1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schaerpf, M.
Sticht, H.
Roesch, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
R
C
N
157
N
O
N
158
R
C
Y
159
N
N
Y
160
N
C
Y
161
N
N
Y
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
C
N
167
N
N
N
168
N
N
Y
169
N
C
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
O
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
R
C
N
316
N
O
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
N
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
O
N
356
N
P
N
357
N
O
N
358
N
O
N
359
N
O
N
360
N
C
N
361
R
C
N
362
N
O
N
363
S
C
N
364
N
O
N
365
R
C
N
366
N
O
N
367
R
C
N
368
N
N
N
369
N
C
N
370
N
O
N
371
N
N
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
sing
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
doub
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
267
2397
2408
10.1046/j.1432-1327.2000.01251.x
10759866
Antitermination in bacteriophage lambda. The structure of the N36 peptide-boxB RNA complex
2000
10.2210/pdb1qfq/pdb
pdb_00001qfq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
NUTBOXB FROM THE NUTR-SEQUENCE
4853.994
15-mer nutRboxB RNA hairpin
BACTERIOPHAGE LAMBDA NUT boxB-RNA
1
syn
polymer
4007.587
36-mer N-terminal peptide of the N protein
N-TERMINAL BINDING-DOMAIN, RESIDUES 2-36
1
man
polymer
N36
no
no
GCCCUGAAAAAGGGC
GCCCUGAAAAAGGGC
A
polyribonucleotide
no
no
DAQTRRRERRAEKQAQWKAANPLLVGVSAKPVNRP
DAQTRRRERRAEKQAQWKAANPLLVGVSAKPVNRP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lambda-like viruses
Escherichia
sample
10710
Enterobacteria phage lambda
562
Escherichia coli
-0.023
1
19
A
1
A
15
-3.149
A_G1:C15_A
1
0.085
0.071
-0.006
-0.103
0.004
1
19
A
2
A
14
-1.159
A_C2:G14_A
2
0.023
0.164
-0.001
-0.095
0.035
1
19
A
3
A
13
-1.488
A_C3:G13_A
3
-0.016
0.132
-0.005
-0.091
-0.088
1
19
A
4
A
12
-1.264
A_C4:G12_A
4
-0.046
0.098
-0.004
-0.110
0.287
1
20
A
5
A
11
1.751
A_U5:A11_A
5
-0.042
0.136
-0.017
-0.134
24.319
A
6
A
10
-24.152
A_G6:A10_A
6
30.864
6.017
1.461
-6.258
2.257
35.723
A
A
1
2
24.077
A
A
15
14
3.329
14.343
-0.029
-1.998
AA_G1C2:G14C15_AA
1
4.224
-7.091
32.537
-5.117
0.595
3.728
23.358
A
A
2
3
-6.024
A
A
14
13
3.550
-2.434
1.133
-1.596
AA_C2C3:G13G14_AA
2
0.717
-1.774
23.222
-3.017
-2.526
2.644
38.679
A
A
3
4
12.723
A
A
13
12
3.064
8.365
0.159
-1.681
AA_C3C4:G12G13_AA
3
-0.591
0.899
37.793
-3.445
-0.304
1.588
20.533
A
A
4
5
26.980
A
A
12
11
2.763
9.273
-0.866
-2.046
AA_C4U5:A11G12_AA
4
-0.858
2.495
18.320
-8.626
2.162
2.589
63.308
A
A
5
6
8.413
A
A
11
10
2.617
8.786
-1.865
-1.696
AA_U5G6:A10A11_AA
5
-8.413
8.056
62.248
-1.928
1.478
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
1999-04-20
1
1
2007-10-21
1
2
2011-07-13
1
3
2022-03-02
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
PDBE
Y
RCSB
1999-04-12
REL
REL
SEQUENCE FROM BACTERIOPHAGE LAMBDA. RNA WAS UNIFORMLY LABELLED WITH (13)C AND (15)N
sample
LOWEST ENERGY, AGREEMENT WITH EXPERIMENTAL DATA
100
29
(1)H-(31)P-COSY
(1)H-(13)C-CT- HSQC
(1)H-(15)N-HSQC
(1)H-(1)H-COSY
(1)H-(1)H-TOCSY
(1)H-(1)H-NOESY WITH 75 AND 150 MS MIXING TIME
'(13)C-ED.-NOESY
(1)H-(15)N-(1)H-NOESY-HSQC
(1)H-(15)N-(1)H-TOCSY-HSQC
HNHA
(13)C-NOESY-HSQC
HCCH-TOCSY
HCCH-COSY
CCH-COSY
0 mM
6.5
1.0
atm
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
molecular dynamics
1
10% H2O/90% D2O
BRUNGER
refinement
X-PLOR
3.851
structure solution
NDEE
structure solution
Xndee
structure solution
X-PLOR
600
Bruker
DRX
750
Bruker
DMX
G
1
n
1
G
1
A
C
2
n
2
C
2
A
C
3
n
3
C
3
A
C
4
n
4
C
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
A
7
n
7
A
7
A
A
8
n
8
A
8
A
A
9
n
9
A
9
A
A
10
n
10
A
10
A
A
11
n
11
A
11
A
G
12
n
12
G
12
A
G
13
n
13
G
13
A
G
14
n
14
G
14
A
C
15
n
15
C
15
A
ASP
2
n
1
ASP
2
B
ALA
3
n
2
ALA
3
B
GLN
4
n
3
GLN
4
B
THR
5
n
4
THR
5
B
ARG
6
n
5
ARG
6
B
ARG
7
n
6
ARG
7
B
ARG
8
n
7
ARG
8
B
GLU
9
n
8
GLU
9
B
ARG
10
n
9
ARG
10
B
ARG
11
n
10
ARG
11
B
ALA
12
n
11
ALA
12
B
GLU
13
n
12
GLU
13
B
LYS
14
n
13
LYS
14
B
GLN
15
n
14
GLN
15
B
ALA
16
n
15
ALA
16
B
GLN
17
n
16
GLN
17
B
TRP
18
n
17
TRP
18
B
LYS
19
n
18
LYS
19
B
ALA
20
n
19
ALA
20
B
ALA
21
n
20
ALA
21
B
ASN
22
n
21
ASN
22
B
PRO
23
n
22
PRO
23
B
LEU
24
n
23
LEU
24
B
LEU
25
n
24
LEU
25
B
VAL
26
n
25
VAL
26
B
GLY
27
n
26
GLY
27
B
VAL
28
n
27
VAL
28
B
SER
29
n
28
SER
29
B
ALA
30
n
29
ALA
30
B
LYS
31
n
30
LYS
31
B
PRO
32
n
31
PRO
32
B
VAL
33
n
32
VAL
33
B
ASN
34
n
33
ASN
34
B
ARG
35
n
34
ARG
35
B
PRO
36
n
35
PRO
36
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
B
O
H
GLN
LYS
15
19
1.50
1
B
B
O
H
ARG
GLN
11
15
1.51
2
B
B
O
H
GLN
LYS
15
19
1.48
2
B
B
O
H
ARG
GLN
11
15
1.51
3
B
B
O
H
GLN
LYS
15
19
1.49
3
B
B
O
H
ARG
GLN
11
15
1.50
4
B
B
O
H
GLN
LYS
15
19
1.47
4
B
B
O
H
ARG
GLN
11
15
1.52
5
B
B
O
H
GLN
LYS
15
19
1.45
5
B
B
O
H
ARG
GLN
11
15
1.52
6
B
B
O
H
GLN
LYS
15
19
1.51
6
B
B
O
H
ARG
GLN
11
15
1.52
7
B
B
O
H
GLN
LYS
15
19
1.46
7
B
B
O
H
ARG
GLN
11
15
1.52
8
B
B
O
H
GLN
LYS
15
19
1.47
8
B
B
O
H
ARG
GLN
11
15
1.52
9
A
A
HO2'
O5'
G
G
13
14
1.46
9
B
B
O
H
GLN
LYS
15
19
1.48
9
B
B
O
H
ARG
GLN
11
15
1.51
10
B
B
O
H
GLN
LYS
15
19
1.46
10
B
B
O
H
ARG
GLN
11
15
1.53
11
B
B
O
H
GLN
LYS
15
19
1.52
11
B
B
O
H
ARG
GLN
11
15
1.53
12
B
B
O
H
VAL
VAL
26
28
1.42
12
B
B
O
H
GLN
LYS
15
19
1.47
12
B
B
O
H
ARG
GLN
11
15
1.52
12
B
B
O
O
PRO
VAL
23
26
2.03
12
B
B
O
N
VAL
VAL
26
28
2.17
13
B
B
O
H
GLN
LYS
15
19
1.50
13
B
B
O
H
ARG
GLN
11
15
1.53
14
B
B
O
H
GLN
LYS
15
19
1.46
14
B
B
O
H
ARG
GLN
11
15
1.53
14
B
B
O
H
VAL
VAL
26
28
1.59
15
A
A
H22
H8
G
A
6
10
1.28
15
B
B
O
H
GLN
LYS
15
19
1.50
15
B
B
O
H
ARG
GLN
11
15
1.52
16
B
B
O
H
GLN
LYS
15
19
1.49
16
B
B
O
H
ARG
GLN
11
15
1.54
17
A
A
HO2'
O5'
G
G
13
14
1.48
17
B
B
O
H
GLN
LYS
15
19
1.50
17
B
B
O
H
ARG
GLN
11
15
1.53
18
B
B
O
H
GLN
LYS
15
19
1.48
18
B
B
O
H
ARG
GLN
11
15
1.52
19
B
B
O
H
GLN
LYS
15
19
1.47
19
B
B
O
H
ARG
GLN
11
15
1.53
20
B
B
O
H
GLN
LYS
15
19
1.47
20
B
B
O
H
ARG
GLN
11
15
1.53
21
B
B
O
H
GLN
LYS
15
19
1.51
21
A
A
HO2'
O5'
C
C
2
3
1.53
21
B
B
O
H
ARG
GLN
11
15
1.58
22
B
B
O
H
GLN
LYS
15
19
1.49
22
B
B
O
H
ARG
GLN
11
15
1.52
22
A
A
HO2'
O5'
C
C
3
4
1.58
22
B
B
O
H
ALA
ALA
12
16
1.60
23
B
B
O
H
GLN
LYS
15
19
1.49
23
B
B
O
H
ARG
GLN
11
15
1.51
24
B
B
O
H
GLN
LYS
15
19
1.50
24
B
B
O
H
ARG
GLN
11
15
1.53
25
B
B
O
H
GLN
LYS
15
19
1.49
25
B
B
O
H
ARG
GLN
11
15
1.53
26
B
B
O
H
GLN
LYS
15
19
1.49
26
B
B
O
H
ARG
GLN
11
15
1.52
27
B
B
O
H
GLN
LYS
15
19
1.46
27
B
B
O
H
ARG
GLN
11
15
1.52
28
B
B
O
H
GLN
LYS
15
19
1.40
28
B
B
O
H
ARG
GLN
11
15
1.55
29
B
B
O
H
GLN
LYS
15
19
1.47
29
B
B
O
H
ARG
GLN
11
15
1.51
1
B
ASN
22
-153.46
49.83
1
B
ARG
35
-153.10
70.69
2
B
ASN
22
-155.23
50.63
2
B
LEU
25
-99.71
33.82
2
B
SER
29
52.01
-172.29
3
B
ALA
3
-164.92
-41.38
3
B
ASN
22
-154.37
51.58
3
B
ASN
34
-113.65
54.60
4
B
ALA
3
-148.33
-39.75
4
B
ASN
22
-154.96
50.72
4
B
VAL
28
-49.56
172.87
4
B
SER
29
-55.44
79.79
4
B
ALA
30
-175.40
42.00
4
B
ARG
35
-152.44
54.63
5
B
ALA
3
-161.70
-39.64
5
B
ASN
22
-155.08
50.29
5
B
LEU
25
-97.22
35.12
5
B
LYS
31
-162.83
94.34
6
B
ALA
3
-145.59
-39.54
6
B
ASN
22
-154.28
51.91
6
B
LEU
25
-99.39
31.73
6
B
SER
29
52.06
-167.84
6
B
ALA
30
51.44
78.31
6
B
ARG
35
-51.08
108.45
7
B
ASN
22
-155.40
52.42
7
B
VAL
28
-49.88
170.35
7
B
SER
29
-84.03
42.83
7
B
ALA
30
26.12
50.17
7
B
PRO
32
-75.51
-168.32
8
B
ASN
22
-155.35
52.40
8
B
VAL
28
-49.68
171.19
8
B
SER
29
-74.13
49.49
8
B
ALA
30
28.89
65.52
8
B
VAL
33
-142.33
-93.24
9
B
ASN
22
-154.10
52.40
9
B
VAL
28
50.93
171.51
9
B
ASN
34
55.71
178.63
9
B
ARG
35
47.82
-173.84
10
B
ASN
22
-155.08
51.31
10
B
VAL
28
36.00
-154.25
10
B
SER
29
-92.71
46.37
11
B
ALA
3
-135.52
-40.00
11
B
ASN
22
-155.14
50.00
11
B
SER
29
51.97
-161.36
11
B
LYS
31
-159.04
77.08
11
B
ASN
34
-67.41
80.42
12
B
ASN
22
-156.23
52.76
12
B
LEU
25
-96.93
35.22
12
B
VAL
28
-35.83
157.36
12
B
ALA
30
12.91
69.39
12
B
ASN
34
-101.04
56.16
13
B
ALA
3
-153.74
-42.15
13
B
ASN
22
-153.63
51.22
13
B
VAL
28
-91.78
-157.57
13
B
ALA
30
-152.75
48.42
13
B
VAL
33
-107.28
67.49
13
B
ASN
34
50.32
71.27
13
B
ARG
35
-179.53
-57.56
14
B
ASN
22
-155.59
51.20
14
B
ALA
30
-152.71
39.29
14
B
LYS
31
-174.73
134.26
14
B
ARG
35
53.69
83.26
15
B
ASN
22
-154.74
51.31
15
B
LEU
25
-98.03
34.14
15
B
ALA
30
37.36
58.63
15
B
ASN
34
-99.75
43.11
15
B
ARG
35
49.35
77.31
16
B
ASN
22
-153.76
50.61
16
B
LEU
25
-99.88
34.02
16
B
VAL
28
37.98
-157.63
16
B
SER
29
-69.76
61.81
16
B
ALA
30
-151.07
49.08
16
B
VAL
33
55.69
101.49
16
B
ARG
35
-178.58
-58.31
17
B
ASN
22
-152.87
49.68
17
B
LEU
25
-99.16
35.75
17
B
VAL
28
54.97
135.13
17
B
SER
29
35.95
35.75
17
B
ALA
30
35.03
68.09
17
B
VAL
33
-140.64
-39.16
17
B
ARG
35
-171.04
96.60
18
B
ASN
22
-155.02
51.86
18
B
SER
29
50.28
-170.79
18
B
ALA
30
51.04
74.08
19
B
ALA
3
-140.81
-34.84
19
B
ASN
22
-154.75
50.24
19
B
SER
29
52.35
-175.63
19
B
ASN
34
-108.10
55.32
20
B
ALA
3
-176.54
-33.95
20
B
ASN
22
-155.36
50.93
20
B
LEU
25
-99.58
30.70
20
B
SER
29
49.58
-170.03
20
B
ASN
34
-147.92
53.85
21
B
ASN
22
-153.58
50.36
21
B
LEU
25
-98.53
33.61
21
B
VAL
28
50.90
-143.78
21
B
ALA
30
44.32
74.35
21
B
PRO
32
-76.89
-167.89
21
B
VAL
33
-98.60
-158.97
22
B
ASN
22
-154.25
50.12
22
B
LEU
25
-97.55
30.62
22
B
VAL
28
33.99
40.49
22
B
SER
29
-141.00
-157.66
22
B
ARG
35
-176.66
-58.37
23
B
ASN
22
-154.55
50.86
23
B
LEU
25
-98.35
34.33
23
B
VAL
28
-39.19
142.54
23
B
ALA
30
28.93
89.13
23
B
VAL
33
-173.44
-31.63
23
B
ASN
34
-69.73
66.33
24
B
ASN
22
-154.59
50.15
24
B
SER
29
47.88
-160.28
24
B
ALA
30
-11.90
82.56
25
B
ASN
22
-153.74
48.47
25
B
LEU
25
-97.08
37.01
25
B
SER
29
54.82
-161.57
25
B
LYS
31
-179.82
62.97
25
B
VAL
33
-174.72
35.22
25
B
ASN
34
-105.12
54.65
25
B
ARG
35
-162.32
59.88
26
B
ALA
3
-160.16
-40.98
26
B
ASN
22
-155.16
52.91
26
B
ALA
30
-141.04
44.63
27
B
ASN
22
-155.67
52.66
27
B
LYS
31
-167.32
60.35
27
B
VAL
33
58.30
124.44
27
B
ASN
34
-53.18
103.37
27
B
ARG
35
-172.01
-59.57
28
B
ASN
22
-155.27
51.40
28
B
ALA
30
-146.81
50.52
28
B
PRO
32
-72.56
-165.87
29
B
ASN
22
-153.69
47.86
29
B
VAL
28
-51.54
174.66
29
B
ALA
30
29.15
58.63
Bacteriophage Lambda N-protein-NutboxB-RNA Complex
1
N
N
2
N
N
B
GLN
4
B
GLN
3
HELX_P
B
ALA
21
B
ALA
20
1
1
18
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
15
A
N3
C
15
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
15
A
O2
C
15
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
15
A
N4
C
15
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
14
A
N1
G
14
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
14
A
O6
G
14
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
14
A
N2
G
14
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
13
A
N1
G
13
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
13
A
O6
G
13
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
13
A
N2
G
13
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
G
12
A
N1
G
12
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
G
12
A
O6
G
12
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
G
12
A
N2
G
12
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
11
A
N6
A
11
1_555
hydrog
G-A MISPAIR
A
G
6
A
N2
G
6
1_555
A
A
10
A
N7
A
10
1_555
TRANSCRIPTION/RNA
BACTERIOPHAGE LAMBDA; ANTITERMINATION; PEPTIDE-RNA-COMPLEX; N-NUT; GNRA TETRALOOP; BENT-ALPHA-HELIX; PEPTIDE-RNA-RECOGNITION, TRANSCRIPTION-RNA COMPLEX
REGN_LAMBD
UNP
2
2
P03045
1QFQ
PDB
1
1QFQ
2
36
1QFQ
2
36
P03045
B
1
1
35
1
15
1QFQ
1
15
1QFQ
A
2
1
15
1
P 1