0.015858
0.009156
0.000000
0.000000
0.018311
0.000000
0.000000
0.000000
0.011988
0.00000
0.00000
0.00000
Kumar, M.
Kannan, K.K.
Hosur, M.V.
Bhavesh, N.S.
Chatterjee, A.
Mittal, R.
Hosur, R.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
63.060
63.060
83.420
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
294
395
401
10.1016/S0006-291X(02)00482-5
12051725
Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations.
2002
10.2210/pdb1lv1/pdb
pdb_00001lv1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
Totally reflecting MSC mirrors
IMAGE PLATE
2001-01-01
RIGAKU RAXIS IIC
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200HB
Tethered dimer linked by GGSSG
21902.760
HIV-1 protease
3.4.23.16
C95M/C1095A
1
man
polymer
18.015
water
55
nat
water
no
no
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
1
99
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET11a
Lentivirus
Escherichia
Escherichia coli
sample
105
203
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET11a
1
2.18
43.70
VAPOR DIFFUSION, HANGING DROP
6.2
5% saturated ammonium sulfate, 200mM sodium phosphate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
entity_src_gen
software
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Source and taxonomy
Database references
1
0
2002-06-19
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-08-16
1
4
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
1G6L contains the tethered HIV-1 protease carrying the single mutation C95M on one subunit only.
RCSB
Y
PDBJ
2002-05-24
REL
REL
HOH
water
WAT
401
2
HOH
HOH
401
A
WAT
402
2
HOH
HOH
402
A
WAT
403
2
HOH
HOH
403
A
WAT
404
2
HOH
HOH
404
A
WAT
405
2
HOH
HOH
405
A
WAT
406
2
HOH
HOH
406
A
WAT
407
2
HOH
HOH
407
A
WAT
408
2
HOH
HOH
408
A
WAT
409
2
HOH
HOH
409
A
WAT
410
2
HOH
HOH
410
A
WAT
411
2
HOH
HOH
411
A
WAT
412
2
HOH
HOH
412
A
WAT
413
2
HOH
HOH
413
A
WAT
414
2
HOH
HOH
414
A
WAT
415
2
HOH
HOH
415
A
WAT
416
2
HOH
HOH
416
A
WAT
417
2
HOH
HOH
417
A
WAT
418
2
HOH
HOH
418
A
WAT
419
2
HOH
HOH
419
A
WAT
420
2
HOH
HOH
420
A
WAT
421
2
HOH
HOH
421
A
WAT
422
2
HOH
HOH
422
A
WAT
423
2
HOH
HOH
423
A
WAT
424
2
HOH
HOH
424
A
WAT
425
2
HOH
HOH
425
A
WAT
426
2
HOH
HOH
426
A
WAT
427
2
HOH
HOH
427
A
WAT
428
2
HOH
HOH
428
A
WAT
429
2
HOH
HOH
429
A
WAT
430
2
HOH
HOH
430
A
WAT
431
2
HOH
HOH
431
A
WAT
432
2
HOH
HOH
432
A
WAT
433
2
HOH
HOH
433
A
WAT
434
2
HOH
HOH
434
A
WAT
435
2
HOH
HOH
435
A
WAT
436
2
HOH
HOH
436
A
WAT
437
2
HOH
HOH
437
A
WAT
438
2
HOH
HOH
438
A
WAT
439
2
HOH
HOH
439
A
WAT
440
2
HOH
HOH
440
A
WAT
441
2
HOH
HOH
441
A
WAT
442
2
HOH
HOH
442
A
WAT
443
2
HOH
HOH
443
A
WAT
444
2
HOH
HOH
444
A
WAT
445
2
HOH
HOH
445
A
WAT
446
2
HOH
HOH
446
A
WAT
447
2
HOH
HOH
447
A
WAT
448
2
HOH
HOH
448
A
WAT
449
2
HOH
HOH
449
A
WAT
450
2
HOH
HOH
450
A
WAT
451
2
HOH
HOH
451
A
WAT
452
2
HOH
HOH
452
A
WAT
453
2
HOH
HOH
453
A
WAT
454
2
HOH
HOH
454
A
WAT
455
2
HOH
HOH
455
A
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
VAL
3
n
3
VAL
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
MET
95
n
95
MET
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
n
100
996
A
n
101
997
A
n
102
998
A
n
103
999
A
n
104
1000
A
PRO
1001
n
105
PRO
1001
A
GLN
1002
n
106
GLN
1002
A
VAL
1003
n
107
VAL
1003
A
THR
1004
n
108
THR
1004
A
LEU
1005
n
109
LEU
1005
A
TRP
1006
n
110
TRP
1006
A
GLN
1007
n
111
GLN
1007
A
ARG
1008
n
112
ARG
1008
A
PRO
1009
n
113
PRO
1009
A
LEU
1010
n
114
LEU
1010
A
VAL
1011
n
115
VAL
1011
A
THR
1012
n
116
THR
1012
A
ILE
1013
n
117
ILE
1013
A
LYS
1014
n
118
LYS
1014
A
ILE
1015
n
119
ILE
1015
A
GLY
1016
n
120
GLY
1016
A
GLY
1017
n
121
GLY
1017
A
GLN
1018
n
122
GLN
1018
A
LEU
1019
n
123
LEU
1019
A
LYS
1020
n
124
LYS
1020
A
GLU
1021
n
125
GLU
1021
A
ALA
1022
n
126
ALA
1022
A
LEU
1023
n
127
LEU
1023
A
LEU
1024
n
128
LEU
1024
A
ASP
1025
n
129
ASP
1025
A
THR
1026
n
130
THR
1026
A
GLY
1027
n
131
GLY
1027
A
ALA
1028
n
132
ALA
1028
A
ASP
1029
n
133
ASP
1029
A
ASP
1030
n
134
ASP
1030
A
THR
1031
n
135
THR
1031
A
VAL
1032
n
136
VAL
1032
A
LEU
1033
n
137
LEU
1033
A
GLU
1034
n
138
GLU
1034
A
GLU
1035
n
139
GLU
1035
A
MET
1036
n
140
MET
1036
A
SER
1037
n
141
SER
1037
A
LEU
1038
n
142
LEU
1038
A
PRO
1039
n
143
PRO
1039
A
GLY
1040
n
144
GLY
1040
A
ARG
1041
n
145
ARG
1041
A
TRP
1042
n
146
TRP
1042
A
LYS
1043
n
147
LYS
1043
A
PRO
1044
n
148
PRO
1044
A
LYS
1045
n
149
LYS
1045
A
MET
1046
n
150
MET
1046
A
ILE
1047
n
151
ILE
1047
A
GLY
1048
n
152
GLY
1048
A
GLY
1049
n
153
GLY
1049
A
ILE
1050
n
154
ILE
1050
A
GLY
1051
n
155
GLY
1051
A
GLY
1052
n
156
GLY
1052
A
PHE
1053
n
157
PHE
1053
A
ILE
1054
n
158
ILE
1054
A
LYS
1055
n
159
LYS
1055
A
VAL
1056
n
160
VAL
1056
A
ARG
1057
n
161
ARG
1057
A
GLN
1058
n
162
GLN
1058
A
TYR
1059
n
163
TYR
1059
A
ASP
1060
n
164
ASP
1060
A
GLN
1061
n
165
GLN
1061
A
ILE
1062
n
166
ILE
1062
A
LEU
1063
n
167
LEU
1063
A
ILE
1064
n
168
ILE
1064
A
GLU
1065
n
169
GLU
1065
A
ILE
1066
n
170
ILE
1066
A
CYS
1067
n
171
CYS
1067
A
GLY
1068
n
172
GLY
1068
A
HIS
1069
n
173
HIS
1069
A
LYS
1070
n
174
LYS
1070
A
ALA
1071
n
175
ALA
1071
A
ILE
1072
n
176
ILE
1072
A
GLY
1073
n
177
GLY
1073
A
THR
1074
n
178
THR
1074
A
VAL
1075
n
179
VAL
1075
A
LEU
1076
n
180
LEU
1076
A
VAL
1077
n
181
VAL
1077
A
GLY
1078
n
182
GLY
1078
A
PRO
1079
n
183
PRO
1079
A
THR
1080
n
184
THR
1080
A
PRO
1081
n
185
PRO
1081
A
VAL
1082
n
186
VAL
1082
A
ASN
1083
n
187
ASN
1083
A
ILE
1084
n
188
ILE
1084
A
ILE
1085
n
189
ILE
1085
A
GLY
1086
n
190
GLY
1086
A
ARG
1087
n
191
ARG
1087
A
ASN
1088
n
192
ASN
1088
A
LEU
1089
n
193
LEU
1089
A
LEU
1090
n
194
LEU
1090
A
THR
1091
n
195
THR
1091
A
GLN
1092
n
196
GLN
1092
A
ILE
1093
n
197
ILE
1093
A
GLY
1094
n
198
GLY
1094
A
ALA
1095
n
199
ALA
1095
A
THR
1096
n
200
THR
1096
A
LEU
1097
n
201
LEU
1097
A
ASN
1098
n
202
ASN
1098
A
PHE
1099
n
203
PHE
1099
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
3
A
N
VAL
3
A
O
LEU
1097
A
O
LEU
201
A
O
ASN
1098
A
O
ASN
202
A
N
THR
96
A
N
THR
96
A
O
LEU
97
A
O
LEU
97
A
N
VAL
1003
A
N
VAL
107
A
N
GLY
49
A
N
GLY
49
A
O
GLY
52
A
O
GLY
52
A
N
GLU
65
A
N
GLU
65
A
O
LYS
14
A
O
LYS
14
A
N
ILE
15
A
N
ILE
15
A
O
GLN
18
A
O
GLN
18
A
O
LEU
23
A
O
LEU
23
A
N
ILE
85
A
N
ILE
85
A
N
ILE
84
A
N
ILE
84
A
O
VAL
32
A
O
VAL
32
A
N
LEU
33
A
N
LEU
33
A
O
LEU
76
A
O
LEU
76
A
O
VAL
77
A
O
VAL
77
A
N
ARG
57
A
N
ARG
57
A
N
GLY
1049
A
N
GLY
153
A
O
GLY
1052
A
O
GLY
156
A
N
GLU
1065
A
N
GLU
169
A
O
LYS
1014
A
O
LYS
118
A
N
ILE
1015
A
N
ILE
119
A
O
GLN
1018
A
O
GLN
122
A
O
LEU
1023
A
O
LEU
127
A
N
ILE
1085
A
N
ILE
189
A
N
ILE
1084
A
N
ILE
188
A
O
VAL
1032
A
O
VAL
136
A
N
LEU
1033
A
N
LEU
137
A
O
LEU
1076
A
O
LEU
180
A
O
VAL
1077
A
O
VAL
181
A
N
ARG
1057
A
N
ARG
161
1
A
GLY
996
A
GLY
100
1
Y
1
A
GLY
997
A
GLY
101
1
Y
1
A
SER
998
A
SER
102
1
Y
1
A
SER
999
A
SER
103
1
Y
1
A
GLY
1000
A
GLY
104
1
Y
1
A
CYS
1067
33.94
43.63
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
39.7
0.95
6.10
0.00
0.95
0.00
-1.91
0.2600000
0.013
0.1940000
0.1940000
2.10
14.75
428
11676
8047
5.3
73.3
RANDOM
319647.95
0.000000
1
RESTRAINED
THROUGHOUT
1.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
53.9922
0.326686
0.33
0.25
8.0
0.36
0.27
2.10
14.75
55
1568
0
0
1513
0.007
1.4
26.2
0.81
1.49
1.50
2.43
2.00
2.30
2.00
3.38
2.50
0.3920000
0.072
0.2910000
2.20
30
610
8
4.7
47.1
34.7
2.1
15.0
1LV1
51200
11676
2.0
1.0
0.0710000
1
10.1
93.1
2.1
2.2
47.0
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal Structure Analysis of the non-active site mutant of tethered HIV-1 protease to 2.1A resolution
1
N
N
2
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
A
GLY
1086
A
GLY
190
HELX_P
A
THR
1091
A
THR
195
1
3
6
A
GLN
1092
A
GLN
196
HELX_P
A
GLY
1094
A
GLY
198
5
4
3
HYDROLASE
beta-ribbon flap, Hydrolase
POL_HV1H2
UNP
1
1
P04585
57
155
1LV1
1
99
P04585
A
1
1
99
57
155
1LV1
1001
1099
P04585
A
1
105
203
1
CYS
engineered mutation
MET
95
1LV1
A
P04585
UNP
151
95
1
linker
GLY
996
1LV1
A
P04585
UNP
100
1
linker
GLY
997
1LV1
A
P04585
UNP
101
1
linker
SER
998
1LV1
A
P04585
UNP
102
1
linker
SER
999
1LV1
A
P04585
UNP
103
1
linker
GLY
1000
1LV1
A
P04585
UNP
104
1
CYS
engineered mutation
ALA
1095
1LV1
A
P04585
UNP
151
199
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
A
GLN
2
A
GLN
2
A
VAL
3
A
VAL
3
A
THR
1096
A
THR
200
A
ASN
1098
A
ASN
202
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
A
GLN
1002
A
GLN
106
A
THR
1004
A
THR
108
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
VAL
32
A
VAL
32
A
LEU
33
A
LEU
33
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
LYS
1043
A
LYS
147
A
GLY
1049
A
GLY
153
A
GLY
1052
A
GLY
156
A
ILE
1066
A
ILE
170
A
LEU
1010
A
LEU
114
A
ILE
1015
A
ILE
119
A
GLN
1018
A
GLN
122
A
LEU
1024
A
LEU
128
A
ILE
1084
A
ILE
188
A
ILE
1085
A
ILE
189
A
VAL
1032
A
VAL
136
A
LEU
1033
A
LEU
137
A
HIS
1069
A
HIS
173
A
VAL
1077
A
VAL
181
A
GLY
1052
A
GLY
156
A
ILE
1066
A
ILE
170
169
P 61