0.026757
0.015448
0.000000
0.000000
0.030897
0.000000
0.000000
0.000000
0.015483
0.00000
0.00000
0.00000
Sunami, T.
Kondo, J.
Hirao, I.
Watanabe, K.
Miura, K.
Takenaka, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
37.373
37.373
64.587
Cl -1
35.453
CHLORIDE ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Co H18 N6 3
161.116
COBALT HEXAMMINE(III)
non-polymer
N
1
N
CL
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
MG
N
113
N
CO
N
114
N
N
N
115
N
N
N
116
N
N
N
117
N
N
N
118
N
N
N
119
N
N
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
60
90
96
10.1107/S0907444903024703
14684897
Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
2004
10.2210/pdb1ue3/pdb
pdb_00001ue3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-03-06
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9780
1.0
BL-18B
Photon Factory
0.9780
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
2460.644
5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3'
1
syn
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
161.116
COBALT HEXAMMINE(III)
1
syn
non-polymer
18.015
water
40
nat
water
no
no
(DG)(DC)(DG)(DA)(DA)(DA)(DG)(DC)
GCGAAAGC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
1
1.97
37.09
VAPOR DIFFUSION, HANGING DROP
7.0
magnesium chloride, spermine 4HCl, hexaamminecobalt(III) chloride, 2-methyl-2,4-pentanediol, sodium cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
magnesium chloride
1
spermine 4HCl
1
hexaamminecobalt(III) chloride
1
2-methyl-2,4-pentanediol
1
sodium cacodylate
1
magnesium chloride
2
spermine 4HCl
2
hexaamminecobalt(III) chloride
2
0.205
1
19
A
1
A
8
3.373
A_DG1:DC8_A
1
9.450
-0.406
-0.034
-0.224
16.177
1
19
A
2
A
7
1.006
A_DC2:DG7_A
2
3.689
0.377
-0.334
-0.175
31.300
9
11
A
3
A
6
7.499
A_DG3:DA6_A
3
-4.186
6.417
1.126
-4.372
0.205
1
19
A
1
A
8
3.373
A_DG1:DC8_A
4
9.450
-0.406
-0.034
-0.224
16.177
1
19
A
2
A
7
1.006
A_DC2:DG7_A
5
3.689
0.377
-0.334
-0.175
31.300
9
11
A
3
A
6
7.499
A_DG3:DA6_A
6
-4.185
6.417
1.126
-4.372
3.035
28.185
A
A
1
2
-1.806
A
A
8
7
3.052
-0.877
0.095
0.056
AA_DG1DC2:DG7DC8_AA
1
3.786
-7.799
27.921
0.307
0.632
3.232
52.157
A
A
2
3
9.730
A
A
7
6
3.078
8.518
0.638
1.469
AA_DC2DG3:DA6DG7_AA
2
-2.594
2.962
51.444
1.121
-0.893
3.035
28.185
A
A
1
2
-1.806
A
A
8
7
3.052
-0.877
0.095
0.056
AA_DG1DC2:DG7DC8_AA
3
3.786
-7.799
27.921
0.307
0.632
3.232
52.157
A
A
2
3
9.730
A
A
7
6
3.078
8.518
0.638
1.469
AA_DC2DG3:DA6DG7_AA
4
-2.594
2.962
51.444
1.121
-0.893
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-01-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The crystal structure of d(GI5CGAAAGCT)
The crystal structure of d(GCGAAAGC)
PDBJ
Y
PDBJ
2003-05-08
REL
REL
CL
CHLORIDE ION
MG
MAGNESIUM ION
NCO
COBALT HEXAMMINE(III)
HOH
water
1UE2
PDB ENTRY 1UE2
PDB
experimental model
CL
1
2
CL
CL
9
A
MO6
767
3
MG
MG
767
A
MO6
768
3
MG
MG
768
A
NCO
766
4
NCO
NCO
766
A
MO6
767
5
HOH
HOH
769
A
MO6
767
5
HOH
HOH
770
A
MO6
767
5
HOH
HOH
771
A
MO6
767
5
HOH
HOH
772
A
MO6
767
5
HOH
HOH
773
A
MO6
767
5
HOH
HOH
774
A
MO6
768
5
HOH
HOH
775
A
MO6
768
5
HOH
HOH
776
A
MO6
768
5
HOH
HOH
777
A
MO6
768
5
HOH
HOH
778
A
MO6
768
5
HOH
HOH
779
A
MO6
768
5
HOH
HOH
780
A
HOH
2
5
HOH
HOH
781
A
HOH
4
5
HOH
HOH
782
A
HOH
5
5
HOH
HOH
783
A
HOH
6
5
HOH
HOH
784
A
HOH
8
5
HOH
HOH
785
A
HOH
9
5
HOH
HOH
786
A
HOH
10
5
HOH
HOH
787
A
HOH
11
5
HOH
HOH
788
A
HOH
12
5
HOH
HOH
789
A
HOH
13
5
HOH
HOH
790
A
HOH
14
5
HOH
HOH
791
A
HOH
15
5
HOH
HOH
792
A
HOH
18
5
HOH
HOH
793
A
HOH
19
5
HOH
HOH
794
A
HOH
20
5
HOH
HOH
795
A
HOH
21
5
HOH
HOH
796
A
HOH
22
5
HOH
HOH
797
A
HOH
23
5
HOH
HOH
798
A
HOH
24
5
HOH
HOH
799
A
HOH
25
5
HOH
HOH
800
A
HOH
26
5
HOH
HOH
801
A
HOH
32
5
HOH
HOH
802
A
HOH
33
5
HOH
HOH
803
A
HOH
34
5
HOH
HOH
804
A
HOH
35
5
HOH
HOH
805
A
HOH
36
5
HOH
HOH
806
A
HOH
37
5
HOH
HOH
807
A
HOH
38
5
HOH
HOH
808
A
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
A
4
n
4
DA
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
G
7
n
7
DG
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
A
HOH
769
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
770
F
O
HOH
1_555
90.7
A
HOH
769
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
771
F
O
HOH
1_555
89.6
A
HOH
770
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
771
F
O
HOH
1_555
90.6
A
HOH
769
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
772
F
O
HOH
1_555
179.6
A
HOH
770
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
772
F
O
HOH
1_555
89.5
A
HOH
771
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
772
F
O
HOH
1_555
90.1
A
HOH
769
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
773
F
O
HOH
1_555
89.6
A
HOH
770
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
773
F
O
HOH
1_555
179.6
A
HOH
771
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
773
F
O
HOH
1_555
89.7
A
HOH
772
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
773
F
O
HOH
1_555
90.1
A
HOH
769
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
90.4
A
HOH
770
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
89.7
A
HOH
771
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
179.7
A
HOH
772
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
89.9
A
HOH
773
F
O
HOH
1_555
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
90.1
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
3_565
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
2_665
86.4
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
2_665
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
1_555
90.0
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
1_555
82.6
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
1_555
5.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
2_665
82.6
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
2_665
5.4
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
2_665
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
5.4
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
90.0
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
82.6
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
86.4
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
90.0
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
171.7
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
85.9
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
90.0
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
171.7
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
85.9
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
85.9
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
90.0
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
171.8
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
171.7
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
85.9
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
90.0
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
97.2
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
171.8
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
85.9
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
85.9
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
171.7
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
97.2
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
97.2
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
180.0
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
93.6
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
93.6
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
90.0
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
97.4
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
174.6
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
90.0
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
94.1
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
8.2
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
93.6
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
93.6
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
180.0
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
174.6
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
97.4
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
94.1
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
8.2
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
90.0
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
93.6
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
180.0
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
93.5
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
97.4
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
174.6
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
90.0
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
8.2
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
90.0
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
94.1
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
86.4
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
90.0
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
97.4
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
174.6
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
180.0
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
93.6
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
93.6
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
90.0
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
8.3
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
94.1
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
90.0
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
5.4
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
82.6
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
174.6
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
90.0
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
97.4
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
93.6
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
93.6
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
180.0
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
94.1
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
90.0
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
8.3
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
5.4
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
82.6
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
90.0
A
HOH
779
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
97.4
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
174.6
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
93.6
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
180.0
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
93.6
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
8.2
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
94.1
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
90.0
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
82.6
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
90.0
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
5.4
A
HOH
779
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
86.4
A
HOH
779
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
86.4
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
90.0
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
8.3
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
94.1
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
90.0
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
8.3
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
94.1
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
180.0
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
82.8
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
82.8
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
90.0
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
85.9
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
171.8
A
HOH
779
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
90.0
A
HOH
779
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
85.9
A
HOH
779
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
171.8
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
94.1
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
90.0
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
8.3
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
8.3
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
94.1
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
90.0
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
82.8
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
180.0
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
82.8
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
85.9
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
171.7
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
90.0
A
HOH
779
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
171.7
A
HOH
779
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
90.0
A
HOH
779
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
85.9
A
HOH
780
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
97.2
A
HOH
775
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
8.3
A
HOH
775
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
94.1
A
HOH
775
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
94.1
A
HOH
776
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
90.0
A
HOH
776
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
8.3
A
HOH
777
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
82.8
A
HOH
777
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
82.8
A
HOH
777
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
180.0
A
HOH
778
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
171.7
A
HOH
778
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
90.0
A
HOH
778
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
85.9
A
HOH
779
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
85.9
A
HOH
779
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
171.8
A
HOH
779
F
O
HOH
2_665
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
90.0
A
HOH
780
F
O
HOH
1_555
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
97.2
A
HOH
780
F
O
HOH
3_565
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
97.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
18.6865000000
32.3659674156
32.2935000000
1
A
CL
9
B
CL
1
A
MG
768
D
MG
1
A
NCO
766
E
NCO
1
A
HOH
781
F
HOH
1
A
HOH
782
F
HOH
0.2389
0.2272
2.15
10
146
1661
1538
RANDOM
1
3
MOLECULAR REPLACEMENT
PDB ENTRY 1UE2
G. PARKINSON ET AL., (1996) ACTACRYST. D52, 57-64
2.15
10
28
236
22
186
0
0.007
1.0
0.2322
0.2282
2.23
13
2.1
32
1UE3
1817
1817
0.044
1
6.2
100
0.393
2.10
2.21
1.9
100
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
refinement
CNS
data scaling
CCP4
(SCALA)
Crystal structure of d(GCGAAAGC) containing hexaamminecobalt
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
metalc
2.071
A
MG
767
C
MG
MG
1_555
A
HOH
769
F
O
HOH
1_555
metalc
2.068
A
MG
767
C
MG
MG
1_555
A
HOH
770
F
O
HOH
1_555
metalc
2.060
A
MG
767
C
MG
MG
1_555
A
HOH
771
F
O
HOH
1_555
metalc
2.058
A
MG
767
C
MG
MG
1_555
A
HOH
772
F
O
HOH
1_555
metalc
2.060
A
MG
767
C
MG
MG
1_555
A
HOH
773
F
O
HOH
1_555
metalc
2.063
A
MG
767
C
MG
MG
1_555
A
HOH
774
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
775
F
O
HOH
2_665
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
1_555
metalc
2.059
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
2_665
metalc
2.059
A
MG
768
D
MG
MG
1_555
A
HOH
776
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
777
F
O
HOH
2_665
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
2_665
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
778
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
779
F
O
HOH
2_665
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
1_555
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
3_565
metalc
2.060
A
MG
768
D
MG
MG
1_555
A
HOH
780
F
O
HOH
2_665
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
8_665
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
8_665
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
8_665
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
7
A
N1
DG
7
8_665
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
7
A
O6
DG
7
8_665
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
7
A
N2
DG
7
8_665
hydrog
TYPE_11_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DA
6
A
N7
DA
6
8_665
hydrog
TYPE_11_PAIR
A
DG
3
A
N3
DG
3
1_555
A
DA
6
A
N6
DA
6
8_665
hydrog
TYPE_11_PAIR
A
DA
6
A
N6
DA
6
1_555
A
DG
3
A
N3
DG
3
8_665
hydrog
TYPE_11_PAIR
A
DA
6
A
N7
DA
6
1_555
A
DG
3
A
N2
DG
3
8_665
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
A
DC
2
A
N3
DC
2
8_665
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
A
DC
2
A
O2
DC
2
8_665
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
A
DC
2
A
N4
DC
2
8_665
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
8_665
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
8_665
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
8_665
DNA
DNA, base-intercalated duplex, mini-hairpin structure, sheared G:A pair, zipper-like duplex
1UE3
PDB
1
1UE3
1
8
1UE3
1
8
1UE3
A
1
1
8
BINDING SITE FOR RESIDUE CL A 9
A
CL
9
Software
6
BINDING SITE FOR RESIDUE MG A 767
A
MG
767
Software
6
BINDING SITE FOR RESIDUE MG A 768
A
MG
768
Software
18
BINDING SITE FOR RESIDUE NCO A 766
A
NCO
766
Software
6
A
DA
4
A
DA
4
6
1_555
A
DA
4
A
DA
4
6
2_655
A
DA
4
A
DA
4
6
3_665
A
NCO
766
E
NCO
6
3_665
A
NCO
766
E
NCO
6
2_655
A
NCO
766
E
NCO
6
1_555
A
HOH
769
F
HOH
6
1_555
A
HOH
770
F
HOH
6
1_555
A
HOH
771
F
HOH
6
1_555
A
HOH
772
F
HOH
6
1_555
A
HOH
773
F
HOH
6
1_555
A
HOH
774
F
HOH
6
1_555
A
HOH
775
F
HOH
18
2_665
A
HOH
775
F
HOH
18
3_565
A
HOH
775
F
HOH
18
1_555
A
HOH
776
F
HOH
18
2_665
A
HOH
776
F
HOH
18
1_555
A
HOH
776
F
HOH
18
3_565
A
HOH
777
F
HOH
18
3_565
A
HOH
777
F
HOH
18
1_555
A
HOH
777
F
HOH
18
2_665
A
HOH
778
F
HOH
18
1_555
A
HOH
778
F
HOH
18
2_665
A
HOH
778
F
HOH
18
3_565
A
HOH
779
F
HOH
18
1_555
A
HOH
779
F
HOH
18
2_665
A
HOH
779
F
HOH
18
3_565
A
HOH
780
F
HOH
18
3_565
A
HOH
780
F
HOH
18
2_665
A
HOH
780
F
HOH
18
1_555
A
DG
3
A
DG
3
6
1_555
A
DG
3
A
DG
3
6
2_655
A
DG
3
A
DG
3
6
3_665
A
CL
9
B
CL
6
3_665
A
CL
9
B
CL
6
2_655
A
CL
9
B
CL
6
1_555
182
P 63 2 2