0.018289
0.000000
0.000000
0.000000
0.008721
0.000000
0.000000
0.000000
0.008498
0.00000
0.00000
0.00000
Tan, K.
Li, H.
Abdullah, J.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
54.678
114.665
117.677
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-fructofuranose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2006-03-06
ADSC QUANTUM 315
Si 111 CHANNEL
SAD
M
x-ray
1
0.97929
1.0
19-ID
APS
0.97929
SYNCHROTRON
APS BEAMLINE 19-ID
31998.877
ROK family protein
1
man
polymer
342.297
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
3
man
branched
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
84
nat
water
sucrose
no
yes
SNA(MSE)TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIA(MSE)SVPGAVNQETGV
IDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGA(MSE)IINGRLHRGRHGLG
GEFGY(MSE)TTLAPAEKLNNWSQLASTGN(MSE)VRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIER(MSE)NRNLA
QGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
SNAMTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVP
YIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPA
EKLNNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQN
PDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
A
APC80695
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptococcus
Streptococcus pneumoniae
TIGR4
Escherichia
Escherichia coli
sample
170187
Streptococcus pneumoniae
511693
Escherichia coli BL21
BL21
PLASMID
PMCSG7
1
2.88
57.31
VAPOR DIFFUSION, HANGING DROP
8.5
20% (W/V) PEG-8000, 0.1M MgCl2, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Source and taxonomy
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
1
0
2006-05-30
1
1
2008-05-01
1
2
2011-07-13
2
0
2020-07-29
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.src_method
_entity.type
_struct_ref_seq_dif.details
L
SUC
11
n
B
GLC
1
L
SUC
11
n
B
FRU
2
L
SUC
21
n
C
GLC
1
L
SUC
21
n
C
FRU
2
L
SUC
31
n
D
GLC
1
L
SUC
31
n
D
FRU
2
DFrufb
b-D-fructofuranose
b-D-Fruf
Fru
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
Y
RCSB
Y
RCSB
2006-05-01
REL
REL
oligosaccharide
DFrufb2-1DGlcpa
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}
2
PDB-CARE
LINUCS
C1
O2
GLC
FRU
1
2
2
O1
HO2
sing
n
n
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
Nutrient
oligosaccharide with reducing-end-to-reducing-end glycosidic bond
sucrose
Oligosaccharide
TRS
1
3
TRS
TRS
293
A
HOH
1
4
HOH
HOH
294
A
HOH
2
4
HOH
HOH
295
A
HOH
3
4
HOH
HOH
296
A
HOH
4
4
HOH
HOH
297
A
HOH
5
4
HOH
HOH
298
A
HOH
6
4
HOH
HOH
299
A
HOH
7
4
HOH
HOH
300
A
HOH
8
4
HOH
HOH
301
A
HOH
9
4
HOH
HOH
302
A
HOH
10
4
HOH
HOH
303
A
HOH
11
4
HOH
HOH
304
A
HOH
12
4
HOH
HOH
305
A
HOH
13
4
HOH
HOH
306
A
HOH
14
4
HOH
HOH
307
A
HOH
15
4
HOH
HOH
308
A
HOH
16
4
HOH
HOH
309
A
HOH
17
4
HOH
HOH
310
A
HOH
18
4
HOH
HOH
311
A
HOH
19
4
HOH
HOH
312
A
HOH
20
4
HOH
HOH
313
A
HOH
21
4
HOH
HOH
314
A
HOH
22
4
HOH
HOH
315
A
HOH
24
4
HOH
HOH
316
A
HOH
25
4
HOH
HOH
317
A
HOH
26
4
HOH
HOH
318
A
HOH
27
4
HOH
HOH
319
A
HOH
28
4
HOH
HOH
320
A
HOH
29
4
HOH
HOH
321
A
HOH
30
4
HOH
HOH
322
A
HOH
31
4
HOH
HOH
323
A
HOH
32
4
HOH
HOH
324
A
HOH
33
4
HOH
HOH
325
A
HOH
34
4
HOH
HOH
326
A
HOH
35
4
HOH
HOH
327
A
HOH
36
4
HOH
HOH
328
A
HOH
37
4
HOH
HOH
329
A
HOH
38
4
HOH
HOH
330
A
HOH
39
4
HOH
HOH
331
A
HOH
40
4
HOH
HOH
332
A
HOH
41
4
HOH
HOH
333
A
HOH
42
4
HOH
HOH
334
A
HOH
43
4
HOH
HOH
335
A
HOH
44
4
HOH
HOH
336
A
HOH
45
4
HOH
HOH
337
A
HOH
46
4
HOH
HOH
338
A
HOH
47
4
HOH
HOH
339
A
HOH
48
4
HOH
HOH
340
A
HOH
49
4
HOH
HOH
341
A
HOH
50
4
HOH
HOH
342
A
HOH
51
4
HOH
HOH
343
A
HOH
52
4
HOH
HOH
344
A
HOH
53
4
HOH
HOH
345
A
HOH
54
4
HOH
HOH
346
A
HOH
55
4
HOH
HOH
347
A
HOH
56
4
HOH
HOH
348
A
HOH
57
4
HOH
HOH
349
A
HOH
58
4
HOH
HOH
350
A
HOH
59
4
HOH
HOH
351
A
HOH
60
4
HOH
HOH
352
A
HOH
61
4
HOH
HOH
353
A
HOH
62
4
HOH
HOH
354
A
HOH
63
4
HOH
HOH
355
A
HOH
64
4
HOH
HOH
356
A
HOH
65
4
HOH
HOH
357
A
HOH
66
4
HOH
HOH
358
A
HOH
67
4
HOH
HOH
359
A
HOH
68
4
HOH
HOH
360
A
HOH
69
4
HOH
HOH
361
A
HOH
70
4
HOH
HOH
362
A
HOH
71
4
HOH
HOH
363
A
HOH
72
4
HOH
HOH
364
A
HOH
73
4
HOH
HOH
365
A
HOH
74
4
HOH
HOH
366
A
HOH
75
4
HOH
HOH
367
A
HOH
76
4
HOH
HOH
368
A
HOH
77
4
HOH
HOH
369
A
HOH
78
4
HOH
HOH
370
A
HOH
79
4
HOH
HOH
371
A
HOH
80
4
HOH
HOH
372
A
HOH
81
4
HOH
HOH
373
A
HOH
82
4
HOH
HOH
374
A
HOH
83
4
HOH
HOH
375
A
HOH
84
4
HOH
HOH
376
A
HOH
85
4
HOH
HOH
377
A
n
1
-2
A
n
2
-1
A
n
3
0
A
MSE
1
n
4
MSE
1
A
THR
2
n
5
THR
2
A
ILE
3
n
6
ILE
3
A
ALA
4
n
7
ALA
4
A
THR
5
n
8
THR
5
A
ILE
6
n
9
ILE
6
A
ASP
7
n
10
ASP
7
A
ILE
8
n
11
ILE
8
A
GLY
9
n
12
GLY
9
A
GLY
10
n
13
GLY
10
A
THR
11
n
14
THR
11
A
GLY
12
n
15
GLY
12
A
ILE
13
n
16
ILE
13
A
LYS
14
n
17
LYS
14
A
PHE
15
n
18
PHE
15
A
ALA
16
n
19
ALA
16
A
SER
17
n
20
SER
17
A
LEU
18
n
21
LEU
18
A
THR
19
n
22
THR
19
A
PRO
20
n
23
PRO
20
A
ASP
21
n
24
ASP
21
A
GLY
22
n
25
GLY
22
A
LYS
23
n
26
LYS
23
A
ILE
24
n
27
ILE
24
A
LEU
25
n
28
LEU
25
A
ASP
26
n
29
ASP
26
A
LYS
27
n
30
LYS
27
A
THR
28
n
31
THR
28
A
SER
29
n
32
SER
29
A
ILE
30
n
33
ILE
30
A
SER
31
n
34
SER
31
A
THR
32
n
35
THR
32
A
PRO
33
n
36
PRO
33
A
GLU
34
n
37
GLU
34
A
ASN
35
n
38
ASN
35
A
LEU
36
n
39
LEU
36
A
GLU
37
n
40
GLU
37
A
ASP
38
n
41
ASP
38
A
LEU
39
n
42
LEU
39
A
LEU
40
n
43
LEU
40
A
ALA
41
n
44
ALA
41
A
TRP
42
n
45
TRP
42
A
LEU
43
n
46
LEU
43
A
ASP
44
n
47
ASP
44
A
GLN
45
n
48
GLN
45
A
ARG
46
n
49
ARG
46
A
LEU
47
n
50
LEU
47
A
SER
48
n
51
SER
48
A
GLU
49
n
52
GLU
49
A
GLN
50
n
53
GLN
50
A
ASP
51
n
54
ASP
51
A
TYR
52
n
55
TYR
52
A
SER
53
n
56
SER
53
A
GLY
54
n
57
GLY
54
A
ILE
55
n
58
ILE
55
A
ALA
56
n
59
ALA
56
A
MSE
57
n
60
MSE
57
A
SER
58
n
61
SER
58
A
VAL
59
n
62
VAL
59
A
PRO
60
n
63
PRO
60
A
GLY
61
n
64
GLY
61
A
ALA
62
n
65
ALA
62
A
VAL
63
n
66
VAL
63
A
ASN
64
n
67
ASN
64
A
GLN
65
n
68
GLN
65
A
GLU
66
n
69
GLU
66
A
THR
67
n
70
THR
67
A
GLY
68
n
71
GLY
68
A
VAL
69
n
72
VAL
69
A
ILE
70
n
73
ILE
70
A
ASP
71
n
74
ASP
71
A
GLY
72
n
75
GLY
72
A
PHE
73
n
76
PHE
73
A
SER
74
n
77
SER
74
A
ALA
75
n
78
ALA
75
A
VAL
76
n
79
VAL
76
A
PRO
77
n
80
PRO
77
A
TYR
78
n
81
TYR
78
A
ILE
79
n
82
ILE
79
A
HIS
80
n
83
HIS
80
A
GLY
81
n
84
GLY
81
A
PHE
82
n
85
PHE
82
A
SER
83
n
86
SER
83
A
TRP
84
n
87
TRP
84
A
TYR
85
n
88
TYR
85
A
GLU
86
n
89
GLU
86
A
ALA
87
n
90
ALA
87
A
LEU
88
n
91
LEU
88
A
SER
89
n
92
SER
89
A
SER
90
n
93
SER
90
A
TYR
91
n
94
TYR
91
A
GLN
92
n
95
GLN
92
A
LEU
93
n
96
LEU
93
A
PRO
94
n
97
PRO
94
A
VAL
95
n
98
VAL
95
A
HIS
96
n
99
HIS
96
A
LEU
97
n
100
LEU
97
A
GLU
98
n
101
GLU
98
A
ASN
99
n
102
ASN
99
A
ASP
100
n
103
ASP
100
A
ALA
101
n
104
ALA
101
A
ASN
102
n
105
ASN
102
A
CYS
103
n
106
CYS
103
A
VAL
104
n
107
VAL
104
A
GLY
105
n
108
GLY
105
A
LEU
106
n
109
LEU
106
A
SER
107
n
110
SER
107
A
GLU
108
n
111
GLU
108
A
LEU
109
n
112
LEU
109
A
LEU
110
n
113
LEU
110
A
ALA
111
n
114
ALA
111
A
HIS
112
n
115
HIS
112
A
PRO
113
n
116
PRO
113
A
GLU
114
n
117
GLU
114
A
LEU
115
n
118
LEU
115
A
GLU
116
n
119
GLU
116
A
ASN
117
n
120
ASN
117
A
ALA
118
n
121
ALA
118
A
ALA
119
n
122
ALA
119
A
CYS
120
n
123
CYS
120
A
VAL
121
n
124
VAL
121
A
VAL
122
n
125
VAL
122
A
ILE
123
n
126
ILE
123
A
GLY
124
n
127
GLY
124
A
THR
125
n
128
THR
125
A
GLY
126
n
129
GLY
126
A
ILE
127
n
130
ILE
127
A
GLY
128
n
131
GLY
128
A
GLY
129
n
132
GLY
129
A
ALA
130
n
133
ALA
130
A
MSE
131
n
134
MSE
131
A
ILE
132
n
135
ILE
132
A
ILE
133
n
136
ILE
133
A
ASN
134
n
137
ASN
134
A
GLY
135
n
138
GLY
135
A
ARG
136
n
139
ARG
136
A
LEU
137
n
140
LEU
137
A
HIS
138
n
141
HIS
138
A
ARG
139
n
142
ARG
139
A
GLY
140
n
143
GLY
140
A
ARG
141
n
144
ARG
141
A
HIS
142
n
145
HIS
142
A
GLY
143
n
146
GLY
143
A
LEU
144
n
147
LEU
144
A
GLY
145
n
148
GLY
145
A
GLY
146
n
149
GLY
146
A
GLU
147
n
150
GLU
147
A
PHE
148
n
151
PHE
148
A
GLY
149
n
152
GLY
149
A
TYR
150
n
153
TYR
150
A
MSE
151
n
154
MSE
151
A
THR
152
n
155
THR
152
A
THR
153
n
156
THR
153
A
LEU
154
n
157
LEU
154
A
ALA
155
n
158
ALA
155
A
PRO
156
n
159
PRO
156
A
ALA
157
n
160
ALA
157
A
GLU
158
n
161
GLU
158
A
LYS
159
n
162
LYS
159
A
LEU
160
n
163
LEU
160
A
ASN
161
n
164
ASN
161
A
ASN
162
n
165
ASN
162
A
TRP
163
n
166
TRP
163
A
SER
164
n
167
SER
164
A
GLN
165
n
168
GLN
165
A
LEU
166
n
169
LEU
166
A
ALA
167
n
170
ALA
167
A
SER
168
n
171
SER
168
A
THR
169
n
172
THR
169
A
GLY
170
n
173
GLY
170
A
ASN
171
n
174
ASN
171
A
MSE
172
n
175
MSE
172
A
VAL
173
n
176
VAL
173
A
ARG
174
n
177
ARG
174
A
TYR
175
n
178
TYR
175
A
VAL
176
n
179
VAL
176
A
ILE
177
n
180
ILE
177
A
GLU
178
n
181
GLU
178
A
LYS
179
n
182
LYS
179
A
SER
180
n
183
SER
180
A
GLY
181
n
184
GLY
181
A
HIS
182
n
185
HIS
182
A
THR
183
n
186
THR
183
A
ASP
184
n
187
ASP
184
A
TRP
185
n
188
TRP
185
A
ASP
186
n
189
ASP
186
A
GLY
187
n
190
GLY
187
A
ARG
188
n
191
ARG
188
A
LYS
189
n
192
LYS
189
A
ILE
190
n
193
ILE
190
A
TYR
191
n
194
TYR
191
A
GLN
192
n
195
GLN
192
A
GLU
193
n
196
GLU
193
A
ALA
194
n
197
ALA
194
A
ALA
195
n
198
ALA
195
A
ALA
196
n
199
ALA
196
A
GLY
197
n
200
GLY
197
A
ASN
198
n
201
ASN
198
A
ILE
199
n
202
ILE
199
A
LEU
200
n
203
LEU
200
A
CYS
201
n
204
CYS
201
A
GLN
202
n
205
GLN
202
A
GLU
203
n
206
GLU
203
A
ALA
204
n
207
ALA
204
A
ILE
205
n
208
ILE
205
A
GLU
206
n
209
GLU
206
A
ARG
207
n
210
ARG
207
A
MSE
208
n
211
MSE
208
A
ASN
209
n
212
ASN
209
A
ARG
210
n
213
ARG
210
A
ASN
211
n
214
ASN
211
A
LEU
212
n
215
LEU
212
A
ALA
213
n
216
ALA
213
A
GLN
214
n
217
GLN
214
A
GLY
215
n
218
GLY
215
A
LEU
216
n
219
LEU
216
A
LEU
217
n
220
LEU
217
A
ASN
218
n
221
ASN
218
A
ILE
219
n
222
ILE
219
A
GLN
220
n
223
GLN
220
A
TYR
221
n
224
TYR
221
A
LEU
222
n
225
LEU
222
A
ILE
223
n
226
ILE
223
A
ASP
224
n
227
ASP
224
A
PRO
225
n
228
PRO
225
A
GLY
226
n
229
GLY
226
A
VAL
227
n
230
VAL
227
A
ILE
228
n
231
ILE
228
A
SER
229
n
232
SER
229
A
LEU
230
n
233
LEU
230
A
GLY
231
n
234
GLY
231
A
GLY
232
n
235
GLY
232
A
SER
233
n
236
SER
233
A
ILE
234
n
237
ILE
234
A
SER
235
n
238
SER
235
A
GLN
236
n
239
GLN
236
A
ASN
237
n
240
ASN
237
A
PRO
238
n
241
PRO
238
A
ASP
239
n
242
ASP
239
A
PHE
240
n
243
PHE
240
A
ILE
241
n
244
ILE
241
A
GLN
242
n
245
GLN
242
A
GLY
243
n
246
GLY
243
A
VAL
244
n
247
VAL
244
A
LYS
245
n
248
LYS
245
A
LYS
246
n
249
LYS
246
A
ALA
247
n
250
ALA
247
A
VAL
248
n
251
VAL
248
A
GLU
249
n
252
GLU
249
A
ASP
250
n
253
ASP
250
A
PHE
251
n
254
PHE
251
A
VAL
252
n
255
VAL
252
A
ASP
253
n
256
ASP
253
A
ALA
254
n
257
ALA
254
A
TYR
255
n
258
TYR
255
A
GLU
256
n
259
GLU
256
A
GLU
257
n
260
GLU
257
A
TYR
258
n
261
TYR
258
A
THR
259
n
262
THR
259
A
VAL
260
n
263
VAL
260
A
ALA
261
n
264
ALA
261
A
PRO
262
n
265
PRO
262
A
VAL
263
n
266
VAL
263
A
ILE
264
n
267
ILE
264
A
GLN
265
n
268
GLN
265
A
ALA
266
n
269
ALA
266
A
CYS
267
n
270
CYS
267
A
THR
268
n
271
THR
268
A
TYR
269
n
272
TYR
269
A
HIS
270
n
273
HIS
270
A
ALA
271
n
274
ALA
271
A
ASP
272
n
275
ASP
272
A
ALA
273
n
276
ALA
273
A
ASN
274
n
277
ASN
274
A
LEU
275
n
278
LEU
275
A
TYR
276
n
279
TYR
276
A
GLY
277
n
280
GLY
277
A
ALA
278
n
281
ALA
278
A
LEU
279
n
282
LEU
279
A
VAL
280
n
283
VAL
280
A
ASN
281
n
284
ASN
281
A
TRP
282
n
285
TRP
282
A
LEU
283
n
286
LEU
283
A
GLN
284
n
287
GLN
284
A
GLU
285
n
288
GLU
285
A
GLU
286
n
289
GLU
286
A
LYS
287
n
290
LYS
287
A
GLN
288
n
291
GLN
288
A
TRP
289
n
292
TRP
289
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
6310
-21
24370
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
57
SELENOMETHIONINE
A
MSE
60
MET
A
MSE
131
SELENOMETHIONINE
A
MSE
134
MET
A
MSE
151
SELENOMETHIONINE
A
MSE
154
MET
A
MSE
172
SELENOMETHIONINE
A
MSE
175
MET
A
MSE
208
SELENOMETHIONINE
A
MSE
211
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
58.8385000000
A
O
LEU
25
A
O
LEU
28
A
N
SER
17
A
N
SER
20
A
O
ALA
16
A
O
ALA
19
A
N
THR
5
A
N
THR
8
A
N
ILE
6
A
N
ILE
9
A
O
SER
58
A
O
SER
61
A
N
VAL
59
A
N
VAL
62
A
O
GLU
98
A
O
GLU
101
A
N
ALA
62
A
N
ALA
65
A
O
ASP
71
A
O
ASP
74
A
O
ARG
136
A
O
ARG
139
A
N
ILE
133
A
N
ILE
136
A
O
GLY
128
A
O
GLY
131
A
N
VAL
122
A
N
VAL
125
A
N
VAL
121
A
N
VAL
124
A
O
GLY
231
A
O
GLY
234
A
N
LEU
230
A
N
LEU
233
A
O
GLN
265
A
O
GLN
268
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
-10.50
1.70
111.00
100.50
A
A
A
CB
CG
CD1
LEU
LEU
LEU
97
97
97
N
1
-12.75
1.70
111.00
98.25
A
A
A
CB
CG
CD2
LEU
LEU
LEU
97
97
97
N
1
-13.92
1.70
111.00
97.08
A
A
A
CB
CG
CD2
LEU
LEU
LEU
110
110
110
N
1
-12.12
1.70
111.00
98.88
A
A
A
CB
CG
CD2
LEU
LEU
LEU
137
137
137
N
1
5.66
0.90
118.30
123.96
A
A
A
CB
CG
OD1
ASP
ASP
ASP
253
253
253
N
1
A
A
CB
CG
LYS
LYS
14
14
0.164
0.027
1.521
1.685
N
1
A
A
CB
CG1
VAL
VAL
69
69
0.141
0.021
1.524
1.665
N
1
A
A
CB
CG
TRP
TRP
84
84
0.112
0.018
1.498
1.610
N
1
A
A
CB
CG1
VAL
VAL
122
122
0.136
0.021
1.524
1.660
N
1
A
A
CG
CD
GLU
GLU
178
178
0.093
0.015
1.515
1.608
N
1
A
A
CD1
CE1
TYR
TYR
269
269
0.135
0.015
1.389
1.524
N
1
A
A
CD1
CE1
TYR
TYR
276
276
0.093
0.015
1.389
1.482
N
1
A
VAL
76
-119.21
77.97
1
A
GLU
116
-106.86
-63.52
1
A
ASN
134
32.75
57.26
1
A
ALA
157
-146.46
-124.68
1
A
ASN
198
-57.71
107.87
1
A
THR
259
-111.52
-73.70
1
A
HIS
270
-146.25
-64.51
41.353
0.02
0.00
0.00
-0.01
0.00
-0.01
0.963
0.948
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22823
0.18464
0.18689
0.18689
2.01
19.51
1178
21779
21779
5.1
91.76
4.143
0.114
RANDOM
1
THROUGHOUT
0
SAD
0.171
0.159
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.01
19.51
84
2372
77
0
2211
0.030
0.022
2336
2.288
1.986
3187
6.924
5.000
288
38.377
25.481
104
16.694
15.000
362
27.737
15.000
8
0.158
0.200
365
0.011
0.020
1732
0.223
0.200
974
0.321
0.200
1603
0.187
0.200
115
0.170
0.200
48
0.162
0.200
10
1.713
1.500
1477
2.528
2.000
2282
4.198
3.000
1009
5.828
4.500
905
0.336
0.261
2.062
56
1134
1134
20
65.28
32.21
2.01
19.51
2GUP
23027
23027
0
0
0.1
1
27.14
6.5
92.0
0.511
2.01
2.07
2.05
1748
1
5.4
70.9
refinement
REFMAC
5.2.0019
data collection
SBC-Collect
data scaling
HKL-2000
phasing
HKL-3000
model building
SHELXE
phasing
SOLVE
phasing
RESOLVE
model building
ARP/wARP
ROK family protein
Structural Genomics, the crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
It is a dimer, which can be formed from the two monomers with the symmetry operations of (x,y,z) and (-x,y,1/2-z).
A
ASN
35
A
ASN
38
HELX_P
A
SER
48
A
SER
51
1
1
14
A
VAL
76
A
VAL
79
HELX_P
A
HIS
80
A
HIS
83
5
2
5
A
SER
83
A
SER
86
HELX_P
A
LEU
88
A
LEU
91
1
3
6
A
SER
89
A
SER
92
HELX_P
A
GLN
92
A
GLN
95
5
4
4
A
ASP
100
A
ASP
103
HELX_P
A
HIS
112
A
HIS
115
1
5
13
A
GLU
147
A
GLU
150
HELX_P
A
MSE
151
A
MSE
154
5
6
5
A
ASN
162
A
ASN
165
HELX_P
A
SER
168
A
SER
171
1
7
7
A
SER
168
A
SER
171
HELX_P
A
GLY
181
A
GLY
184
1
8
14
A
ASP
186
A
ASP
189
HELX_P
A
ALA
196
A
ALA
199
1
9
11
A
ASN
198
A
ASN
201
HELX_P
A
ASP
224
A
ASP
227
1
10
27
A
GLY
232
A
GLY
235
HELX_P
A
GLN
236
A
GLN
239
5
11
5
A
ASN
237
A
ASN
240
HELX_P
A
TYR
255
A
TYR
258
1
12
19
A
ASP
272
A
ASP
275
HELX_P
A
GLU
286
A
GLU
289
1
13
15
covale
1.326
both
A
MSE
1
A
C
MSE
4
1_555
A
THR
2
A
N
THR
5
1_555
covale
1.343
both
A
ALA
56
A
C
ALA
59
1_555
A
MSE
57
A
N
MSE
60
1_555
covale
1.313
both
A
MSE
57
A
C
MSE
60
1_555
A
SER
58
A
N
SER
61
1_555
covale
1.322
both
A
ALA
130
A
C
ALA
133
1_555
A
MSE
131
A
N
MSE
134
1_555
covale
1.335
both
A
MSE
131
A
C
MSE
134
1_555
A
ILE
132
A
N
ILE
135
1_555
covale
1.323
both
A
TYR
150
A
C
TYR
153
1_555
A
MSE
151
A
N
MSE
154
1_555
covale
1.310
both
A
MSE
151
A
C
MSE
154
1_555
A
THR
152
A
N
THR
155
1_555
covale
1.337
both
A
ASN
171
A
C
ASN
174
1_555
A
MSE
172
A
N
MSE
175
1_555
covale
1.337
both
A
MSE
172
A
C
MSE
175
1_555
A
VAL
173
A
N
VAL
176
1_555
covale
1.322
both
A
ARG
207
A
C
ARG
210
1_555
A
MSE
208
A
N
MSE
211
1_555
covale
1.326
both
A
MSE
208
A
C
MSE
211
1_555
A
ASN
209
A
N
ASN
212
1_555
covale
1.456
both
sing
B
GLC
1
B
C1
GLC
1_555
B
FRU
2
B
O2
FRU
1_555
covale
1.439
both
sing
C
GLC
1
C
C1
GLC
1_555
C
FRU
2
C
O2
FRU
1_555
covale
1.425
both
sing
D
GLC
1
D
C1
GLC
1_555
D
FRU
2
D
O2
FRU
1_555
TRANSFERASE
sugar kinase, ROK family, Streptococcus pneumoniae TIGR4, APC80695, sucrose, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE
AAK76199
GB
1
1
14973654
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH
GFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKL
NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDF
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
1
289
2GUP
1
289
14973654
A
1
4
292
1
cloning artifact
SER
-2
2GUP
A
14973654
GB
1
1
cloning artifact
ASN
-1
2GUP
A
14973654
GB
2
1
cloning artifact
ALA
0
2GUP
A
14973654
GB
3
1
MET
modified residue
MSE
1
2GUP
A
14973654
GB
1
4
1
MET
modified residue
MSE
57
2GUP
A
14973654
GB
57
60
1
MET
modified residue
MSE
131
2GUP
A
14973654
GB
131
134
1
MET
modified residue
MSE
151
2GUP
A
14973654
GB
151
154
1
MET
modified residue
MSE
172
2GUP
A
14973654
GB
172
175
1
MET
modified residue
MSE
208
2GUP
A
14973654
GB
208
211
5
2
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
24
A
ILE
27
A
ILE
30
A
ILE
33
A
GLY
12
A
GLY
15
A
LEU
18
A
LEU
21
A
ILE
3
A
ILE
6
A
GLY
9
A
GLY
12
A
GLY
54
A
GLY
57
A
VAL
59
A
VAL
62
A
VAL
95
A
VAL
98
A
ASN
99
A
ASN
102
A
ALA
62
A
ALA
65
A
VAL
63
A
VAL
66
A
ILE
70
A
ILE
73
A
ASP
71
A
ASP
74
A
ARG
136
A
ARG
139
A
HIS
138
A
HIS
141
A
ILE
127
A
ILE
130
A
ILE
133
A
ILE
136
A
ALA
118
A
ALA
121
A
ILE
123
A
ILE
126
A
VAL
227
A
VAL
230
A
GLY
231
A
GLY
234
A
ILE
264
A
ILE
267
A
ALA
266
A
ALA
269
20
C 2 2 21