data_1UE4 # _entry.id 1UE4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UE4 pdb_00001ue4 10.2210/pdb1ue4/pdb NDB UD0034 ? ? RCSB RCSB005720 ? ? WWPDB D_1000005720 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1UE2 'The crystal structure of d(GI5CGAAAGCT)' unspecified PDB 1UE3 'The crystal structure of d(GCGAAAGC) containing hexaamminecobalt' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UE4 _pdbx_database_status.recvd_initial_deposition_date 2003-05-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sunami, T.' 1 'Kondo, J.' 2 'Hirao, I.' 3 'Watanabe, K.' 4 'Miura, K.' 5 'Takenaka, A.' 6 # _citation.id primary _citation.title ;Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 60 _citation.page_first 422 _citation.page_last 431 _citation.year 2004 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14993665 _citation.pdbx_database_id_DOI 10.1107/S0907444903028415 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sunami, T.' 1 ? primary 'Kondo, J.' 2 ? primary 'Hirao, I.' 3 ? primary 'Watanabe, K.' 4 ? primary 'Miura, K.' 5 ? primary 'Takenaka, A.' 6 ? # _cell.entry_id 1UE4 _cell.length_a 36.907 _cell.length_b 36.907 _cell.length_c 64.312 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UE4 _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3'" 2460.644 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 66 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DA)(DA)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGAAAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DG n 1 8 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1UE4 _struct_ref.pdbx_db_accession 1UE4 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1UE4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1UE4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 1UE4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.55 _exptl_crystal.density_percent_sol 19.80 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;sodium chloride, magnesium chloride, spermine 4HCl, 2-methyl-2,4-pentanediol, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium chloride' ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 'spermine 4HCl' ? ? ? 1 4 1 2-methyl-2,4-pentanediol ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 2 'sodium chloride' ? ? ? 1 7 2 'magnesium chloride' ? ? ? 1 8 2 'spermine 4HCl' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-18B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-18B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1UE4 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 26 _reflns.number_all 3177 _reflns.number_obs 3175 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1UE4 _refine.ls_d_res_high 1.65 _refine.ls_d_res_low 15 _refine.pdbx_ls_sigma_F 3 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 2898 _refine.ls_number_reflns_obs 2792 _refine.ls_number_reflns_R_free 272 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2089 _refine.ls_R_factor_R_free 0.2356 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1UE2' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'G. PARKINSON ET AL., (1996) ACTACRYST. D52, 57-64' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 186 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 253 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 0.9 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.71 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.1827 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2355 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1UE4 _struct.title 'Crystal structure of d(GCGAAAGC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UE4 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, sheared G:A pair, bulge-in duplex, G:AxA:G crossing' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 162 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 163 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 164 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 165 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 166 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 101 A HOH 167 1_555 ? ? ? ? ? ? ? 2.066 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 6 N7 ? ? A DG 3 A DA 6 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DG 3 A DA 6 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DG 3 N3 ? ? A DA 6 A DG 3 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DG 3 N2 ? ? A DA 6 A DG 3 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH C . ? HOH A 162 . ? 1_555 ? 2 AC1 6 HOH C . ? HOH A 163 . ? 1_555 ? 3 AC1 6 HOH C . ? HOH A 164 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 165 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 166 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 167 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UE4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UE4 _atom_sites.fract_transf_matrix[1][1] 0.027095 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027095 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015549 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 31.225 2.049 51.430 1.00 36.87 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 31.673 1.704 50.118 1.00 31.52 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 30.656 0.798 49.464 1.00 29.09 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 29.466 1.546 49.127 1.00 29.58 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 31.100 0.164 48.156 1.00 29.55 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 30.350 -1.043 47.997 1.00 33.48 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 30.681 1.201 47.128 1.00 28.76 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 29.386 1.748 47.721 1.00 27.01 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 29.153 3.171 47.498 1.00 24.13 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 30.084 4.182 47.549 1.00 25.45 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 29.566 5.364 47.338 1.00 23.00 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 28.218 5.115 47.124 1.00 21.77 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 27.159 6.006 46.845 1.00 24.27 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 27.206 7.232 46.710 1.00 23.78 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 25.948 5.337 46.715 1.00 23.25 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 25.778 3.979 46.834 1.00 25.57 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 24.523 3.514 46.684 1.00 25.63 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 26.764 3.135 47.085 1.00 23.86 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 27.947 3.768 47.218 1.00 23.58 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 30.716 -2.071 46.817 1.00 33.34 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 30.481 -3.430 47.384 1.00 35.73 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 32.043 -1.729 46.246 1.00 34.97 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 29.619 -1.780 45.706 1.00 31.93 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 28.246 -2.004 45.976 1.00 26.57 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 27.405 -1.485 44.836 1.00 27.52 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 27.355 -0.041 44.892 1.00 26.62 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 27.909 -1.842 43.432 1.00 26.29 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 26.814 -2.404 42.716 1.00 30.24 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 28.314 -0.501 42.832 1.00 27.69 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 27.401 0.459 43.582 1.00 25.50 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 27.846 1.855 43.671 1.00 24.50 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 26.876 2.857 43.633 1.00 24.91 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 25.683 2.526 43.533 1.00 24.88 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 27.260 4.148 43.712 1.00 23.76 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 28.558 4.454 43.825 1.00 24.04 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 28.905 5.744 43.879 1.00 22.03 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 29.566 3.450 43.880 1.00 23.33 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 29.169 2.175 43.798 1.00 23.95 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? 27.022 -2.968 41.231 1.00 29.46 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 25.997 -4.022 41.067 1.00 33.31 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 28.460 -3.285 40.996 1.00 30.67 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 26.654 -1.729 40.301 1.00 29.89 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 25.354 -1.156 40.350 1.00 26.07 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 25.349 0.182 39.656 1.00 27.50 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 26.412 1.008 40.189 1.00 26.06 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 25.573 0.130 38.145 1.00 27.89 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 24.723 1.119 37.555 1.00 29.88 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 27.029 0.533 38.002 1.00 27.70 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 27.155 1.555 39.113 1.00 25.69 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 28.517 1.796 39.581 1.00 24.58 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 29.556 0.896 39.633 1.00 23.76 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 30.662 1.417 40.091 1.00 26.26 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 30.334 2.745 40.350 1.00 25.66 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 31.148 3.829 40.787 1.00 23.32 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 32.348 3.819 41.094 1.00 27.49 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 30.424 5.017 40.853 1.00 24.85 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 29.091 5.146 40.556 1.00 23.59 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 28.565 6.365 40.714 1.00 24.14 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 28.324 4.149 40.140 1.00 24.47 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 29.010 2.986 40.056 1.00 24.40 ? 3 DG A C4 1 ATOM 61 P P . DA A 1 4 ? 24.559 1.211 35.961 1.00 29.80 ? 4 DA A P 1 ATOM 62 O OP1 . DA A 1 4 ? 23.123 0.954 35.673 1.00 34.08 ? 4 DA A OP1 1 ATOM 63 O OP2 . DA A 1 4 ? 25.604 0.411 35.275 1.00 32.35 ? 4 DA A OP2 1 ATOM 64 O "O5'" . DA A 1 4 ? 24.812 2.754 35.674 1.00 30.95 ? 4 DA A "O5'" 1 ATOM 65 C "C5'" . DA A 1 4 ? 24.004 3.744 36.306 1.00 30.39 ? 4 DA A "C5'" 1 ATOM 66 C "C4'" . DA A 1 4 ? 24.768 5.043 36.425 1.00 29.06 ? 4 DA A "C4'" 1 ATOM 67 O "O4'" . DA A 1 4 ? 25.879 4.884 37.325 1.00 27.66 ? 4 DA A "O4'" 1 ATOM 68 C "C3'" . DA A 1 4 ? 25.395 5.548 35.132 1.00 30.49 ? 4 DA A "C3'" 1 ATOM 69 O "O3'" A DA A 1 4 ? 24.461 6.307 34.365 0.50 31.15 ? 4 DA A "O3'" 1 ATOM 70 O "O3'" B DA A 1 4 ? 24.437 6.359 34.454 0.50 33.27 ? 4 DA A "O3'" 1 ATOM 71 C "C2'" . DA A 1 4 ? 26.520 6.432 35.639 1.00 26.97 ? 4 DA A "C2'" 1 ATOM 72 C "C1'" . DA A 1 4 ? 26.907 5.797 36.974 1.00 29.05 ? 4 DA A "C1'" 1 ATOM 73 N N9 . DA A 1 4 ? 28.156 5.046 36.928 1.00 27.64 ? 4 DA A N9 1 ATOM 74 C C8 . DA A 1 4 ? 28.330 3.736 36.570 1.00 28.41 ? 4 DA A C8 1 ATOM 75 N N7 . DA A 1 4 ? 29.571 3.330 36.652 1.00 28.90 ? 4 DA A N7 1 ATOM 76 C C5 . DA A 1 4 ? 30.261 4.451 37.090 1.00 29.53 ? 4 DA A C5 1 ATOM 77 C C6 . DA A 1 4 ? 31.614 4.662 37.394 1.00 30.21 ? 4 DA A C6 1 ATOM 78 N N6 . DA A 1 4 ? 32.540 3.713 37.304 1.00 33.81 ? 4 DA A N6 1 ATOM 79 N N1 . DA A 1 4 ? 31.982 5.892 37.805 1.00 32.61 ? 4 DA A N1 1 ATOM 80 C C2 . DA A 1 4 ? 31.038 6.836 37.914 1.00 32.55 ? 4 DA A C2 1 ATOM 81 N N3 . DA A 1 4 ? 29.731 6.753 37.667 1.00 30.95 ? 4 DA A N3 1 ATOM 82 C C4 . DA A 1 4 ? 29.406 5.518 37.254 1.00 29.44 ? 4 DA A C4 1 ATOM 83 P P A DA A 1 5 ? 24.339 6.051 32.781 0.50 32.76 ? 5 DA A P 1 ATOM 84 P P B DA A 1 5 ? 24.056 6.034 32.933 0.50 36.26 ? 5 DA A P 1 ATOM 85 O OP1 A DA A 1 5 ? 23.251 6.915 32.248 0.50 36.23 ? 5 DA A OP1 1 ATOM 86 O OP1 B DA A 1 5 ? 23.234 7.159 32.415 0.50 38.66 ? 5 DA A OP1 1 ATOM 87 O OP2 A DA A 1 5 ? 24.285 4.584 32.565 0.50 32.83 ? 5 DA A OP2 1 ATOM 88 O OP2 B DA A 1 5 ? 23.527 4.650 32.879 0.50 38.20 ? 5 DA A OP2 1 ATOM 89 O "O5'" A DA A 1 5 ? 25.731 6.558 32.196 0.50 33.68 ? 5 DA A "O5'" 1 ATOM 90 O "O5'" B DA A 1 5 ? 25.463 6.049 32.195 0.50 37.76 ? 5 DA A "O5'" 1 ATOM 91 C "C5'" A DA A 1 5 ? 26.124 7.921 32.311 0.50 34.24 ? 5 DA A "C5'" 1 ATOM 92 C "C5'" B DA A 1 5 ? 25.552 6.324 30.805 0.50 38.52 ? 5 DA A "C5'" 1 ATOM 93 C "C4'" A DA A 1 5 ? 27.060 8.296 31.184 0.50 34.17 ? 5 DA A "C4'" 1 ATOM 94 C "C4'" B DA A 1 5 ? 26.570 7.411 30.560 0.50 37.93 ? 5 DA A "C4'" 1 ATOM 95 O "O4'" A DA A 1 5 ? 28.266 7.494 31.224 0.50 34.30 ? 5 DA A "O4'" 1 ATOM 96 O "O4'" B DA A 1 5 ? 27.869 6.949 30.998 0.50 38.50 ? 5 DA A "O4'" 1 ATOM 97 C "C3'" A DA A 1 5 ? 26.492 8.125 29.772 0.50 35.28 ? 5 DA A "C3'" 1 ATOM 98 C "C3'" B DA A 1 5 ? 26.724 7.781 29.086 0.50 37.86 ? 5 DA A "C3'" 1 ATOM 99 O "O3'" A DA A 1 5 ? 26.939 9.210 28.961 0.50 34.97 ? 5 DA A "O3'" 1 ATOM 100 O "O3'" B DA A 1 5 ? 26.930 9.187 28.952 0.50 36.44 ? 5 DA A "O3'" 1 ATOM 101 C "C2'" A DA A 1 5 ? 27.170 6.861 29.280 0.50 34.05 ? 5 DA A "C2'" 1 ATOM 102 C "C2'" B DA A 1 5 ? 27.955 7.012 28.654 0.50 37.91 ? 5 DA A "C2'" 1 ATOM 103 C "C1'" A DA A 1 5 ? 28.533 7.032 29.910 0.50 34.15 ? 5 DA A "C1'" 1 ATOM 104 C "C1'" B DA A 1 5 ? 28.791 6.982 29.919 0.50 37.83 ? 5 DA A "C1'" 1 ATOM 105 N N9 A DA A 1 5 ? 29.331 5.812 30.006 0.50 33.59 ? 5 DA A N9 1 ATOM 106 N N9 B DA A 1 5 ? 29.647 5.802 30.025 0.50 37.35 ? 5 DA A N9 1 ATOM 107 C C8 A DA A 1 5 ? 28.922 4.513 29.841 0.50 33.55 ? 5 DA A C8 1 ATOM 108 C C8 B DA A 1 5 ? 29.286 4.488 29.872 0.50 37.04 ? 5 DA A C8 1 ATOM 109 N N7 A DA A 1 5 ? 29.887 3.638 29.962 0.50 34.10 ? 5 DA A N7 1 ATOM 110 N N7 B DA A 1 5 ? 30.281 3.649 30.002 0.50 37.38 ? 5 DA A N7 1 ATOM 111 C C5 A DA A 1 5 ? 31.008 4.413 30.227 0.50 33.51 ? 5 DA A C5 1 ATOM 112 C C5 B DA A 1 5 ? 31.373 4.464 30.262 0.50 37.15 ? 5 DA A C5 1 ATOM 113 C C6 A DA A 1 5 ? 32.365 4.088 30.375 0.50 33.98 ? 5 DA A C6 1 ATOM 114 C C6 B DA A 1 5 ? 32.737 4.185 30.454 0.50 37.17 ? 5 DA A C6 1 ATOM 115 N N6 A DA A 1 5 ? 32.834 2.840 30.337 0.50 35.48 ? 5 DA A N6 1 ATOM 116 N N6 B DA A 1 5 ? 33.250 2.955 30.440 0.50 38.53 ? 5 DA A N6 1 ATOM 117 N N1 A DA A 1 5 ? 33.236 5.102 30.563 0.50 34.76 ? 5 DA A N1 1 ATOM 118 N N1 B DA A 1 5 ? 33.568 5.228 30.660 0.50 38.37 ? 5 DA A N1 1 ATOM 119 C C2 A DA A 1 5 ? 32.764 6.354 30.595 0.50 33.38 ? 5 DA A C2 1 ATOM 120 C C2 B DA A 1 5 ? 33.053 6.464 30.669 0.50 37.08 ? 5 DA A C2 1 ATOM 121 N N3 A DA A 1 5 ? 31.515 6.785 30.459 0.50 33.86 ? 5 DA A N3 1 ATOM 122 N N3 B DA A 1 5 ? 31.793 6.853 30.495 0.50 37.28 ? 5 DA A N3 1 ATOM 123 C C4 A DA A 1 5 ? 30.676 5.752 30.272 0.50 33.14 ? 5 DA A C4 1 ATOM 124 C C4 B DA A 1 5 ? 30.994 5.792 30.291 0.50 36.62 ? 5 DA A C4 1 ATOM 125 P P . DA A 1 6 ? 25.880 10.062 28.113 1.00 36.01 ? 6 DA A P 1 ATOM 126 O OP1 . DA A 1 6 ? 24.731 10.393 28.996 1.00 37.98 ? 6 DA A OP1 1 ATOM 127 O OP2 . DA A 1 6 ? 25.640 9.339 26.835 1.00 36.05 ? 6 DA A OP2 1 ATOM 128 O "O5'" . DA A 1 6 ? 26.682 11.390 27.779 1.00 33.58 ? 6 DA A "O5'" 1 ATOM 129 C "C5'" . DA A 1 6 ? 26.935 12.350 28.788 1.00 34.24 ? 6 DA A "C5'" 1 ATOM 130 C "C4'" . DA A 1 6 ? 27.069 13.713 28.161 1.00 32.26 ? 6 DA A "C4'" 1 ATOM 131 O "O4'" . DA A 1 6 ? 28.322 13.784 27.445 1.00 30.73 ? 6 DA A "O4'" 1 ATOM 132 C "C3'" . DA A 1 6 ? 25.985 14.046 27.142 1.00 32.35 ? 6 DA A "C3'" 1 ATOM 133 O "O3'" . DA A 1 6 ? 25.723 15.444 27.258 1.00 35.34 ? 6 DA A "O3'" 1 ATOM 134 C "C2'" . DA A 1 6 ? 26.623 13.660 25.814 1.00 31.20 ? 6 DA A "C2'" 1 ATOM 135 C "C1'" . DA A 1 6 ? 28.100 13.950 26.054 1.00 29.26 ? 6 DA A "C1'" 1 ATOM 136 N N9 . DA A 1 6 ? 29.067 13.097 25.367 1.00 27.54 ? 6 DA A N9 1 ATOM 137 C C8 . DA A 1 6 ? 28.991 11.757 25.062 1.00 26.08 ? 6 DA A C8 1 ATOM 138 N N7 . DA A 1 6 ? 30.082 11.283 24.504 1.00 24.05 ? 6 DA A N7 1 ATOM 139 C C5 . DA A 1 6 ? 30.925 12.386 24.429 1.00 24.55 ? 6 DA A C5 1 ATOM 140 C C6 . DA A 1 6 ? 32.276 12.520 24.062 1.00 24.92 ? 6 DA A C6 1 ATOM 141 N N6 . DA A 1 6 ? 33.014 11.520 23.566 1.00 23.04 ? 6 DA A N6 1 ATOM 142 N N1 . DA A 1 6 ? 32.853 13.730 24.223 1.00 27.07 ? 6 DA A N1 1 ATOM 143 C C2 . DA A 1 6 ? 32.118 14.729 24.722 1.00 25.00 ? 6 DA A C2 1 ATOM 144 N N3 . DA A 1 6 ? 30.847 14.726 25.108 1.00 26.44 ? 6 DA A N3 1 ATOM 145 C C4 . DA A 1 6 ? 30.301 13.512 24.938 1.00 24.02 ? 6 DA A C4 1 ATOM 146 P P . DG A 1 7 ? 24.629 16.147 26.316 1.00 35.41 ? 7 DG A P 1 ATOM 147 O OP1 . DG A 1 7 ? 24.237 17.413 27.008 1.00 37.34 ? 7 DG A OP1 1 ATOM 148 O OP2 . DG A 1 7 ? 23.587 15.155 25.951 1.00 33.55 ? 7 DG A OP2 1 ATOM 149 O "O5'" . DG A 1 7 ? 25.463 16.548 25.028 1.00 33.70 ? 7 DG A "O5'" 1 ATOM 150 C "C5'" . DG A 1 7 ? 26.697 17.239 25.167 1.00 33.51 ? 7 DG A "C5'" 1 ATOM 151 C "C4'" . DG A 1 7 ? 27.397 17.309 23.835 1.00 33.03 ? 7 DG A "C4'" 1 ATOM 152 O "O4'" . DG A 1 7 ? 27.970 16.018 23.546 1.00 33.25 ? 7 DG A "O4'" 1 ATOM 153 C "C3'" . DG A 1 7 ? 26.465 17.640 22.669 1.00 33.59 ? 7 DG A "C3'" 1 ATOM 154 O "O3'" . DG A 1 7 ? 26.816 18.934 22.182 1.00 35.97 ? 7 DG A "O3'" 1 ATOM 155 C "C2'" . DG A 1 7 ? 26.721 16.542 21.641 1.00 30.26 ? 7 DG A "C2'" 1 ATOM 156 C "C1'" . DG A 1 7 ? 27.954 15.814 22.155 1.00 29.94 ? 7 DG A "C1'" 1 ATOM 157 N N9 . DG A 1 7 ? 27.940 14.374 21.933 1.00 26.81 ? 7 DG A N9 1 ATOM 158 C C8 . DG A 1 7 ? 26.865 13.523 22.036 1.00 26.60 ? 7 DG A C8 1 ATOM 159 N N7 . DG A 1 7 ? 27.175 12.275 21.796 1.00 25.15 ? 7 DG A N7 1 ATOM 160 C C5 . DG A 1 7 ? 28.534 12.311 21.515 1.00 25.00 ? 7 DG A C5 1 ATOM 161 C C6 . DG A 1 7 ? 29.429 11.265 21.203 1.00 24.11 ? 7 DG A C6 1 ATOM 162 O O6 . DG A 1 7 ? 29.186 10.053 21.081 1.00 24.54 ? 7 DG A O6 1 ATOM 163 N N1 . DG A 1 7 ? 30.722 11.742 21.016 1.00 23.25 ? 7 DG A N1 1 ATOM 164 C C2 . DG A 1 7 ? 31.104 13.053 21.098 1.00 24.98 ? 7 DG A C2 1 ATOM 165 N N2 . DG A 1 7 ? 32.400 13.312 20.853 1.00 25.17 ? 7 DG A N2 1 ATOM 166 N N3 . DG A 1 7 ? 30.277 14.041 21.392 1.00 25.80 ? 7 DG A N3 1 ATOM 167 C C4 . DG A 1 7 ? 29.018 13.600 21.588 1.00 25.87 ? 7 DG A C4 1 ATOM 168 P P . DC A 1 8 ? 26.061 19.558 20.912 1.00 35.87 ? 8 DC A P 1 ATOM 169 O OP1 . DC A 1 8 ? 25.960 21.013 21.197 1.00 39.36 ? 8 DC A OP1 1 ATOM 170 O OP2 . DC A 1 8 ? 24.827 18.777 20.636 1.00 34.20 ? 8 DC A OP2 1 ATOM 171 O "O5'" . DC A 1 8 ? 27.120 19.376 19.743 1.00 34.56 ? 8 DC A "O5'" 1 ATOM 172 C "C5'" . DC A 1 8 ? 28.482 19.732 19.962 1.00 34.31 ? 8 DC A "C5'" 1 ATOM 173 C "C4'" . DC A 1 8 ? 29.391 18.989 19.013 1.00 32.56 ? 8 DC A "C4'" 1 ATOM 174 O "O4'" . DC A 1 8 ? 29.581 17.620 19.430 1.00 30.63 ? 8 DC A "O4'" 1 ATOM 175 C "C3'" . DC A 1 8 ? 28.889 18.865 17.585 1.00 32.49 ? 8 DC A "C3'" 1 ATOM 176 O "O3'" . DC A 1 8 ? 29.136 20.075 16.873 1.00 35.10 ? 8 DC A "O3'" 1 ATOM 177 C "C2'" . DC A 1 8 ? 29.736 17.718 17.055 1.00 31.71 ? 8 DC A "C2'" 1 ATOM 178 C "C1'" . DC A 1 8 ? 30.075 16.894 18.306 1.00 28.69 ? 8 DC A "C1'" 1 ATOM 179 N N1 . DC A 1 8 ? 29.443 15.563 18.306 1.00 25.97 ? 8 DC A N1 1 ATOM 180 C C2 . DC A 1 8 ? 30.244 14.436 18.103 1.00 25.79 ? 8 DC A C2 1 ATOM 181 O O2 . DC A 1 8 ? 31.461 14.580 17.965 1.00 24.38 ? 8 DC A O2 1 ATOM 182 N N3 . DC A 1 8 ? 29.673 13.223 18.065 1.00 23.07 ? 8 DC A N3 1 ATOM 183 C C4 . DC A 1 8 ? 28.360 13.096 18.220 1.00 24.80 ? 8 DC A C4 1 ATOM 184 N N4 . DC A 1 8 ? 27.845 11.868 18.158 1.00 23.43 ? 8 DC A N4 1 ATOM 185 C C5 . DC A 1 8 ? 27.515 14.222 18.444 1.00 23.02 ? 8 DC A C5 1 ATOM 186 C C6 . DC A 1 8 ? 28.095 15.428 18.482 1.00 24.96 ? 8 DC A C6 1 HETATM 187 MG MG . MG B 2 . ? 28.784 11.189 42.633 1.00 40.49 ? 101 MG A MG 1 HETATM 188 O O . HOH C 3 . ? 36.967 0.804 54.271 0.25 65.47 ? 102 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 17.806 16.392 32.150 0.13 44.57 ? 103 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 19.372 18.888 25.846 0.25 60.53 ? 104 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 18.912 17.466 35.253 0.25 51.25 ? 105 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 34.714 2.308 40.726 1.00 82.38 ? 106 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 31.154 7.592 41.714 1.00 28.05 ? 107 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 31.676 6.459 44.302 1.00 29.24 ? 108 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 34.423 7.544 38.395 1.00 35.22 ? 109 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 35.253 5.210 37.352 1.00 63.82 ? 110 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 28.229 9.063 38.795 1.00 30.64 ? 111 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 29.889 16.950 26.389 1.00 49.27 ? 112 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 34.356 5.699 41.496 1.00 35.91 ? 113 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 28.102 -3.647 49.249 1.00 39.93 ? 114 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 36.472 5.225 43.488 1.00 44.72 ? 115 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 31.570 16.554 21.858 1.00 36.70 ? 116 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 23.722 13.663 23.655 1.00 50.93 ? 117 HOH A O 1 HETATM 204 O O . HOH C 3 . ? 22.674 12.610 28.478 1.00 52.10 ? 118 HOH A O 1 HETATM 205 O O . HOH C 3 . ? 22.268 1.739 41.169 1.00 47.89 ? 119 HOH A O 1 HETATM 206 O O . HOH C 3 . ? 30.400 6.922 50.749 1.00 43.73 ? 120 HOH A O 1 HETATM 207 O O . HOH C 3 . ? 24.469 0.747 45.682 1.00 32.53 ? 121 HOH A O 1 HETATM 208 O O . HOH C 3 . ? 20.838 4.949 30.858 1.00 70.18 ? 122 HOH A O 1 HETATM 209 O O . HOH C 3 . ? 21.703 2.224 49.588 1.00 41.69 ? 123 HOH A O 1 HETATM 210 O O . HOH C 3 . ? 27.540 10.554 49.326 1.00 56.29 ? 124 HOH A O 1 HETATM 211 O O . HOH C 3 . ? 21.777 0.471 38.913 1.00 62.26 ? 125 HOH A O 1 HETATM 212 O O . HOH C 3 . ? 35.346 4.279 51.253 1.00 45.31 ? 126 HOH A O 1 HETATM 213 O O . HOH C 3 . ? 21.429 7.225 35.161 1.00 45.16 ? 127 HOH A O 1 HETATM 214 O O . HOH C 3 . ? 19.692 3.324 51.089 1.00 54.92 ? 128 HOH A O 1 HETATM 215 O O . HOH C 3 . ? 32.971 5.253 49.716 1.00 46.39 ? 129 HOH A O 1 HETATM 216 O O . HOH C 3 . ? 26.107 12.734 49.633 1.00 36.18 ? 130 HOH A O 1 HETATM 217 O O . HOH C 3 . ? 34.115 10.080 32.398 1.00 48.28 ? 131 HOH A O 1 HETATM 218 O O . HOH C 3 . ? 32.678 3.803 45.365 1.00 46.91 ? 132 HOH A O 1 HETATM 219 O O . HOH C 3 . ? 31.783 4.165 53.284 1.00 45.11 ? 133 HOH A O 1 HETATM 220 O O . HOH C 3 . ? 29.753 12.430 38.493 1.00 38.71 ? 134 HOH A O 1 HETATM 221 O O . HOH C 3 . ? 31.678 10.330 38.568 1.00 37.85 ? 135 HOH A O 1 HETATM 222 O O . HOH C 3 . ? 27.421 15.220 40.568 1.00 44.12 ? 136 HOH A O 1 HETATM 223 O O . HOH C 3 . ? 19.027 5.394 53.801 1.00 39.48 ? 137 HOH A O 1 HETATM 224 O O . HOH C 3 . ? 24.649 10.616 31.847 1.00 41.31 ? 138 HOH A O 1 HETATM 225 O O . HOH C 3 . ? 38.257 4.305 53.813 1.00 40.11 ? 139 HOH A O 1 HETATM 226 O O . HOH C 3 . ? 37.757 6.655 35.890 1.00 44.48 ? 140 HOH A O 1 HETATM 227 O O . HOH C 3 . ? 24.326 -1.590 47.037 1.00 51.69 ? 141 HOH A O 1 HETATM 228 O O . HOH C 3 . ? 38.990 3.993 43.171 1.00 38.44 ? 142 HOH A O 1 HETATM 229 O O . HOH C 3 . ? 21.269 2.628 53.320 1.00 45.68 ? 143 HOH A O 1 HETATM 230 O O . HOH C 3 . ? 25.890 12.501 39.631 1.00 39.28 ? 144 HOH A O 1 HETATM 231 O O . HOH C 3 . ? 38.591 1.158 43.430 1.00 39.21 ? 145 HOH A O 1 HETATM 232 O O . HOH C 3 . ? 38.186 8.896 34.025 1.00 59.64 ? 146 HOH A O 1 HETATM 233 O O . HOH C 3 . ? 32.130 9.269 31.258 1.00 41.94 ? 147 HOH A O 1 HETATM 234 O O . HOH C 3 . ? 20.947 1.993 36.884 1.00 51.09 ? 148 HOH A O 1 HETATM 235 O O . HOH C 3 . ? 21.713 17.099 24.574 1.00 61.69 ? 149 HOH A O 1 HETATM 236 O O . HOH C 3 . ? 33.492 9.541 36.916 1.00 48.25 ? 150 HOH A O 1 HETATM 237 O O . HOH C 3 . ? 36.297 1.536 31.470 0.25 63.78 ? 151 HOH A O 1 HETATM 238 O O . HOH C 3 . ? 35.502 1.852 52.128 1.00 62.95 ? 152 HOH A O 1 HETATM 239 O O . HOH C 3 . ? 21.329 3.246 33.459 1.00 75.39 ? 153 HOH A O 1 HETATM 240 O O . HOH C 3 . ? 36.049 3.170 55.197 1.00 64.37 ? 154 HOH A O 1 HETATM 241 O O . HOH C 3 . ? 19.790 4.525 36.003 1.00 55.58 ? 155 HOH A O 1 HETATM 242 O O . HOH C 3 . ? 22.592 12.607 33.487 1.00 52.71 ? 156 HOH A O 1 HETATM 243 O O . HOH C 3 . ? 18.080 3.474 38.707 1.00 58.50 ? 157 HOH A O 1 HETATM 244 O O . HOH C 3 . ? 18.624 6.092 40.482 1.00 56.06 ? 158 HOH A O 1 HETATM 245 O O . HOH C 3 . ? 36.444 4.318 40.004 1.00 53.09 ? 159 HOH A O 1 HETATM 246 O O . HOH C 3 . ? 19.808 14.193 34.553 1.00 60.59 ? 160 HOH A O 1 HETATM 247 O O . HOH C 3 . ? 36.000 4.110 30.884 1.00 77.57 ? 161 HOH A O 1 HETATM 248 O O . HOH C 3 . ? 28.129 9.950 44.156 1.00 42.28 ? 162 HOH A O 1 HETATM 249 O O . HOH C 3 . ? 30.744 10.815 43.151 1.00 41.33 ? 163 HOH A O 1 HETATM 250 O O . HOH C 3 . ? 28.745 12.798 43.927 1.00 42.40 ? 164 HOH A O 1 HETATM 251 O O . HOH C 3 . ? 29.424 12.428 41.112 1.00 42.84 ? 165 HOH A O 1 HETATM 252 O O . HOH C 3 . ? 26.823 11.551 42.094 1.00 41.60 ? 166 HOH A O 1 HETATM 253 O O . HOH C 3 . ? 28.825 9.563 41.359 1.00 39.27 ? 167 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MO6 A . C 3 HOH 1 102 1 HOH HOH A . C 3 HOH 2 103 2 HOH HOH A . C 3 HOH 3 104 3 HOH HOH A . C 3 HOH 4 105 4 HOH HOH A . C 3 HOH 5 106 5 HOH HOH A . C 3 HOH 6 107 6 HOH HOH A . C 3 HOH 7 108 7 HOH HOH A . C 3 HOH 8 109 8 HOH HOH A . C 3 HOH 9 110 9 HOH HOH A . C 3 HOH 10 111 10 HOH HOH A . C 3 HOH 11 112 11 HOH HOH A . C 3 HOH 12 113 12 HOH HOH A . C 3 HOH 13 114 13 HOH HOH A . C 3 HOH 14 115 14 HOH HOH A . C 3 HOH 15 116 15 HOH HOH A . C 3 HOH 16 117 16 HOH HOH A . C 3 HOH 17 118 17 HOH HOH A . C 3 HOH 18 119 18 HOH HOH A . C 3 HOH 19 120 19 HOH HOH A . C 3 HOH 20 121 20 HOH HOH A . C 3 HOH 21 122 21 HOH HOH A . C 3 HOH 22 123 22 HOH HOH A . C 3 HOH 23 124 23 HOH HOH A . C 3 HOH 24 125 24 HOH HOH A . C 3 HOH 25 126 25 HOH HOH A . C 3 HOH 26 127 26 HOH HOH A . C 3 HOH 27 128 27 HOH HOH A . C 3 HOH 28 129 28 HOH HOH A . C 3 HOH 29 130 29 HOH HOH A . C 3 HOH 30 131 30 HOH HOH A . C 3 HOH 31 132 32 HOH HOH A . C 3 HOH 32 133 33 HOH HOH A . C 3 HOH 33 134 34 HOH HOH A . C 3 HOH 34 135 36 HOH HOH A . C 3 HOH 35 136 37 HOH HOH A . C 3 HOH 36 137 38 HOH HOH A . C 3 HOH 37 138 40 HOH HOH A . C 3 HOH 38 139 41 HOH HOH A . C 3 HOH 39 140 42 HOH HOH A . C 3 HOH 40 141 43 HOH HOH A . C 3 HOH 41 142 44 HOH HOH A . C 3 HOH 42 143 46 HOH HOH A . C 3 HOH 43 144 47 HOH HOH A . C 3 HOH 44 145 48 HOH HOH A . C 3 HOH 45 146 49 HOH HOH A . C 3 HOH 46 147 50 HOH HOH A . C 3 HOH 47 148 52 HOH HOH A . C 3 HOH 48 149 53 HOH HOH A . C 3 HOH 49 150 54 HOH HOH A . C 3 HOH 50 151 56 HOH HOH A . C 3 HOH 51 152 57 HOH HOH A . C 3 HOH 52 153 59 HOH HOH A . C 3 HOH 53 154 61 HOH HOH A . C 3 HOH 54 155 63 HOH HOH A . C 3 HOH 55 156 64 HOH HOH A . C 3 HOH 56 157 65 HOH HOH A . C 3 HOH 57 158 66 HOH HOH A . C 3 HOH 58 159 70 HOH HOH A . C 3 HOH 59 160 71 HOH HOH A . C 3 HOH 60 161 72 HOH HOH A . C 3 HOH 61 162 1 HOH MO6 A . C 3 HOH 62 163 1 HOH MO6 A . C 3 HOH 63 164 1 HOH MO6 A . C 3 HOH 64 165 1 HOH MO6 A . C 3 HOH 65 166 1 HOH MO6 A . C 3 HOH 66 167 1 HOH MO6 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 36.9070000000 -1.0000000000 0.0000000000 0.0000000000 36.9070000000 0.0000000000 0.0000000000 -1.0000000000 64.3120000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? C HOH . ? A HOH 162 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 163 ? 1_555 90.4 ? 2 O ? C HOH . ? A HOH 162 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 164 ? 1_555 90.0 ? 3 O ? C HOH . ? A HOH 163 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 164 ? 1_555 90.1 ? 4 O ? C HOH . ? A HOH 162 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 165 ? 1_555 179.6 ? 5 O ? C HOH . ? A HOH 163 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 165 ? 1_555 90.0 ? 6 O ? C HOH . ? A HOH 164 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 165 ? 1_555 90.0 ? 7 O ? C HOH . ? A HOH 162 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 166 ? 1_555 89.8 ? 8 O ? C HOH . ? A HOH 163 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 166 ? 1_555 179.3 ? 9 O ? C HOH . ? A HOH 164 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 166 ? 1_555 90.5 ? 10 O ? C HOH . ? A HOH 165 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 166 ? 1_555 89.8 ? 11 O ? C HOH . ? A HOH 162 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 167 ? 1_555 89.4 ? 12 O ? C HOH . ? A HOH 163 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 167 ? 1_555 89.6 ? 13 O ? C HOH . ? A HOH 164 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 167 ? 1_555 179.3 ? 14 O ? C HOH . ? A HOH 165 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 167 ? 1_555 90.7 ? 15 O ? C HOH . ? A HOH 166 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? C HOH . ? A HOH 167 ? 1_555 89.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-09 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1UE4 'b-form double helix' 1UE4 'mismatched base pair' 1UE4 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 8_666 -0.343 -0.106 -0.014 -3.270 3.307 -2.319 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 8_666 0.200 -0.086 -0.245 12.646 5.663 -1.178 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 8_666 6.534 -4.304 1.162 30.075 -10.214 11.114 3 A_DG3:DA6_A A 3 ? A 6 ? 11 9 1 A DG 1 1_555 A DC 8 1_555 -0.343 -0.106 -0.014 -3.270 3.307 -2.319 4 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 1_555 0.200 -0.086 -0.245 12.646 5.663 -1.178 5 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 1_555 6.534 -4.304 1.162 30.075 -10.214 11.114 6 A_DG3:DA6_A A 3 ? A 6 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 8_666 A DC 2 1_555 A DG 7 8_666 0.068 -0.080 3.009 2.414 0.686 27.858 -0.315 0.386 3.001 1.420 -5.001 27.968 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 8_666 A DG 3 1_555 A DA 6 8_666 0.543 1.711 3.058 0.699 8.658 55.413 1.339 -0.539 3.276 9.247 -0.747 56.037 2 AA_DC2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 1 1_555 A DC 8 1_555 A DC 2 1_555 A DG 7 1_555 0.068 -0.080 3.009 2.414 0.686 27.858 -0.315 0.386 3.001 1.420 -5.001 27.968 3 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 1_555 A DG 3 1_555 A DA 6 1_555 0.543 1.711 3.058 0.699 8.658 55.413 1.339 -0.539 3.276 9.247 -0.747 56.037 4 AA_DC2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1UE2 _pdbx_initial_refinement_model.details 'PDB ENTRY 1UE2' #