0.016175
0.000000
0.000000
0.000000
0.014395
0.000000
0.000000
0.000000
0.024473
0.00000
0.00000
0.00000
Amor, J.-C.
Horton, J.R.
Zhu, X.
Wang, Y.
Sullards, C.
Ringe, D.
Cheng, X.
Kahn, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
61.822
69.470
40.861
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C2 H6 O
46.068
ETHANOL
non-polymer
C10 H16 N5 O14 P3
523.180
GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C3 H8 O2
76.094
1,3-PROPANDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
P
N
108
N
O
N
109
N
O
N
110
N
O
N
111
S
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
C
N
132
N
N
N
133
N
N
Y
134
N
C
N
135
N
P
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
Y
223
N
C
Y
224
N
N
Y
225
N
C
Y
226
N
C
Y
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
S
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
N
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
S
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
MG
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
R
C
N
404
N
O
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
N
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
N
454
N
O
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
N
134
N
sing
Y
135
N
doub
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
doub
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
42477
42484
10.1074/jbc.M106660200
11535602
Structures of yeast ARF2 and ARL1: distinct roles for the N terminus in the structure and function of ARF family GTPases.
2001
10.2210/pdb1mr3/pdb
pdb_00001mr3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
80
1
AREA DETECTOR
1996-07-15
MARRESEARCH
Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.00805
1.0
X12C
NSLS
1.00805
SYNCHROTRON
NSLS BEAMLINE X12C
20680.566
ADP-ribosylation factor 2
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
523.180
GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
10
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
46.068
ETHANOL
4
syn
non-polymer
76.094
1,3-PROPANDIOL
2
syn
non-polymer
18.015
water
207
nat
water
no
no
MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH
YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCA
TSGEGLYEGLEWLSNNLKNQS
MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH
YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCA
TSGEGLYEGLEWLSNNLKNQS
F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
ARF2
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET3c
1
2.12
42.01
VAPOR DIFFUSION, HANGING DROP
6.5
30% PEG 8k, 100mM Cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-11-20
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Homo Sapiens ADP-ribosylation Factor 1 complexed with GDP at 2.0A resolution
RCSB
Y
RCSB
2002-09-17
REL
MG
MAGNESIUM ION
G3D
GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE
EDO
1,2-ETHANEDIOL
GOL
GLYCEROL
EOH
ETHANOL
PDO
1,3-PROPANDIOL
HOH
water
1HUR
PDB entry 1hur
PDB
experimental model
MG
801
2
MG
MG
801
F
GDP
800
3
G3D
G3D
800
F
ETH
1065
4
EDO
EDO
2065
F
ETH
1067
4
EDO
EDO
2067
F
ETH
1069
4
EDO
EDO
2069
F
ETH
1071
4
EDO
EDO
2071
F
ETH
1072
4
EDO
EDO
2072
F
ETH
1073
4
EDO
EDO
2073
F
ETH
1074
4
EDO
EDO
2074
F
ETH
1075
4
EDO
EDO
2075
F
ETH
1076
4
EDO
EDO
2076
F
ETH
1077
4
EDO
EDO
2077
F
CRY
950
5
GOL
GOL
950
F
CRY
954
5
GOL
GOL
954
F
EOH
1046
6
EOH
EOH
2046
F
EOH
1047
6
EOH
EOH
2047
F
EOH
1048
6
EOH
EOH
2048
F
EOH
1049
6
EOH
EOH
2049
F
PDO
2008
7
PDO
PDO
2008
F
PDO
2009
7
PDO
PDO
2009
F
TIP
501
8
HOH
HOH
2078
F
TIP
502
8
HOH
HOH
2079
F
TIP
503
8
HOH
HOH
2080
F
TIP
504
8
HOH
HOH
2081
F
TIP
505
8
HOH
HOH
2082
F
TIP
507
8
HOH
HOH
2083
F
TIP
508
8
HOH
HOH
2084
F
TIP
509
8
HOH
HOH
2085
F
TIP
510
8
HOH
HOH
2086
F
TIP
511
8
HOH
HOH
2087
F
TIP
512
8
HOH
HOH
2088
F
TIP
513
8
HOH
HOH
2089
F
TIP
515
8
HOH
HOH
2090
F
TIP
516
8
HOH
HOH
2091
F
TIP
517
8
HOH
HOH
2092
F
TIP
518
8
HOH
HOH
2093
F
TIP
519
8
HOH
HOH
2094
F
TIP
520
8
HOH
HOH
2095
F
TIP
521
8
HOH
HOH
2096
F
TIP
522
8
HOH
HOH
2097
F
TIP
523
8
HOH
HOH
2098
F
TIP
524
8
HOH
HOH
2099
F
TIP
525
8
HOH
HOH
2100
F
TIP
526
8
HOH
HOH
2101
F
TIP
527
8
HOH
HOH
2102
F
TIP
528
8
HOH
HOH
2103
F
TIP
529
8
HOH
HOH
2104
F
TIP
530
8
HOH
HOH
2105
F
TIP
531
8
HOH
HOH
2106
F
TIP
532
8
HOH
HOH
2107
F
TIP
533
8
HOH
HOH
2108
F
TIP
534
8
HOH
HOH
2109
F
TIP
535
8
HOH
HOH
2110
F
TIP
536
8
HOH
HOH
2111
F
TIP
537
8
HOH
HOH
2112
F
TIP
538
8
HOH
HOH
2113
F
TIP
539
8
HOH
HOH
2114
F
TIP
540
8
HOH
HOH
2115
F
TIP
541
8
HOH
HOH
2116
F
TIP
542
8
HOH
HOH
2117
F
TIP
543
8
HOH
HOH
2118
F
TIP
544
8
HOH
HOH
2119
F
TIP
545
8
HOH
HOH
2120
F
TIP
546
8
HOH
HOH
2121
F
TIP
547
8
HOH
HOH
2122
F
TIP
548
8
HOH
HOH
2123
F
TIP
549
8
HOH
HOH
2124
F
TIP
550
8
HOH
HOH
2125
F
TIP
551
8
HOH
HOH
2126
F
TIP
552
8
HOH
HOH
2127
F
TIP
553
8
HOH
HOH
2128
F
TIP
554
8
HOH
HOH
2129
F
TIP
555
8
HOH
HOH
2130
F
TIP
556
8
HOH
HOH
2131
F
TIP
557
8
HOH
HOH
2132
F
TIP
558
8
HOH
HOH
2133
F
TIP
559
8
HOH
HOH
2134
F
TIP
560
8
HOH
HOH
2135
F
TIP
561
8
HOH
HOH
2136
F
TIP
562
8
HOH
HOH
2137
F
TIP
563
8
HOH
HOH
2138
F
TIP
564
8
HOH
HOH
2139
F
TIP
565
8
HOH
HOH
2140
F
TIP
566
8
HOH
HOH
2141
F
TIP
567
8
HOH
HOH
2142
F
TIP
568
8
HOH
HOH
2143
F
TIP
569
8
HOH
HOH
2144
F
TIP
570
8
HOH
HOH
2145
F
TIP
571
8
HOH
HOH
2146
F
TIP
572
8
HOH
HOH
2147
F
TIP
573
8
HOH
HOH
2148
F
TIP
574
8
HOH
HOH
2149
F
TIP
575
8
HOH
HOH
2150
F
TIP
576
8
HOH
HOH
2151
F
TIP
577
8
HOH
HOH
2152
F
TIP
578
8
HOH
HOH
2153
F
TIP
579
8
HOH
HOH
2154
F
TIP
580
8
HOH
HOH
2155
F
TIP
581
8
HOH
HOH
2156
F
TIP
582
8
HOH
HOH
2157
F
TIP
583
8
HOH
HOH
2158
F
TIP
584
8
HOH
HOH
2159
F
TIP
585
8
HOH
HOH
2160
F
TIP
586
8
HOH
HOH
2161
F
TIP
587
8
HOH
HOH
2162
F
TIP
588
8
HOH
HOH
2163
F
TIP
589
8
HOH
HOH
2164
F
TIP
590
8
HOH
HOH
2165
F
TIP
591
8
HOH
HOH
2166
F
TIP
594
8
HOH
HOH
2167
F
TIP
595
8
HOH
HOH
2168
F
TIP
596
8
HOH
HOH
2169
F
TIP
597
8
HOH
HOH
2170
F
TIP
599
8
HOH
HOH
2171
F
TIP
602
8
HOH
HOH
2172
F
TIP
603
8
HOH
HOH
2173
F
TIP
604
8
HOH
HOH
2174
F
TIP
605
8
HOH
HOH
2175
F
TIP
606
8
HOH
HOH
2176
F
TIP
607
8
HOH
HOH
2177
F
TIP
608
8
HOH
HOH
2178
F
TIP
610
8
HOH
HOH
2179
F
TIP
611
8
HOH
HOH
2180
F
TIP
612
8
HOH
HOH
2181
F
TIP
613
8
HOH
HOH
2182
F
TIP
614
8
HOH
HOH
2183
F
TIP
617
8
HOH
HOH
2184
F
TIP
619
8
HOH
HOH
2185
F
TIP
623
8
HOH
HOH
2186
F
TIP
625
8
HOH
HOH
2187
F
TIP
629
8
HOH
HOH
2188
F
TIP
631
8
HOH
HOH
2189
F
TIP
632
8
HOH
HOH
2190
F
TIP
633
8
HOH
HOH
2191
F
TIP
634
8
HOH
HOH
2192
F
TIP
635
8
HOH
HOH
2193
F
TIP
636
8
HOH
HOH
2194
F
TIP
637
8
HOH
HOH
2195
F
TIP
640
8
HOH
HOH
2196
F
TIP
646
8
HOH
HOH
2197
F
TIP
647
8
HOH
HOH
2198
F
TIP
651
8
HOH
HOH
2199
F
TIP
652
8
HOH
HOH
2200
F
TIP
653
8
HOH
HOH
2201
F
TIP
654
8
HOH
HOH
2202
F
TIP
1
8
HOH
HOH
2203
F
TIP
2
8
HOH
HOH
2204
F
TIP
3
8
HOH
HOH
2205
F
TIP
21
8
HOH
HOH
2206
F
TIP
816
8
HOH
HOH
2207
F
TIP
820
8
HOH
HOH
2208
F
TIP
837
8
HOH
HOH
2209
F
TIP
846
8
HOH
HOH
2210
F
TIP
847
8
HOH
HOH
2211
F
TIP
882
8
HOH
HOH
2212
F
TIP
884
8
HOH
HOH
2213
F
TIP
899
8
HOH
HOH
2214
F
TIP
901
8
HOH
HOH
2215
F
TIP
924
8
HOH
HOH
2216
F
TIP
940
8
HOH
HOH
2217
F
TIP
946
8
HOH
HOH
2218
F
TIP
949
8
HOH
HOH
2219
F
TIP
986
8
HOH
HOH
2220
F
TIP
987
8
HOH
HOH
2221
F
TIP
988
8
HOH
HOH
2222
F
TIP
990
8
HOH
HOH
2223
F
TIP
994
8
HOH
HOH
2224
F
TIP
995
8
HOH
HOH
2225
F
TIP
996
8
HOH
HOH
2226
F
TIP
999
8
HOH
HOH
2227
F
TIP
1001
8
HOH
HOH
2228
F
TIP
1004
8
HOH
HOH
2229
F
TIP
1005
8
HOH
HOH
2230
F
TIP
1009
8
HOH
HOH
2231
F
TIP
1012
8
HOH
HOH
2232
F
TIP
1015
8
HOH
HOH
2233
F
TIP
1031
8
HOH
HOH
2234
F
TIP
1032
8
HOH
HOH
2235
F
TIP
1033
8
HOH
HOH
2236
F
TIP
1034
8
HOH
HOH
2237
F
TIP
1035
8
HOH
HOH
2238
F
TIP
1036
8
HOH
HOH
2239
F
TIP
1037
8
HOH
HOH
2240
F
TIP
1038
8
HOH
HOH
2241
F
TIP
1039
8
HOH
HOH
2242
F
TIP
1040
8
HOH
HOH
2243
F
TIP
1041
8
HOH
HOH
2244
F
TIP
1042
8
HOH
HOH
2245
F
TIP
1043
8
HOH
HOH
2246
F
TIP
1044
8
HOH
HOH
2247
F
TIP
1045
8
HOH
HOH
2248
F
TIP
1046
8
HOH
HOH
2249
F
TIP
1047
8
HOH
HOH
2250
F
TIP
1048
8
HOH
HOH
2251
F
TIP
1049
8
HOH
HOH
2252
F
TIP
1050
8
HOH
HOH
2253
F
TIP
1051
8
HOH
HOH
2254
F
TIP
1052
8
HOH
HOH
2255
F
TIP
1053
8
HOH
HOH
2256
F
TIP
1054
8
HOH
HOH
2257
F
TIP
1055
8
HOH
HOH
2258
F
TIP
1056
8
HOH
HOH
2259
F
TIP
1057
8
HOH
HOH
2260
F
TIP
1058
8
HOH
HOH
2261
F
TIP
1059
8
HOH
HOH
2262
F
TIP
1060
8
HOH
HOH
2263
F
TIP
1061
8
HOH
HOH
2264
F
TIP
1062
8
HOH
HOH
2265
F
TIP
1063
8
HOH
HOH
2266
F
TIP
1064
8
HOH
HOH
2267
F
TIP
1065
8
HOH
HOH
2268
F
TIP
1066
8
HOH
HOH
2269
F
TIP
1067
8
HOH
HOH
2270
F
TIP
1068
8
HOH
HOH
2271
F
TIP
1069
8
HOH
HOH
2272
F
TIP
1070
8
HOH
HOH
2273
F
TIP
1071
8
HOH
HOH
2274
F
TIP
1072
8
HOH
HOH
2275
F
TIP
1073
8
HOH
HOH
2276
F
TIP
1074
8
HOH
HOH
2277
F
TIP
1075
8
HOH
HOH
2278
F
TIP
1076
8
HOH
HOH
2279
F
TIP
1077
8
HOH
HOH
2280
F
TIP
1078
8
HOH
HOH
2281
F
TIP
1079
8
HOH
HOH
2282
F
TIP
1080
8
HOH
HOH
2283
F
TIP
1081
8
HOH
HOH
2284
F
n
1
1
F
n
2
2
F
n
3
3
F
n
4
4
F
ALA
5
n
5
ALA
5
F
SER
6
n
6
SER
6
F
LYS
7
n
7
LYS
7
F
LEU
8
n
8
LEU
8
F
PHE
9
n
9
PHE
9
F
SER
10
n
10
SER
10
F
ASN
11
n
11
ASN
11
F
LEU
12
n
12
LEU
12
F
PHE
13
n
13
PHE
13
F
GLY
14
n
14
GLY
14
F
ASN
15
n
15
ASN
15
F
LYS
16
n
16
LYS
16
F
GLU
17
n
17
GLU
17
F
MET
18
n
18
MET
18
F
ARG
19
n
19
ARG
19
F
ILE
20
n
20
ILE
20
F
LEU
21
n
21
LEU
21
F
MET
22
n
22
MET
22
F
VAL
23
n
23
VAL
23
F
GLY
24
n
24
GLY
24
F
LEU
25
n
25
LEU
25
F
ASP
26
n
26
ASP
26
F
GLY
27
n
27
GLY
27
F
ALA
28
n
28
ALA
28
F
GLY
29
n
29
GLY
29
F
LYS
30
n
30
LYS
30
F
THR
31
n
31
THR
31
F
THR
32
n
32
THR
32
F
VAL
33
n
33
VAL
33
F
LEU
34
n
34
LEU
34
F
TYR
35
n
35
TYR
35
F
LYS
36
n
36
LYS
36
F
LEU
37
n
37
LEU
37
F
LYS
38
n
38
LYS
38
F
LEU
39
n
39
LEU
39
F
GLY
40
n
40
GLY
40
F
GLU
41
n
41
GLU
41
F
VAL
42
n
42
VAL
42
F
ILE
43
n
43
ILE
43
F
THR
44
n
44
THR
44
F
THR
45
n
45
THR
45
F
ILE
46
n
46
ILE
46
F
PRO
47
n
47
PRO
47
F
THR
48
n
48
THR
48
F
ILE
49
n
49
ILE
49
F
GLY
50
n
50
GLY
50
F
PHE
51
n
51
PHE
51
F
ASN
52
n
52
ASN
52
F
VAL
53
n
53
VAL
53
F
GLU
54
n
54
GLU
54
F
THR
55
n
55
THR
55
F
VAL
56
n
56
VAL
56
F
GLN
57
n
57
GLN
57
F
TYR
58
n
58
TYR
58
F
LYS
59
n
59
LYS
59
F
ASN
60
n
60
ASN
60
F
ILE
61
n
61
ILE
61
F
SER
62
n
62
SER
62
F
PHE
63
n
63
PHE
63
F
THR
64
n
64
THR
64
F
VAL
65
n
65
VAL
65
F
TRP
66
n
66
TRP
66
F
ASP
67
n
67
ASP
67
F
VAL
68
n
68
VAL
68
F
GLY
69
n
69
GLY
69
F
GLY
70
n
70
GLY
70
F
GLN
71
n
71
GLN
71
F
ASP
72
n
72
ASP
72
F
ARG
73
n
73
ARG
73
F
ILE
74
n
74
ILE
74
F
ARG
75
n
75
ARG
75
F
SER
76
n
76
SER
76
F
LEU
77
n
77
LEU
77
F
TRP
78
n
78
TRP
78
F
ARG
79
n
79
ARG
79
F
HIS
80
n
80
HIS
80
F
TYR
81
n
81
TYR
81
F
TYR
82
n
82
TYR
82
F
ARG
83
n
83
ARG
83
F
ASN
84
n
84
ASN
84
F
THR
85
n
85
THR
85
F
GLU
86
n
86
GLU
86
F
GLY
87
n
87
GLY
87
F
VAL
88
n
88
VAL
88
F
ILE
89
n
89
ILE
89
F
PHE
90
n
90
PHE
90
F
VAL
91
n
91
VAL
91
F
ILE
92
n
92
ILE
92
F
ASP
93
n
93
ASP
93
F
SER
94
n
94
SER
94
F
ASN
95
n
95
ASN
95
F
ASP
96
n
96
ASP
96
F
ARG
97
n
97
ARG
97
F
SER
98
n
98
SER
98
F
ARG
99
n
99
ARG
99
F
ILE
100
n
100
ILE
100
F
GLY
101
n
101
GLY
101
F
GLU
102
n
102
GLU
102
F
ALA
103
n
103
ALA
103
F
ARG
104
n
104
ARG
104
F
GLU
105
n
105
GLU
105
F
VAL
106
n
106
VAL
106
F
MET
107
n
107
MET
107
F
GLN
108
n
108
GLN
108
F
ARG
109
n
109
ARG
109
F
MET
110
n
110
MET
110
F
LEU
111
n
111
LEU
111
F
ASN
112
n
112
ASN
112
F
GLU
113
n
113
GLU
113
F
ASP
114
n
114
ASP
114
F
GLU
115
n
115
GLU
115
F
LEU
116
n
116
LEU
116
F
ARG
117
n
117
ARG
117
F
ASN
118
n
118
ASN
118
F
ALA
119
n
119
ALA
119
F
VAL
120
n
120
VAL
120
F
TRP
121
n
121
TRP
121
F
LEU
122
n
122
LEU
122
F
VAL
123
n
123
VAL
123
F
PHE
124
n
124
PHE
124
F
ALA
125
n
125
ALA
125
F
ASN
126
n
126
ASN
126
F
LYS
127
n
127
LYS
127
F
GLN
128
n
128
GLN
128
F
ASP
129
n
129
ASP
129
F
LEU
130
n
130
LEU
130
F
PRO
131
n
131
PRO
131
F
GLU
132
n
132
GLU
132
F
ALA
133
n
133
ALA
133
F
MET
134
n
134
MET
134
F
SER
135
n
135
SER
135
F
ALA
136
n
136
ALA
136
F
ALA
137
n
137
ALA
137
F
GLU
138
n
138
GLU
138
F
ILE
139
n
139
ILE
139
F
THR
140
n
140
THR
140
F
GLU
141
n
141
GLU
141
F
LYS
142
n
142
LYS
142
F
LEU
143
n
143
LEU
143
F
GLY
144
n
144
GLY
144
F
LEU
145
n
145
LEU
145
F
HIS
146
n
146
HIS
146
F
SER
147
n
147
SER
147
F
ILE
148
n
148
ILE
148
F
ARG
149
n
149
ARG
149
F
ASN
150
n
150
ASN
150
F
ARG
151
n
151
ARG
151
F
PRO
152
n
152
PRO
152
F
TRP
153
n
153
TRP
153
F
PHE
154
n
154
PHE
154
F
ILE
155
n
155
ILE
155
F
GLN
156
n
156
GLN
156
F
SER
157
n
157
SER
157
F
THR
158
n
158
THR
158
F
CYS
159
n
159
CYS
159
F
ALA
160
n
160
ALA
160
F
THR
161
n
161
THR
161
F
SER
162
n
162
SER
162
F
GLY
163
n
163
GLY
163
F
GLU
164
n
164
GLU
164
F
GLY
165
n
165
GLY
165
F
LEU
166
n
166
LEU
166
F
TYR
167
n
167
TYR
167
F
GLU
168
n
168
GLU
168
F
GLY
169
n
169
GLY
169
F
LEU
170
n
170
LEU
170
F
GLU
171
n
171
GLU
171
F
TRP
172
n
172
TRP
172
F
LEU
173
n
173
LEU
173
F
SER
174
n
174
SER
174
F
ASN
175
n
175
ASN
175
F
ASN
176
n
176
ASN
176
F
LEU
177
n
177
LEU
177
F
LYS
178
n
178
LYS
178
F
ASN
179
n
179
ASN
179
F
GLN
180
n
180
GLN
180
F
SER
181
n
181
SER
181
F
author_defined_assembly
1
monomeric
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
F
G3D
800
C
O2B
G3D
1_555
93.7
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2078
V
O
HOH
1_555
86.4
F
G3D
800
C
O2B
G3D
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2078
V
O
HOH
1_555
172.7
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2079
V
O
HOH
1_555
177.4
F
G3D
800
C
O2B
G3D
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2079
V
O
HOH
1_555
88.9
F
HOH
2078
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2079
V
O
HOH
1_555
91.2
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2080
V
O
HOH
1_555
91.2
F
G3D
800
C
O2B
G3D
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2080
V
O
HOH
1_555
94.6
F
HOH
2078
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2080
V
O
HOH
1_555
92.6
F
HOH
2079
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2080
V
O
HOH
1_555
88.0
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
93.2
F
G3D
800
C
O2B
G3D
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
85.8
F
HOH
2078
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
86.9
F
HOH
2079
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
87.5
F
HOH
2080
V
O
HOH
1_555
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
175.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
F
N
THR
45
A
N
THR
45
F
O
VAL
53
A
O
VAL
53
F
N
TYR
58
A
N
TYR
58
F
O
ILE
61
A
O
ILE
61
F
O
SER
62
A
O
SER
62
F
N
ILE
20
A
N
ILE
20
F
N
LEU
21
A
N
LEU
21
F
O
ILE
89
A
O
ILE
89
F
N
VAL
88
A
N
VAL
88
F
O
LEU
122
A
O
LEU
122
F
N
VAL
123
A
N
VAL
123
F
O
PHE
154
A
O
PHE
154
1
F
MET
1
A
MET
1
1
Y
1
F
GLY
2
A
GLY
2
1
Y
1
F
LEU
3
A
LEU
3
1
Y
1
F
TYR
4
A
TYR
4
1
Y
1
F
F
O1
C1
EDO
EOH
2072
2047
0.68
1_555
3_555
1
F
SER
6
-89.67
-76.98
1
F
LYS
7
-166.82
-127.33
1
F
LYS
59
53.97
-115.98
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
ION.TOP
WATER_REP.PARAM
WATER.TOP
GDP3P.PAR
GDP3P.TOP
LIGAND.PAR
LIGAND.TOP
20.4
0.21
0.00
0.00
-2.35
0.00
2.14
0.235
0.005
0.204
0.204
0.204
1.60
30.91
2274
23944
23034
9.9
96.2
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB entry 1hur
Engh & Huber
FLAT MODEL
43.9014
0.354167
0.21
0.19
35.0
0.15
0.13
1.60
30.91
207
1736
107
0
1422
0.005
1.2
23.4
0.74
0.67
1.50
1.16
2.00
0.95
2.00
1.53
2.50
0.283
0.015
0.247
1.70
371
3181
3181
6
10.4
90.7
15.4
1.6
30.91
1MR3
23944
23034
0.0
0.0
0.045
1
22.9
5.5
96.2
1.6
1.7
3181
1
5.5
90.7
data collection
MAR345
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
Saccharomyces cerevisiae ADP-ribosylation Factor 2 (ScArf2) complexed with GDP-3'P at 1.6A resolution
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
7
N
N
8
N
N
F
PHE
9
A
PHE
9
HELX_P
F
GLY
14
A
GLY
14
1
1
6
F
GLY
29
A
GLY
29
HELX_P
F
LYS
38
A
LYS
38
1
2
10
F
ARG
75
A
ARG
75
HELX_P
F
ASN
84
A
ASN
84
1
3
10
F
ASP
96
A
ASP
96
HELX_P
F
SER
98
A
SER
98
5
4
3
F
ARG
99
A
ARG
99
HELX_P
F
ASN
112
A
ASN
112
1
5
14
F
GLU
113
A
GLU
113
HELX_P
F
ARG
117
A
ARG
117
5
6
5
F
SER
135
A
SER
135
HELX_P
F
GLY
144
A
GLY
144
1
7
10
F
LEU
145
A
LEU
145
HELX_P
F
ILE
148
A
ILE
148
5
8
4
F
GLY
165
A
GLY
165
HELX_P
F
LEU
177
A
LEU
177
1
9
13
covale
1.684
none
F
EOH
2047
Q
C2
EOH
1_555
F
EDO
2072
H
O1
EDO
3_545
covale
1.103
none
F
EOH
2047
Q
C1
EOH
3_555
F
EDO
2072
H
C1
EDO
1_555
covale
1.964
none
F
EOH
2047
Q
C2
EOH
3_555
F
EDO
2072
H
C1
EDO
1_555
covale
2.014
none
F
EOH
2047
Q
O
EOH
3_555
F
EDO
2072
H
O1
EDO
1_555
covale
1.684
none
F
EOH
2047
Q
C2
EOH
3_555
F
EDO
2072
H
O1
EDO
1_555
covale
1.779
one
F
EOH
2047
Q
O
EOH
3_555
F
EDO
2072
H
C2
EDO
1_555
covale
1.889
one
F
EOH
2047
Q
C1
EOH
3_555
F
EDO
2072
H
C2
EDO
1_555
covale
1.587
one
F
EOH
2047
Q
C2
EOH
3_555
F
EDO
2072
H
C2
EDO
1_555
covale
1.103
none
F
EOH
2047
Q
C1
EOH
1_555
F
EDO
2072
H
C1
EDO
3_545
covale
1.889
one
F
EOH
2047
Q
C1
EOH
1_555
F
EDO
2072
H
C2
EDO
3_545
covale
1.964
none
F
EOH
2047
Q
C2
EOH
1_555
F
EDO
2072
H
C1
EDO
3_545
covale
1.587
one
F
EOH
2047
Q
C2
EOH
1_555
F
EDO
2072
H
C2
EDO
3_545
covale
2.014
none
F
EOH
2047
Q
O
EOH
1_555
F
EDO
2072
H
O1
EDO
3_545
covale
1.206
none
F
EOH
2047
Q
O
EOH
1_555
F
EDO
2072
H
C1
EDO
3_545
covale
1.779
one
F
EOH
2047
Q
O
EOH
1_555
F
EDO
2072
H
C2
EDO
3_545
covale
1.206
none
F
EOH
2047
Q
O
EOH
3_555
F
EDO
2072
H
C1
EDO
1_555
metalc
2.150
F
THR
31
A
OG1
THR
31
1_555
F
MG
801
B
MG
MG
1_555
metalc
2.203
F
G3D
800
C
O2B
G3D
1_555
F
MG
801
B
MG
MG
1_555
metalc
2.144
F
MG
801
B
MG
MG
1_555
F
HOH
2078
V
O
HOH
1_555
metalc
2.266
F
MG
801
B
MG
MG
1_555
F
HOH
2079
V
O
HOH
1_555
metalc
2.182
F
MG
801
B
MG
MG
1_555
F
HOH
2080
V
O
HOH
1_555
metalc
2.210
F
MG
801
B
MG
MG
1_555
F
HOH
2085
V
O
HOH
1_555
SIGNALING PROTEIN
GTP-binding, GDP-3'Phosphate, small GTPase, signal transduction, SIGNALING PROTEIN
ARF2_YEAST
UNP
1
0
P19146
MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH
YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCA
TSGEGLYEGLEWLSNNLKNQS
0
180
1MR3
1
181
P19146
F
1
1
181
7
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
F
ILE
43
A
ILE
43
F
THR
48
A
THR
48
F
PHE
51
A
PHE
51
F
TYR
58
A
TYR
58
F
ILE
61
A
ILE
61
F
VAL
68
A
VAL
68
F
MET
18
A
MET
18
F
LEU
25
A
LEU
25
F
GLY
87
A
GLY
87
F
ASP
93
A
ASP
93
F
VAL
120
A
VAL
120
F
ASN
126
A
ASN
126
F
TRP
153
A
TRP
153
F
SER
157
A
SER
157
BINDING SITE FOR RESIDUE MG F 801
F
MG
801
Software
6
BINDING SITE FOR RESIDUE G3D F 800
F
G3D
800
Software
26
BINDING SITE FOR RESIDUE EDO F 2065
F
EDO
2065
Software
10
BINDING SITE FOR RESIDUE EDO F 2067
F
EDO
2067
Software
3
BINDING SITE FOR RESIDUE EDO F 2069
F
EDO
2069
Software
7
BINDING SITE FOR RESIDUE EDO F 2071
F
EDO
2071
Software
2
BINDING SITE FOR RESIDUE EDO F 2072
F
EDO
2072
Software
9
BINDING SITE FOR RESIDUE EDO F 2073
F
EDO
2073
Software
7
BINDING SITE FOR RESIDUE EDO F 2074
F
EDO
2074
Software
6
BINDING SITE FOR RESIDUE EDO F 2075
F
EDO
2075
Software
8
BINDING SITE FOR RESIDUE EDO F 2076
F
EDO
2076
Software
3
BINDING SITE FOR RESIDUE EDO F 2077
F
EDO
2077
Software
4
BINDING SITE FOR RESIDUE GOL F 950
F
GOL
950
Software
5
BINDING SITE FOR RESIDUE GOL F 954
F
GOL
954
Software
6
BINDING SITE FOR RESIDUE EOH F 2046
F
EOH
2046
Software
7
BINDING SITE FOR RESIDUE EOH F 2047
F
EOH
2047
Software
9
BINDING SITE FOR RESIDUE EOH F 2048
F
EOH
2048
Software
4
BINDING SITE FOR RESIDUE EOH F 2049
F
EOH
2049
Software
2
BINDING SITE FOR RESIDUE PDO F 2008
F
PDO
2008
Software
8
BINDING SITE FOR RESIDUE PDO F 2009
F
PDO
2009
Software
7
F
THR
31
A
THR
31
6
1_555
F
G3D
800
C
G3D
6
1_555
F
HOH
2078
V
HOH
6
1_555
F
HOH
2079
V
HOH
6
1_555
F
HOH
2080
V
HOH
6
1_555
F
HOH
2085
V
HOH
6
1_555
F
ASP
26
A
ASP
26
26
1_555
F
GLY
27
A
GLY
27
26
1_555
F
ALA
28
A
ALA
28
26
1_555
F
GLY
29
A
GLY
29
26
1_555
F
LYS
30
A
LYS
30
26
1_555
F
THR
31
A
THR
31
26
1_555
F
THR
32
A
THR
32
26
1_555
F
ASN
126
A
ASN
126
26
1_555
F
LYS
127
A
LYS
127
26
1_555
F
ASP
129
A
ASP
129
26
1_555
F
CYS
159
A
CYS
159
26
1_555
F
ALA
160
A
ALA
160
26
1_555
F
THR
161
A
THR
161
26
1_555
F
MG
801
B
MG
26
1_555
F
HOH
2079
V
HOH
26
1_555
F
HOH
2085
V
HOH
26
1_555
F
HOH
2090
V
HOH
26
1_555
F
HOH
2091
V
HOH
26
1_555
F
HOH
2119
V
HOH
26
1_555
F
HOH
2139
V
HOH
26
1_555
F
HOH
2186
V
HOH
26
1_555
F
HOH
2189
V
HOH
26
1_555
F
HOH
2191
V
HOH
26
1_555
F
HOH
2193
V
HOH
26
4_455
F
HOH
2202
V
HOH
26
4_455
F
HOH
2233
V
HOH
26
4_455
F
THR
48
A
THR
48
10
3_545
F
ILE
49
A
ILE
49
10
3_545
F
GLY
50
A
GLY
50
10
3_545
F
PHE
51
A
PHE
51
10
3_545
F
SER
135
A
SER
135
10
1_555
F
PDO
2009
U
PDO
10
3_545
F
EOH
2047
Q
EOH
10
1_555
F
EDO
2072
H
EDO
10
3_545
F
HOH
2098
V
HOH
10
1_555
F
HOH
2144
V
HOH
10
3_545
F
PRO
152
A
PRO
152
3
1_555
F
TRP
153
A
TRP
153
3
1_555
F
HOH
2128
V
HOH
3
1_555
F
LYS
16
A
LYS
16
7
1_554
F
ASP
93
A
ASP
93
7
1_555
F
ASN
95
A
ASN
95
7
1_555
F
LEU
130
A
LEU
130
7
1_555
F
HOH
2110
V
HOH
7
1_555
F
HOH
2187
V
HOH
7
1_555
F
HOH
2209
V
HOH
7
1_555
F
ASN
112
A
ASN
112
2
1_555
F
ASP
114
A
ASP
114
2
1_555
F
THR
48
A
THR
48
9
1_555
F
ARG
75
A
ARG
75
9
1_555
F
TRP
78
A
TRP
78
9
1_555
F
SER
135
A
SER
135
9
3_555
F
PDO
2009
U
PDO
9
1_555
F
EOH
2047
Q
EOH
9
3_555
F
EDO
2065
D
EDO
9
3_555
F
HOH
2112
V
HOH
9
1_555
F
HOH
2222
V
HOH
9
3_555
F
THR
32
A
THR
32
7
1_555
F
LYS
36
A
LYS
36
7
1_555
F
THR
161
A
THR
161
7
1_555
F
HOH
2089
V
HOH
7
1_555
F
HOH
2106
V
HOH
7
1_555
F
HOH
2189
V
HOH
7
1_555
F
HOH
2199
V
HOH
7
4_455
F
THR
48
A
THR
48
6
3_545
F
ARG
97
A
ARG
97
6
1_555
F
GLU
138
A
GLU
138
6
1_555
F
HOH
2185
V
HOH
6
1_555
F
HOH
2222
V
HOH
6
1_555
F
HOH
2260
V
HOH
6
1_555
F
ILE
20
A
ILE
20
8
1_555
F
LEU
21
A
LEU
21
8
1_555
F
THR
64
A
THR
64
8
1_555
F
TYR
81
A
TYR
81
8
1_555
F
ASN
84
A
ASN
84
8
1_555
F
THR
85
A
THR
85
8
1_555
F
HOH
2195
V
HOH
8
1_555
F
HOH
2284
V
HOH
8
1_555
F
LYS
36
A
LYS
36
3
1_555
F
LYS
38
A
LYS
38
3
1_555
F
EDO
2077
M
EDO
3
1_555
F
SER
162
A
SER
162
4
1_555
F
GLY
163
A
GLY
163
4
1_555
F
GLU
164
A
GLU
164
4
1_555
F
EDO
2076
L
EDO
4
1_555
F
ARG
83
A
ARG
83
5
1_555
F
GLU
115
A
GLU
115
5
1_555
F
ARG
117
A
ARG
117
5
1_555
F
ASN
118
A
ASN
118
5
1_555
F
HOH
2162
V
HOH
5
1_555
F
GLY
50
A
GLY
50
6
1_555
F
ASN
52
A
ASN
52
6
1_555
F
TRP
66
A
TRP
66
6
1_555
F
ASP
67
A
ASP
67
6
1_555
F
PDO
2008
T
PDO
6
1_555
F
PDO
2009
U
PDO
6
1_555
F
LEU
25
A
LEU
25
7
1_555
F
ASP
93
A
ASP
93
7
1_555
F
ASP
96
A
ASP
96
7
1_555
F
ARG
99
A
ARG
99
7
1_555
F
ILE
100
A
ILE
100
7
1_555
F
ALA
103
A
ALA
103
7
1_555
F
HOH
2094
V
HOH
7
1_555
F
THR
48
A
THR
48
9
3_545
F
PHE
51
A
PHE
51
9
3_545
F
ARG
75
A
ARG
75
9
3_545
F
TRP
78
A
TRP
78
9
3_545
F
SER
135
A
SER
135
9
1_555
F
EDO
2065
D
EDO
9
1_555
F
EDO
2072
H
EDO
9
3_545
F
HOH
2112
V
HOH
9
3_545
F
HOH
2222
V
HOH
9
1_555
F
GLN
71
A
GLN
71
4
3_545
F
GLN
156
A
GLN
156
4
1_555
F
GLU
168
A
GLU
168
4
1_555
F
HOH
2188
V
HOH
4
1_555
F
ARG
73
A
ARG
73
2
3_545
F
HOH
2190
V
HOH
2
1_555
F
ASN
52
A
ASN
52
8
1_555
F
GLU
54
A
GLU
54
8
1_555
F
VAL
65
A
VAL
65
8
1_555
F
TRP
66
A
TRP
66
8
1_555
F
ASP
67
A
ASP
67
8
1_555
F
GOL
954
O
GOL
8
1_555
F
HOH
2078
V
HOH
8
1_555
F
HOH
2080
V
HOH
8
1_555
F
ASP
72
A
ASP
72
7
1_555
F
ARG
73
A
ARG
73
7
1_555
F
TRP
78
A
TRP
78
7
1_555
F
GOL
954
O
GOL
7
1_555
F
EDO
2065
D
EDO
7
3_555
F
EDO
2072
H
EDO
7
1_555
F
HOH
2178
V
HOH
7
1_555
18
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