1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhu, L.
Chou, S.-H.
Reid, B.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
12159
12164
10.1073/pnas.93.22.12159
8901550
A single G-to-C change causes human centromere TGGAA repeats to fold back into hairpins.
1996
10.2210/pdb1xue/pdb
pdb_00001xue
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5300.460
DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*CP*AP*AP*TP*GP*GP*AP*AP*C)-3')
1
syn
polymer
no
no
(DG)(DT)(DG)(DG)(DA)(DA)(DT)(DG)(DC)(DA)(DA)(DT)(DG)(DG)(DA)(DA)(DC)
GTGGAATGCAATGGAAC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-3.007
1
19
A
1
A
17
1.518
A_DG1:DC17_A
1
5.839
0.692
1.417
-0.541
6.240
1
20
A
2
A
16
1.329
A_DT2:DA16_A
2
6.039
0.554
0.739
-0.300
27.203
9
11
A
3
A
15
4.777
A_DG3:DA15_A
3
-14.789
6.454
0.963
-4.447
-32.398
9
11
A
5
A
13
7.456
A_DA5:DG13_A
4
-18.898
-6.369
1.131
-4.426
-11.659
1
20
A
6
A
12
-0.676
A_DA6:DT12_A
5
8.785
-0.421
0.370
-0.141
10.798
1
20
A
7
A
11
1.600
A_DT7:DA11_A
6
11.535
0.403
0.504
-0.154
28.243
9
11
A
8
A
10
9.812
A_DG8:DA10_A
7
-7.155
6.320
1.156
-4.408
3.133
33.971
A
A
1
2
-0.772
A
A
17
16
3.166
-0.448
0.095
-1.091
AA_DG1DT2:DA16DC17_AA
1
7.101
-12.239
33.239
-1.798
0.944
2.898
59.293
A
A
2
3
1.381
A
A
16
15
2.887
1.366
-0.105
1.052
AA_DT2DG3:DA15DA16_AA
2
3.578
-3.618
59.181
1.002
0.267
3.050
61.158
A
A
5
6
5.087
A
A
13
12
2.957
5.170
-0.319
1.199
AA_DA5DA6:DT12DG13_AA
3
-2.641
2.599
60.908
0.952
0.198
2.746
30.430
A
A
6
7
5.606
A
A
12
11
2.829
2.936
0.304
-0.517
AA_DA6DT7:DA11DT12_AA
4
-1.772
3.383
30.240
-1.488
-0.883
2.916
54.515
A
A
7
8
5.981
A
A
11
10
2.825
5.469
0.621
0.858
AA_DT7DG8:DA10DA11_AA
5
2.398
-2.623
54.212
0.645
-0.551
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-03-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
Y
BNL
1996-08-26
REL
10
BIOSYM
refinement
Discover
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
C
9
n
9
DC
9
A
A
10
n
10
DA
10
A
A
11
n
11
DA
11
A
T
12
n
12
DT
12
A
G
13
n
13
DG
13
A
G
14
n
14
DG
14
A
A
15
n
15
DA
15
A
A
16
n
16
DA
16
A
C
17
n
17
DC
17
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DT
2
0.062
SIDE CHAIN
1
A
DA
10
0.070
SIDE CHAIN
2
A
DA
10
0.070
SIDE CHAIN
3
A
DA
10
0.070
SIDE CHAIN
4
A
DA
10
0.070
SIDE CHAIN
5
A
DT
2
0.059
SIDE CHAIN
5
A
DA
10
0.070
SIDE CHAIN
6
A
DA
10
0.070
SIDE CHAIN
7
A
DA
10
0.070
SIDE CHAIN
8
A
DA
10
0.070
SIDE CHAIN
9
A
DT
2
0.062
SIDE CHAIN
9
A
DA
10
0.070
SIDE CHAIN
10
A
DA
10
0.070
SIDE CHAIN
1
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
-4.08
0.60
122.90
118.82
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
1
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
2
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
1.96
0.30
108.30
110.26
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
2
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
2
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
-4.06
0.60
122.90
118.84
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
2
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
2
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
2
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
2.82
0.30
108.30
111.12
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
2
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
3
3.02
0.30
108.30
111.32
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
3
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
3
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
-4.06
0.60
122.90
118.84
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
3
3.26
0.30
108.30
111.56
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
3
2.14
0.30
108.30
110.44
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
2.86
0.30
108.30
111.16
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
3
2.12
0.30
108.30
110.42
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
4
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
4
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
4
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
4
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
-4.00
0.60
122.90
118.90
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
4
3.36
0.30
108.30
111.66
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
4
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
4
2.22
0.30
108.30
110.52
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
4
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
4
2.17
0.30
108.30
110.47
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
5
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
5
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
5
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
-4.07
0.60
122.90
118.83
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
5
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
5
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
5
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
5
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
5
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
6
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
6
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
6
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
-4.00
0.60
122.90
118.90
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
6
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
6
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
6
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
6
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
7
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
7
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
7
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
-4.04
0.60
122.90
118.86
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
7
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
7
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
7
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
7
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
7
2.18
0.30
108.30
110.48
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
8
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
8
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
8
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
8
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
-4.01
0.60
122.90
118.89
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
8
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
8
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
8
2.26
0.30
108.30
110.56
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
8
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
8
2.17
0.30
108.30
110.47
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
9
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
9
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
9
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
-4.03
0.60
122.90
118.87
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
9
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
9
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
9
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
9
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
9
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
10
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
10
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
10
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
-4.02
0.60
122.90
118.88
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
10
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
10
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
10
2.27
0.30
108.30
110.57
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
10
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DA
DA
DA
15
15
15
N
10
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
10
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DC
DC
DC
17
17
17
N
refinement
AMBER
STRUCTURE OF GTGGAATGCAATGGAAC HAIRPIN, NMR, 10 STRUCTURES
1
N
N
hydrog
TYPE_8_PAIR
A
DG
1
A
N1
DG
1
1_555
A
DA
16
A
N1
DA
16
1_555
hydrog
TYPE_8_PAIR
A
DG
1
A
O6
DG
1
1_555
A
DA
16
A
N6
DA
16
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
17
A
N3
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
17
A
O2
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
17
A
N4
DC
17
1_555
hydrog
DT-DA PAIR
A
DT
2
A
O2
DT
2
1_555
A
DA
15
A
N6
DA
15
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
A
DA
16
A
N1
DA
16
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
A
DA
16
A
N6
DA
16
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DA
15
A
N7
DA
15
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N3
DG
3
1_555
A
DA
15
A
N6
DA
15
1_555
hydrog
TYPE_11_PAIR
A
DA
5
A
N6
DA
5
1_555
A
DG
13
A
N3
DG
13
1_555
hydrog
TYPE_11_PAIR
A
DA
5
A
N7
DA
5
1_555
A
DG
13
A
N2
DG
13
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
A
DT
12
A
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
A
DT
12
A
O4
DT
12
1_555
hydrog
DT-DA PAIR
A
DT
7
A
O2
DT
7
1_555
A
DA
10
A
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
A
DA
11
A
N1
DA
11
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
A
DA
11
A
N6
DA
11
1_555
hydrog
TYPE_11_PAIR
A
DG
8
A
N2
DG
8
1_555
A
DA
10
A
N7
DA
10
1_555
hydrog
TYPE_11_PAIR
A
DG
8
A
N3
DG
8
1_555
A
DA
10
A
N6
DA
10
1_555
DNA
DEOXYRIBONUCLEIC ACID, MUTATION, FOLDING, CENTROMERE, SATELLITE III, DNA
1XUE
PDB
1
1XUE
1
17
1XUE
1
17
1XUE
A
1
1
17
1
P 1