0.012734
0.000000
0.000000
0.000000
0.012734
0.000000
0.000000
0.000000
0.026497
0.000000
0.000000
0.000000
Prange, T.
Schiltz, M.
Pernot, L.
Colloc'h, N.
Longhi, S.
Bourguet, W.
Fourme, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.530
78.530
37.740
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
Kr
83.798
KRYPTON
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
30
61
73
10.1002/(SICI)1097-0134(19980101)30:1<61::AID-PROT6>3.3.CO;2-O
9443341
Exploring hydrophobic sites in proteins with xenon or krypton.
1998
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
51
98
109
10.1107/S0907444994009261
The Influence of Temperature on Lysozyme Crystals. Structure and Dynamics of Protein and Water.
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.0
1
IMAGE PLATE
1996-02-10
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.962
1.0
DW32
LURE
0.962
SYNCHROTRON
LURE BEAMLINE DW32
14331.160
LYSOZYME
3.2.1.17
1
nat
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
4
syn
non-polymer
83.798
KRYPTON
1
syn
non-polymer
18.015
water
78
nat
water
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
Gallus
sample
EGG
EGG WHITE
9031
Gallus gallus
1
2.03
39.40
VAPOR DIFFUSION, HANGING DROP
5.5
Sodium chloride , pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 290.0K
290.0
repository
Initial release
Version format compliance
Version format compliance
1
0
1999-07-06
1
1
2008-04-27
1
2
2011-07-13
Lysozyme (E.C. 3.2.1.17) (295 K)
RCSB
Y
RCSB
1999-06-28
REL
NA
SODIUM ION
CL
CHLORIDE ION
KR
KRYPTON
HOH
water
NA
140
2
NA
NA
140
A
CL
160
3
CL
CL
160
A
CL
161
3
CL
CL
161
A
CL
162
3
CL
CL
162
A
CL
163
3
CL
CL
163
A
KR
150
4
KR
KR
150
A
HOH
200
5
HOH
HOH
200
A
HOH
201
5
HOH
HOH
201
A
HOH
202
5
HOH
HOH
202
A
HOH
203
5
HOH
HOH
203
A
HOH
204
5
HOH
HOH
204
A
HOH
205
5
HOH
HOH
205
A
HOH
206
5
HOH
HOH
206
A
HOH
207
5
HOH
HOH
207
A
HOH
208
5
HOH
HOH
208
A
HOH
209
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
211
5
HOH
HOH
211
A
HOH
212
5
HOH
HOH
212
A
HOH
213
5
HOH
HOH
213
A
HOH
214
5
HOH
HOH
214
A
HOH
215
5
HOH
HOH
215
A
HOH
216
5
HOH
HOH
216
A
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
220
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
263
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
author_defined_assembly
1
monomeric
A
SER
60
A
O
SER
60
1_555
A
NA
140
B
NA
NA
1_555
A
CYS
64
A
O
CYS
64
1_555
84.7
A
SER
60
A
O
SER
60
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
202
H
O
HOH
1_555
93.5
A
CYS
64
A
O
CYS
64
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
202
H
O
HOH
1_555
78.5
A
SER
60
A
O
SER
60
1_555
A
NA
140
B
NA
NA
1_555
A
SER
72
A
OG
SER
72
1_555
102.8
A
CYS
64
A
O
CYS
64
1_555
A
NA
140
B
NA
NA
1_555
A
SER
72
A
OG
SER
72
1_555
152.4
A
HOH
202
H
O
HOH
1_555
A
NA
140
B
NA
NA
1_555
A
SER
72
A
OG
SER
72
1_555
74.6
A
SER
60
A
O
SER
60
1_555
A
NA
140
B
NA
NA
1_555
A
ARG
73
A
O
ARG
73
1_555
97.8
A
CYS
64
A
O
CYS
64
1_555
A
NA
140
B
NA
NA
1_555
A
ARG
73
A
O
ARG
73
1_555
94.5
A
HOH
202
H
O
HOH
1_555
A
NA
140
B
NA
NA
1_555
A
ARG
73
A
O
ARG
73
1_555
166.1
A
SER
72
A
OG
SER
72
1_555
A
NA
140
B
NA
NA
1_555
A
ARG
73
A
O
ARG
73
1_555
110.4
A
SER
60
A
O
SER
60
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
171.7
A
CYS
64
A
O
CYS
64
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
95.6
A
HOH
202
H
O
HOH
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
78.5
A
SER
72
A
OG
SER
72
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
73.2
A
ARG
73
A
O
ARG
73
1_555
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
90.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
44
A
O
ASN
44
A
N
ASP
52
A
N
ASP
52
A
O
TYR
53
A
O
TYR
53
A
N
ILE
58
A
N
ILE
58
1
A
HOH
254
H
HOH
1
A
HOH
259
H
HOH
1
A
ARG
68
-140.78
20.81
Used weighted full matrix least squares procedure
0.216
0.1729
0.1698
2.03
9.9
710
8010
7734
76.9
RANDOM
1
3.0
3.0
Engh & Huber
2.03
9.9
78
1085
6
0
1001
0.006
0.023
18.6
2.03
9.9
1QTK
8010
7734
3.0
3.0
0.057
1
9.3
4.8
80.0
0.141
2.03
2.15
554
2.5
63.0
data reduction
MOSFLM
data scaling
SCALA
refinement
SHELXL-97
data scaling
CCP4
(SCALA)
LYSOZYME (E.C. 3.2.1.17)
CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF KRYPTON (55 BAR)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
GLY
4
A
GLY
4
HELX_P
A
HIS
15
A
HIS
15
1
1
12
A
SER
24
A
SER
24
HELX_P
A
ASN
37
A
ASN
37
1
2
14
A
CYS
80
A
CYS
80
HELX_P
A
SER
85
A
SER
85
5
3
6
A
ILE
88
A
ILE
88
HELX_P
A
ASP
101
A
ASP
101
1
4
14
A
ASN
103
A
ASN
103
HELX_P
A
ALA
107
A
ALA
107
5
5
5
A
TRP
108
A
TRP
108
HELX_P
A
CYS
115
A
CYS
115
1
6
8
A
ASP
119
A
ASP
119
HELX_P
A
ILE
124
A
ILE
124
5
7
6
disulf
2.024
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.026
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.041
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.036
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
metalc
2.271
A
NA
140
B
NA
NA
1_555
A
SER
60
A
O
SER
60
1_555
metalc
2.594
A
NA
140
B
NA
NA
1_555
A
CYS
64
A
O
CYS
64
1_555
metalc
2.475
A
NA
140
B
NA
NA
1_555
A
HOH
202
H
O
HOH
1_555
metalc
2.225
A
NA
140
B
NA
NA
1_555
A
SER
72
A
OG
SER
72
1_555
metalc
2.651
A
ARG
73
A
O
ARG
73
1_555
A
NA
140
B
NA
NA
1_555
metalc
2.648
A
NA
140
B
NA
NA
1_555
A
HOH
222
H
O
HOH
1_555
HYDROLASE
HYDROPHOBIC CAVITY, KRYPTON COMPLEX, HYDROLASE
LYSC_CHICK
UNP
1
P00698
19
147
1QTK
1
129
P00698
A
1
1
129
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
A
ILE
58
A
ILE
58
A
ASN
59
A
ASN
59
BINDING SITE FOR RESIDUE NA A 140
Software
6
BINDING SITE FOR RESIDUE CL A 160
Software
2
BINDING SITE FOR RESIDUE CL A 161
Software
4
BINDING SITE FOR RESIDUE CL A 162
Software
4
BINDING SITE FOR RESIDUE CL A 163
Software
2
BINDING SITE FOR RESIDUE KR A 150
Software
3
A
SER
60
A
SER
60
6
1_555
A
CYS
64
A
CYS
64
6
1_555
A
SER
72
A
SER
72
6
1_555
A
ARG
73
A
ARG
73
6
1_555
A
HOH
202
H
HOH
6
1_555
A
HOH
222
H
HOH
6
1_555
A
TYR
23
A
TYR
23
2
1_555
A
ASN
113
A
ASN
113
2
4_455
A
SER
24
A
SER
24
4
1_555
A
GLY
26
A
GLY
26
4
1_555
A
GLN
121
A
GLN
121
4
1_555
A
ILE
124
A
ILE
124
4
1_555
A
ASN
65
A
ASN
65
4
1_555
A
THR
69
A
THR
69
4
1_555
A
SER
72
A
SER
72
4
1_555
A
HOH
202
H
HOH
4
1_555
A
ASP
87
A
ASP
87
2
1_555
A
ILE
88
A
ILE
88
2
1_555
A
ILE
55
A
ILE
55
3
1_555
A
LEU
56
A
LEU
56
3
1_555
A
VAL
92
A
VAL
92
3
1_555
96
P 43 21 2