0.039694
0.022917
0.000000
0.000000
0.045834
0.000000
0.000000
0.000000
0.025675
0.00000
0.00000
0.00000
Parkinson, G.N.
Arvantis, G.M.
Lessinger, L.
Ginell, S.L.
Jones, R.
Gaffney, B.
Berman, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
25.193
25.193
38.948
C10 H15 N6 O6 P
346.236
n
2,6-DIAMINOPURINE NUCLEOTIDE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
H9 N3 Pt 2
246.170
PLATINUM TRIAMINE ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
Y
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
N
Y
8
N
N
Y
9
N
N
Y
10
N
N
N
11
N
N
N
12
N
P
N
13
N
O
N
14
N
O
N
15
N
O
N
16
N
C
N
17
R
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
S
C
N
22
N
O
N
23
N
O
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
O
N
40
N
P
N
41
N
O
N
42
N
O
N
43
N
O
N
44
N
C
N
45
R
C
N
46
N
O
N
47
S
C
N
48
N
O
N
49
N
C
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
N
C
N
84
R
C
Y
85
N
N
Y
86
N
C
Y
87
N
N
Y
88
N
C
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
PT
N
150
N
N
N
151
N
N
N
152
N
N
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
N
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
N
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
Y
1
N
sing
Y
2
N
doub
N
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
sing
Y
9
N
sing
N
10
N
sing
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
doub
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
sing
Y
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
sing
N
104
N
sing
Y
105
N
doub
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
15487
15495
10.1021/bi00047a014
7492550
Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative.
1995
10.2210/pdb211d/pdb
pdb_0000211d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.00
1
DIFFRACTOMETER
ENRAF-NONIUS CAD4
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ELLIOTT GX-21
1824.231
DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3')
1
syn
polymer
246.170
PLATINUM TRIAMINE ION
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
23
nat
water
no
yes
(DC)(DG)(DT)(1AP)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
1.89
1.4500
34.91
VAPOR DIFFUSION, SITTING DROP
VAPOR DIFFUSION, SITTING DROP
WATER
1
MPD
1
SPERMINE
1
MGCL2
1
NA CACODYLATE
1
WATER
2
MPD
2
-1.926
1
19
A
1
A
6
-2.357
A_DC1:DG6_A
1
-9.116
-0.524
0.062
-0.173
-6.410
1
19
A
2
A
5
-0.546
A_DG2:DC5_A
2
-2.353
0.271
0.037
-0.217
7.511
A
3
A
4
6.436
A_DT3:1AP4_A
3
-2.345
0.006
-0.090
-0.155
-7.511
A
4
A
3
6.436
A_1AP4:DT3_A
4
-2.345
-0.006
-0.090
-0.155
6.410
1
19
A
5
A
2
-0.546
A_DC5:DG2_A
5
-2.353
-0.271
0.037
-0.217
1.926
1
19
A
6
A
1
-2.357
A_DG6:DC1_A
6
-9.116
0.524
0.062
-0.173
5.971
-11.940
A
A
1
2
34.095
A
A
6
5
3.605
-6.682
0.026
5.348
AA_DC1DG2:DC5DG6_AA
1
0.540
2.755
-9.886
-11.653
1.262
2.829
-42.783
A
A
2
3
12.645
A
A
5
4
3.180
-9.157
0.193
-1.345
AA_DG2DT3:1AP4DC5_AA
2
1.593
2.200
-41.807
2.695
0.413
6.162
-9.873
A
A
3
4
37.463
A
A
4
3
3.728
-6.001
0.000
5.271
AA_DT31AP4:DT31AP4_AA
3
0.000
0.000
-7.844
-11.197
0.000
2.829
-42.783
A
A
4
5
12.645
A
A
3
2
3.180
-9.157
-0.193
-1.345
AA_1AP4DC5:DG2DT3_AA
4
-1.593
-2.200
-41.807
2.695
-0.413
5.971
-11.940
A
A
5
6
34.095
A
A
2
1
3.605
-6.682
-0.026
5.348
AA_DC5DG6:DC1DG2_AA
5
-0.540
-2.755
-9.886
-11.653
-1.262
diffrn_detector
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Database references
Derived calculations
1
0
1996-03-22
1
1
2008-05-22
1
2
2011-07-13
1
3
2018-04-18
1
4
2024-02-14
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1995-06-13
REL
REL
PTN
PLATINUM TRIAMINE ION
SPM
SPERMINE
HOH
water
G
6
2
PTN
PTN
7
A
SPM
7
3
SPM
SPM
8
A
HOH
8
4
HOH
HOH
9
A
HOH
9
4
HOH
HOH
10
A
HOH
10
4
HOH
HOH
11
A
HOH
11
4
HOH
HOH
12
A
HOH
12
4
HOH
HOH
13
A
HOH
13
4
HOH
HOH
14
A
HOH
14
4
HOH
HOH
15
A
HOH
15
4
HOH
HOH
16
A
HOH
16
4
HOH
HOH
17
A
HOH
17
4
HOH
HOH
18
A
HOH
18
4
HOH
HOH
19
A
HOH
19
4
HOH
HOH
20
A
HOH
20
4
HOH
HOH
21
A
HOH
21
4
HOH
HOH
22
A
HOH
22
4
HOH
HOH
23
A
HOH
23
4
HOH
HOH
24
A
HOH
24
4
HOH
HOH
25
A
HOH
25
4
HOH
HOH
26
A
HOH
26
4
HOH
HOH
27
A
HOH
27
4
HOH
HOH
28
A
HOH
28
4
HOH
HOH
29
A
HOH
29
4
HOH
HOH
30
A
HOH
30
4
HOH
HOH
31
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
+A
4
n
4
1AP
4
A
C
5
n
5
DC
5
A
+G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
DG
6
A
N7
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N1
PTN
1_555
87.6
A
DG
6
A
N7
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N2
PTN
1_555
91.6
A
PTN
7
B
N1
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N2
PTN
1_555
179.1
A
DG
6
A
N7
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N3
PTN
1_555
156.3
A
PTN
7
B
N1
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N3
PTN
1_555
89.7
A
PTN
7
B
N2
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
PTN
7
B
N3
PTN
1_555
91.1
A
DG
6
A
N7
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
A
DG
6
A
C8
DG
6
1_555
22.1
A
PTN
7
B
N1
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
DG
6
A
C8
DG
6
1_555
99.5
A
PTN
7
B
N2
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
DG
6
A
C8
DG
6
1_555
79.6
A
PTN
7
B
N3
PTN
1_555
A
PTN
7
B
PT
PTN
1_555
A
DG
6
A
C8
DG
6
1_555
169.6
A
1AP
4
2,6-DIAMINOPURINE NUCLEOTIDE
A
1AP
4
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
38.9480000000
1
14.08
1.20
119.70
133.78
A
A
A
C3'
O3'
P
1AP
1AP
DC
4
4
5
B
Y
1
7.36
1.10
110.50
117.86
A
A
A
O3'
P
OP2
1AP
DC
DC
4
5
5
A
A
Y
1
A
A
O3'
P
1AP
DC
4
5
0.081
0.012
1.607
1.688
A
Y
1
A
A
OP2
C3
DG
SPM
2
8
2.15
1_555
2_444
0.17
0.17
1.600
12.000
1583
70.400
1
4.000
1.600
12.000
23
165
19
123
0
0.009
1.66
1.600
211D
2129
1741
2.000
1
refinement
X-PLOR
THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.615
both
A
DT
3
A
O3'
DT
3
1_555
A
1AP
4
A
P
1AP
4
1_555
covale
1.688
one
A
A
1AP
4
A
O3'
1AP
4
1_555
A
DC
5
A
P
DC
5
1_555
covale
1.589
one
B
A
1AP
4
A
O3'
1AP
4
1_555
A
DC
5
A
P
DC
5
1_555
metalc
2.245
A
DG
6
A
N7
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
metalc
3.079
A
DG
6
A
C8
DG
6
1_555
A
PTN
7
B
PT
PTN
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
4_556
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
4_556
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
4_556
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
4_556
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
4_556
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
4_556
hydrog
DT-1AP MISPAIR
A
DT
3
A
O2
DT
3
1_555
A
1AP
4
A
N2
1AP
4
4_556
hydrog
1AP-DT MISPAIR
A
1AP
4
A
N2
1AP
4
1_555
A
DT
3
A
O2
DT
3
4_556
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
4_556
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
4_556
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
4_556
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
4_556
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
4_556
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
4_556
DNA
Z-DNA, DOUBLE HELIX, MODIFIED, DNA
211D
PDB
1
211D
1
6
211D
1
6
211D
A
1
1
6
BINDING SITE FOR RESIDUE PTN A 7
A
PTN
7
Software
5
BINDING SITE FOR RESIDUE SPM A 8
A
SPM
8
Software
10
A
DG
2
A
DG
2
5
5_446
A
DC
5
A
DC
5
5
1_555
A
DG
6
A
DG
6
5
6_346
A
DG
6
A
DG
6
5
1_555
A
SPM
8
C
SPM
5
1_555
A
DG
2
A
DG
2
10
3_545
A
DT
3
A
DT
3
10
3_545
A
1AP
4
A
1AP
4
10
3_545
A
DC
5
A
DC
5
10
1_555
A
DG
6
A
DG
6
10
5_546
A
PTN
7
B
PTN
10
1_555
A
HOH
9
D
HOH
10
3_545
A
HOH
12
D
HOH
10
3_545
A
HOH
24
D
HOH
10
3_545
A
HOH
31
D
HOH
10
3_545
154
P 32 2 1