-52.68
177.06
4
A
TYR
68
-52.06
104.04
5
A
VAL
20
36.98
31.92
5
A
PRO
41
-69.74
2.39
5
A
TYR
68
-53.50
103.95
5
A
GLU
72
179.35
154.68
6
A
PRO
41
-69.71
6.57
6
A
TYR
68
-52.15
103.06
7
A
PRO
31
-69.68
96.55
7
A
PRO
41
-69.79
10.85
8
A
PRO
39
-69.87
-174.69
8
A
PRO
41
-69.85
4.68
8
A
TYR
68
-51.87
108.64
9
A
GLN
22
-94.83
-68.10
9
A
PRO
29
-69.80
0.32
9
A
PRO
31
-69.74
12.25
9
A
PRO
41
-69.74
11.14
10
A
ALA
35
32.46
33.18
10
A
LEU
37
-52.05
172.61
10
A
PRO
41
-69.77
12.97
10
A
GLU
49
-58.55
177.16
10
A
LYS
65
39.43
32.01
10
A
GLU
72
177.93
140.54
11
A
PRO
29
-69.77
3.28
11
A
PRO
39
-69.82
-166.32
11
A
PRO
41
-69.82
11.29
12
A
VAL
20
33.93
32.03
12
A
PRO
41
-69.66
12.39
12
A
TYR
68
-52.17
106.54
13
A
VAL
20
34.08
32.03
13
A
PRO
39
-69.82
-175.37
13
A
PRO
41
-69.80
6.50
13
A
TYR
68
-52.04
102.35
14
A
GLU
5
35.80
31.92
14
A
VAL
20
32.80
33.22
14
A
PRO
39
-69.72
-164.75
14
A
PRO
41
-69.77
15.45
14
A
TYR
68
-52.10
102.07
15
A
VAL
20
-44.23
-19.93
15
A
GLN
22
-39.95
-32.23
15
A
MET
23
-37.06
-31.01
15
A
PRO
41
-69.83
7.64
15
A
ARG
44
-35.96
-38.96
15
A
ASN
52
-95.14
-66.32
16
A
PRO
41
-69.75
9.15
16
A
GLU
72
158.25
106.94
17
A
VAL
20
34.98
32.00
17
A
PRO
31
-69.76
82.39
17
A
ALA
35
28.98
43.81
17
A
PRO
41
-69.87
0.80
17
A
TYR
68
-52.01
102.44
17
A
GLU
72
177.91
137.13
17
A
VAL
76
-56.85
178.90
18
A
CYS
33
-54.95
103.77
18
A
ALA
35
-54.64
178.74
18
A
PRO
41
-69.70
11.50
18
A
ALA
79
-56.72
102.50
19
A
GLN
13
-52.22
173.32
19
A
PRO
41
-69.71
3.65
19
A
LEU
54
-52.44
177.49
19
A
TYR
68
-52.09
107.80
20
A
ASN
9
-54.25
177.11
20
A
PRO
39
-69.78
-171.53
20
A
PRO
41
-69.76
5.34
20
A
ARG
44
-32.19
-39.49
20
A
TYR
68
-51.95
104.62
IBR domain of Human Parkin
1
N
N
2
N
N
2
N
N
metalc
2.303
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.286
A
CYS
33
A
SG
CYS
33
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.308
A
CYS
48
A
SG
CYS
48
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.297
A
CYS
56
A
SG
CYS
56
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.304
A
CYS
61
A
SG
CYS
61
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.300
A
CYS
64
A
SG
CYS
64
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.128
A
HIS
69
A
NE2
HIS
69
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.292
A
CYS
73
A
SG
CYS
73
1_555
A
ZN
401
C
ZN
ZN
1_555
LIGASE
Parkin, IBR, E3 ligase, zinc binding domain, RBR, LIGASE
PRKN2_HUMAN
UNP
1
308
O60260
GEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEAS
308
384
2JMO
4
80
O60260
A
1
4
80
1
cloning artifact
GLY
1
2JMO
A
O60260
UNP
1
1
cloning artifact
HIS
2
2JMO
A
O60260
UNP
2
1
cloning artifact
MET
3
2JMO
A
O60260
UNP
3
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
5
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
A
CYS
28
A
CYS
28
5
1_555
A
CYS
33
A
CYS
33
5
1_555
A
CYS
48
A
CYS
48
5
1_555
A
LEU
54
A
LEU
54
5
1_555
A
CYS
56
A
CYS
56
5
1_555
A
CYS
61
A
CYS
61
4
1_555
A
CYS
64
A
CYS
64
4
1_555
A
HIS
69
A
HIS
69
4
1_555
A
CYS
73
A
CYS
73
4
1_555
1
P 1