0.008299
0.004792
0.000000
0.000000
0.009583
0.000000
0.000000
0.000000
0.019513
0.00000
0.00000
0.00000
Zeitler, C.E.
Estes, M.K.
Venkataram Prasad, B.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
120.490
120.490
51.249
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
MG
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
80
5050
5058
10.1128/JVI.80.10.5050-5058.2006
16641296
X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.
2006
10.2210/pdb2fyr/pdb
pdb_00002fyr
93.0
1
CCD
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9794
1.0
19-ID
APS
0.9794
0.9794
SYNCHROTRON
APS BEAMLINE 19-ID
20786.738
Chymotrypsin-like cysteine proteinase
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
103
nat
water
no
no
MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD
LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR
GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE
MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD
LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR
GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norovirus
Escherichia
Escherichia coli
sample
11983
Norwalk virus
469008
Escherichia coli BL21(DE3)
BL-21(DE3)
PLASMID
PET46 EK-LIC
1
2.80
56.07
5.50
0.2M magnesium chloride, 0.1M bis-tris, 30% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.50
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-07-25
1
1
2008-05-01
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-02-08
REL
REL
CL
CHLORIDE ION
MG
MAGNESIUM ION
HOH
water
CL
301
2
CL
CL
301
A
MG
302
3
MG
MG
302
A
HOH
2
4
HOH
HOH
303
A
HOH
3
4
HOH
HOH
304
A
HOH
4
4
HOH
HOH
305
A
HOH
5
4
HOH
HOH
306
A
HOH
6
4
HOH
HOH
307
A
HOH
7
4
HOH
HOH
308
A
HOH
8
4
HOH
HOH
309
A
HOH
9
4
HOH
HOH
310
A
HOH
10
4
HOH
HOH
311
A
HOH
11
4
HOH
HOH
312
A
HOH
12
4
HOH
HOH
313
A
HOH
13
4
HOH
HOH
314
A
HOH
14
4
HOH
HOH
315
A
HOH
16
4
HOH
HOH
316
A
HOH
17
4
HOH
HOH
317
A
HOH
18
4
HOH
HOH
318
A
HOH
19
4
HOH
HOH
319
A
HOH
20
4
HOH
HOH
320
A
HOH
21
4
HOH
HOH
321
A
HOH
24
4
HOH
HOH
322
A
HOH
26
4
HOH
HOH
323
A
HOH
27
4
HOH
HOH
324
A
HOH
28
4
HOH
HOH
325
A
HOH
29
4
HOH
HOH
326
A
HOH
30
4
HOH
HOH
327
A
HOH
31
4
HOH
HOH
328
A
HOH
32
4
HOH
HOH
329
A
HOH
33
4
HOH
HOH
330
A
HOH
34
4
HOH
HOH
331
A
HOH
35
4
HOH
HOH
332
A
HOH
36
4
HOH
HOH
333
A
HOH
37
4
HOH
HOH
334
A
HOH
39
4
HOH
HOH
335
A
HOH
40
4
HOH
HOH
336
A
HOH
41
4
HOH
HOH
337
A
HOH
42
4
HOH
HOH
338
A
HOH
43
4
HOH
HOH
339
A
HOH
44
4
HOH
HOH
340
A
HOH
45
4
HOH
HOH
341
A
HOH
48
4
HOH
HOH
342
A
HOH
49
4
HOH
HOH
343
A
HOH
50
4
HOH
HOH
344
A
HOH
51
4
HOH
HOH
345
A
HOH
54
4
HOH
HOH
346
A
HOH
56
4
HOH
HOH
347
A
HOH
57
4
HOH
HOH
348
A
HOH
60
4
HOH
HOH
349
A
HOH
61
4
HOH
HOH
350
A
HOH
63
4
HOH
HOH
351
A
HOH
65
4
HOH
HOH
352
A
HOH
66
4
HOH
HOH
353
A
HOH
70
4
HOH
HOH
354
A
HOH
77
4
HOH
HOH
355
A
HOH
78
4
HOH
HOH
356
A
HOH
79
4
HOH
HOH
357
A
HOH
80
4
HOH
HOH
358
A
HOH
86
4
HOH
HOH
359
A
HOH
87
4
HOH
HOH
360
A
HOH
93
4
HOH
HOH
361
A
HOH
107
4
HOH
HOH
362
A
HOH
135
4
HOH
HOH
363
A
HOH
145
4
HOH
HOH
364
A
HOH
148
4
HOH
HOH
365
A
HOH
153
4
HOH
HOH
366
A
HOH
155
4
HOH
HOH
367
A
HOH
156
4
HOH
HOH
368
A
HOH
157
4
HOH
HOH
369
A
HOH
161
4
HOH
HOH
370
A
HOH
162
4
HOH
HOH
371
A
HOH
164
4
HOH
HOH
372
A
HOH
166
4
HOH
HOH
373
A
HOH
167
4
HOH
HOH
374
A
HOH
168
4
HOH
HOH
375
A
HOH
169
4
HOH
HOH
376
A
HOH
170
4
HOH
HOH
377
A
HOH
171
4
HOH
HOH
378
A
HOH
172
4
HOH
HOH
379
A
HOH
177
4
HOH
HOH
380
A
HOH
178
4
HOH
HOH
381
A
HOH
179
4
HOH
HOH
382
A
HOH
185
4
HOH
HOH
383
A
HOH
189
4
HOH
HOH
384
A
HOH
190
4
HOH
HOH
385
A
HOH
196
4
HOH
HOH
386
A
HOH
198
4
HOH
HOH
387
A
HOH
199
4
HOH
HOH
388
A
HOH
201
4
HOH
HOH
389
A
HOH
203
4
HOH
HOH
390
A
HOH
204
4
HOH
HOH
391
A
HOH
210
4
HOH
HOH
392
A
HOH
213
4
HOH
HOH
393
A
HOH
218
4
HOH
HOH
394
A
HOH
219
4
HOH
HOH
395
A
HOH
220
4
HOH
HOH
396
A
HOH
221
4
HOH
HOH
397
A
HOH
222
4
HOH
HOH
398
A
HOH
223
4
HOH
HOH
399
A
HOH
225
4
HOH
HOH
400
A
HOH
227
4
HOH
HOH
401
A
HOH
228
4
HOH
HOH
402
A
HOH
229
4
HOH
HOH
403
A
HOH
230
4
HOH
HOH
404
A
HOH
231
4
HOH
HOH
405
A
2.500
2.500
39.440
39.440
n
1
-12
A
n
2
-11
A
n
3
-10
A
n
4
-9
A
n
5
-8
A
n
6
-7
A
n
7
-6
A
n
8
-5
A
n
9
-4
A
n
10
-3
A
n
11
-2
A
n
12
-1
A
n
13
0
A
ALA
1
n
14
ALA
1
A
PRO
2
n
15
PRO
2
A
PRO
3
n
16
PRO
3
A
THR
4
n
17
THR
4
A
LEU
5
n
18
LEU
5
A
TRP
6
n
19
TRP
6
A
SER
7
n
20
SER
7
A
ARG
8
n
21
ARG
8
A
VAL
9
n
22
VAL
9
A
THR
10
n
23
THR
10
A
LYS
11
n
24
LYS
11
A
PHE
12
n
25
PHE
12
A
GLY
13
n
26
GLY
13
A
SER
14
n
27
SER
14
A
GLY
15
n
28
GLY
15
A
TRP
16
n
29
TRP
16
A
GLY
17
n
30
GLY
17
A
PHE
18
n
31
PHE
18
A
TRP
19
n
32
TRP
19
A
VAL
20
n
33
VAL
20
A
SER
21
n
34
SER
21
A
PRO
22
n
35
PRO
22
A
THR
23
n
36
THR
23
A
VAL
24
n
37
VAL
24
A
PHE
25
n
38
PHE
25
A
ILE
26
n
39
ILE
26
A
THR
27
n
40
THR
27
A
THR
28
n
41
THR
28
A
THR
29
n
42
THR
29
A
HIS
30
n
43
HIS
30
A
VAL
31
n
44
VAL
31
A
VAL
32
n
45
VAL
32
A
PRO
33
n
46
PRO
33
A
THR
34
n
47
THR
34
A
GLY
35
n
48
GLY
35
A
VAL
36
n
49
VAL
36
A
LYS
37
n
50
LYS
37
A
GLU
38
n
51
GLU
38
A
PHE
39
n
52
PHE
39
A
PHE
40
n
53
PHE
40
A
GLY
41
n
54
GLY
41
A
GLU
42
n
55
GLU
42
A
PRO
43
n
56
PRO
43
A
LEU
44
n
57
LEU
44
A
SER
45
n
58
SER
45
A
SER
46
n
59
SER
46
A
ILE
47
n
60
ILE
47
A
ALA
48
n
61
ALA
48
A
ILE
49
n
62
ILE
49
A
HIS
50
n
63
HIS
50
A
GLN
51
n
64
GLN
51
A
ALA
52
n
65
ALA
52
A
GLY
53
n
66
GLY
53
A
GLU
54
n
67
GLU
54
A
PHE
55
n
68
PHE
55
A
THR
56
n
69
THR
56
A
GLN
57
n
70
GLN
57
A
PHE
58
n
71
PHE
58
A
ARG
59
n
72
ARG
59
A
PHE
60
n
73
PHE
60
A
SER
61
n
74
SER
61
A
LYS
62
n
75
LYS
62
A
LYS
63
n
76
LYS
63
A
MET
64
n
77
MET
64
A
ARG
65
n
78
ARG
65
A
PRO
66
n
79
PRO
66
A
ASP
67
n
80
ASP
67
A
LEU
68
n
81
LEU
68
A
THR
69
n
82
THR
69
A
GLY
70
n
83
GLY
70
A
MET
71
n
84
MET
71
A
VAL
72
n
85
VAL
72
A
LEU
73
n
86
LEU
73
A
GLU
74
n
87
GLU
74
A
GLU
75
n
88
GLU
75
A
GLY
76
n
89
GLY
76
A
CYS
77
n
90
CYS
77
A
PRO
78
n
91
PRO
78
A
GLU
79
n
92
GLU
79
A
GLY
80
n
93
GLY
80
A
THR
81
n
94
THR
81
A
VAL
82
n
95
VAL
82
A
CYS
83
n
96
CYS
83
A
SER
84
n
97
SER
84
A
VAL
85
n
98
VAL
85
A
LEU
86
n
99
LEU
86
A
ILE
87
n
100
ILE
87
A
LYS
88
n
101
LYS
88
A
ARG
89
n
102
ARG
89
A
ASP
90
n
103
ASP
90
A
SER
91
n
104
SER
91
A
GLY
92
n
105
GLY
92
A
GLU
93
n
106
GLU
93
A
LEU
94
n
107
LEU
94
A
LEU
95
n
108
LEU
95
A
PRO
96
n
109
PRO
96
A
LEU
97
n
110
LEU
97
A
ALA
98
n
111
ALA
98
A
VAL
99
n
112
VAL
99
A
ARG
100
n
113
ARG
100
A
MET
101
n
114
MET
101
A
GLY
102
n
115
GLY
102
A
ALA
103
n
116
ALA
103
A
ILE
104
n
117
ILE
104
A
ALA
105
n
118
ALA
105
A
SER
106
n
119
SER
106
A
MET
107
n
120
MET
107
A
ARG
108
n
121
ARG
108
A
ILE
109
n
122
ILE
109
A
GLN
110
n
123
GLN
110
A
GLY
111
n
124
GLY
111
A
ARG
112
n
125
ARG
112
A
LEU
113
n
126
LEU
113
A
VAL
114
n
127
VAL
114
A
HIS
115
n
128
HIS
115
A
GLY
116
n
129
GLY
116
A
GLN
117
n
130
GLN
117
A
SER
118
n
131
SER
118
A
GLY
119
n
132
GLY
119
A
MET
120
n
133
MET
120
A
LEU
121
n
134
LEU
121
A
LEU
122
n
135
LEU
122
A
n
136
123
A
n
137
124
A
n
138
125
A
n
139
126
A
n
140
127
A
n
141
128
A
n
142
129
A
n
143
130
A
n
144
131
A
n
145
132
A
GLY
133
n
146
GLY
133
A
THR
134
n
147
THR
134
A
ILE
135
n
148
ILE
135
A
PRO
136
n
149
PRO
136
A
GLY
137
n
150
GLY
137
A
ASP
138
n
151
ASP
138
A
CYS
139
n
152
CYS
139
A
GLY
140
n
153
GLY
140
A
ALA
141
n
154
ALA
141
A
PRO
142
n
155
PRO
142
A
TYR
143
n
156
TYR
143
A
VAL
144
n
157
VAL
144
A
HIS
145
n
158
HIS
145
A
LYS
146
n
159
LYS
146
A
ARG
147
n
160
ARG
147
A
GLY
148
n
161
GLY
148
A
ASN
149
n
162
ASN
149
A
ASP
150
n
163
ASP
150
A
TRP
151
n
164
TRP
151
A
VAL
152
n
165
VAL
152
A
VAL
153
n
166
VAL
153
A
CYS
154
n
167
CYS
154
A
GLY
155
n
168
GLY
155
A
VAL
156
n
169
VAL
156
A
HIS
157
n
170
HIS
157
A
ALA
158
n
171
ALA
158
A
ALA
159
n
172
ALA
159
A
ALA
160
n
173
ALA
160
A
THR
161
n
174
THR
161
A
LYS
162
n
175
LYS
162
A
SER
163
n
176
SER
163
A
GLY
164
n
177
GLY
164
A
ASN
165
n
178
ASN
165
A
THR
166
n
179
THR
166
A
VAL
167
n
180
VAL
167
A
VAL
168
n
181
VAL
168
A
CYS
169
n
182
CYS
169
A
ALA
170
n
183
ALA
170
A
VAL
171
n
184
VAL
171
A
GLN
172
n
185
GLN
172
A
ALA
173
n
186
ALA
173
A
GLY
174
n
187
GLY
174
A
GLU
175
n
188
GLU
175
A
GLY
176
n
189
GLY
176
A
GLU
177
n
190
GLU
177
A
THR
178
n
191
THR
178
A
ALA
179
n
192
ALA
179
A
LEU
180
n
193
LEU
180
A
GLU
181
n
194
GLU
181
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
2670
-44
14870
A
GLU
79
A
OE1
GLU
92
9_555
A
MG
302
C
MG
MG
1_555
A
HOH
402
D
O
HOH
1_555
96.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
9_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
17.0830000000
A
N
THR
10
A
N
THR
23
A
O
GLY
17
A
O
GLY
30
A
N
PHE
18
A
N
PHE
31
A
O
ILE
26
A
O
ILE
39
A
N
PHE
25
A
N
PHE
38
A
O
PHE
58
A
O
PHE
71
A
O
PHE
55
A
O
PHE
68
A
N
ALA
52
A
N
ALA
65
A
N
PHE
39
A
N
PHE
52
A
O
GLU
42
A
O
GLU
55
A
N
VAL
72
A
N
VAL
85
A
O
VAL
153
A
O
VAL
166
A
N
VAL
156
A
N
VAL
169
A
O
ALA
170
A
O
ALA
183
A
O
CYS
169
A
O
CYS
182
A
N
GLN
117
A
N
GLN
130
A
O
VAL
114
A
O
VAL
127
A
N
MET
107
A
N
MET
120
A
O
LEU
95
A
O
LEU
108
A
N
ILE
87
A
N
ILE
100
A
N
SER
84
A
N
SER
97
A
O
VAL
144
A
O
VAL
157
A
N
ARG
147
A
N
ARG
160
A
O
ASP
150
A
O
ASP
163
1
A
MET
-12
A
MET
1
1
Y
1
A
ALA
-11
A
ALA
2
1
Y
1
A
HIS
-10
A
HIS
3
1
Y
1
A
HIS
-9
A
HIS
4
1
Y
1
A
HIS
-8
A
HIS
5
1
Y
1
A
HIS
-7
A
HIS
6
1
Y
1
A
HIS
-6
A
HIS
7
1
Y
1
A
HIS
-5
A
HIS
8
1
Y
1
A
ASP
-4
A
ASP
9
1
Y
1
A
ASP
-3
A
ASP
10
1
Y
1
A
ASP
-2
A
ASP
11
1
Y
1
A
ASP
-1
A
ASP
12
1
Y
1
A
LYS
0
A
LYS
13
1
Y
1
A
THR
123
A
THR
136
1
Y
1
A
GLY
124
A
GLY
137
1
Y
1
A
ALA
125
A
ALA
138
1
Y
1
A
ASN
126
A
ASN
139
1
Y
1
A
ALA
127
A
ALA
140
1
Y
1
A
LYS
128
A
LYS
141
1
Y
1
A
GLY
129
A
GLY
142
1
Y
1
A
MET
130
A
MET
143
1
Y
1
A
ASP
131
A
ASP
144
1
Y
1
A
LEU
132
A
LEU
145
1
Y
1
A
A
O
O
HOH
HOH
374
374
1.61
1_555
12_564
1
A
A
OD2
OD2
ASP
ASP
150
150
1.68
1_555
9_554
1
A
ASN
165
-140.78
40.25
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
25.67
-0.79800
-1.44300
0.00000
-0.79800
0.00000
1.59600
0.246
0.211
0.211
2.20
40.00
1987
20876
18889
9.400
98.7
1
MOLECULAR REPLACEMENT
Engh & Huber
52.40
2.20
40.00
103
1381
2
0
1276
0.006
1.25
2.051
1.336
0.333
0.228
2.22
44
494
2.200
39.440
2FYR
11542
1
99.6
0.326
2.20
2.28
5.900
1
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Apr 24 2005
http://www.msc.com/protein/dtrek.html
d*TREK
package
9.4LDz
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
Nov. 1, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.701
Crystal Structure of Norwalk Virus Protease grown in the presence of AEBSF
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
2
A
PRO
15
HELX_P
A
SER
7
A
SER
20
1
1
6
A
HIS
30
A
HIS
43
HELX_P
A
VAL
32
A
VAL
45
5
2
3
A
ILE
135
A
ILE
148
HELX_P
A
CYS
139
A
CYS
152
5
3
5
metalc
2.876
A
GLU
79
A
OE1
GLU
92
9_555
A
MG
302
C
MG
MG
1_555
metalc
2.627
A
MG
302
C
MG
MG
1_555
A
HOH
402
D
O
HOH
1_555
VIRAL PROTEIN
protease, norovirus, Norwalk virus, Calicivirus, VIRAL PROTEIN
Q83883_9CALI
UNP
1
1101
Q83883
1101
1281
2FYR
1
181
Q83883
A
1
14
194
1
initiating methionine
MET
-12
2FYR
A
Q83883
UNP
1
1
cloning artifact
ALA
-11
2FYR
A
Q83883
UNP
2
1
expression tag
HIS
-10
2FYR
A
Q83883
UNP
3
1
expression tag
HIS
-9
2FYR
A
Q83883
UNP
4
1
expression tag
HIS
-8
2FYR
A
Q83883
UNP
5
1
expression tag
HIS
-7
2FYR
A
Q83883
UNP
6
1
expression tag
HIS
-6
2FYR
A
Q83883
UNP
7
1
expression tag
HIS
-5
2FYR
A
Q83883
UNP
8
1
cloning artifact
ASP
-4
2FYR
A
Q83883
UNP
9
1
cloning artifact
ASP
-3
2FYR
A
Q83883
UNP
10
1
cloning artifact
ASP
-2
2FYR
A
Q83883
UNP
11
1
cloning artifact
ASP
-1
2FYR
A
Q83883
UNP
12
1
cloning artifact
LYS
0
2FYR
A
Q83883
UNP
13
5
2
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
9
A
VAL
22
A
PHE
12
A
PHE
25
A
GLY
15
A
GLY
28
A
TRP
19
A
TRP
32
A
VAL
24
A
VAL
37
A
THR
28
A
THR
41
A
PHE
55
A
PHE
68
A
PHE
60
A
PHE
73
A
ILE
47
A
ILE
60
A
ALA
52
A
ALA
65
A
GLU
38
A
GLU
51
A
PHE
39
A
PHE
52
A
GLU
42
A
GLU
55
A
PRO
43
A
PRO
56
A
VAL
72
A
VAL
85
A
LEU
73
A
LEU
86
A
ASP
150
A
ASP
163
A
ALA
160
A
ALA
173
A
THR
166
A
THR
179
A
ALA
170
A
ALA
183
A
ARG
112
A
ARG
125
A
LEU
121
A
LEU
134
A
LEU
94
A
LEU
107
A
ILE
109
A
ILE
122
A
VAL
82
A
VAL
95
A
LYS
88
A
LYS
101
A
PRO
142
A
PRO
155
A
ARG
147
A
ARG
160
A
ASP
150
A
ASP
163
A
ALA
160
A
ALA
173
BINDING SITE FOR RESIDUE CL A 301
A
CL
301
Software
3
BINDING SITE FOR RESIDUE MG A 302
A
MG
302
Software
4
A
SER
7
A
SER
20
3
1_555
A
LYS
88
A
LYS
101
3
1_555
A
HOH
333
D
HOH
3
11_554
A
GLU
79
A
GLU
92
4
9_555
A
GLY
119
A
GLY
132
4
1_555
A
MET
120
A
MET
133
4
1_555
A
HOH
402
D
HOH
4
1_555
179
P 65 2 2