0.019992
0.000000
0.000000
0.000000
0.011635
0.000000
0.000000
0.000000
0.005935
0.00000
0.00000
0.00000
Barycki, J.J.
Banaszak, L.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.020
85.950
168.505
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
S
P
N
251
N
O
N
252
N
O
N
253
N
O
N
254
N
C
N
255
R
C
N
256
N
O
N
257
S
C
N
258
N
O
N
259
R
C
N
260
N
O
N
261
R
C
Y
262
N
N
Y
263
N
C
Y
264
N
N
Y
265
N
C
Y
266
N
C
N
267
N
N
Y
268
N
N
Y
269
N
C
Y
270
N
N
Y
271
N
C
N
272
N
O
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
C
N
278
R
C
N
279
N
O
N
280
S
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
R
C
Y
285
N
N
Y
286
N
C
Y
287
N
C
N
288
N
C
N
289
N
O
N
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
R
C
N
380
N
O
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
N
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
Y
299
N
doub
N
300
N
sing
N
301
N
sing
Y
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
To be Published
0353
Crystal Structure of the E110Q Mutant of L-3-Hydroxyacyl-CoA Dehydrogenase in Complex with NAD
US
Biochemistry
BICHAW
0033
0006-2960
38
5786
5798
10.1021/bi9829027
BIOCHEMICAL CHARACTERIZATION AND CRYSTAL STRUCTURE DETERMINATION OF HUMAN HEART SHORT CHAIN L-3-HYDROXYACYL-COA DEHYDROGENASE PROVIDE INSIGHTS INTO CATALYTIC MECHANISM
1999
10.2210/pdb1lsj/pdb
pdb_00001lsj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2001-06-29
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
32867.730
3-HYDROXYACYL-COA DEHYDROGENASE
1.1.1.35
E110Q
2
man
polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
syn
non-polymer
18.015
water
159
nat
water
L-3-HYDROXYACYL-COA DEHYDROGENASE, Short chain 3-hydroxyacyl-CoA dehydrogenase, HCDH
no
no
SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEF
VEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF
NPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGA
GYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK
SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEF
VEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF
NPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGA
GYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
HCDH
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)pLysS
plasmid
pET28a
1
2.75
55.34
VAPOR DIFFUSION, SITTING DROP
6.5
50 mM N-[2-ACETAMIDO]-2-IMINODIACETIC ACID WITHIN THE PRECIPITANT RANGE OF 14% TO 19% POLYETHYLENE GLYCOL 4000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
diffrn_source
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2004-02-03
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-04-04
1
4
2021-10-27
1
5
2024-02-14
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
3HAD IS THE wild-type L-hydroxyacyl-CoA dehydrogenase in complex with NAD
1LSO is the CRYSTAL STRUCTURE OF THE S137A MUTANT OF L-3-HYDROXYACYL-COA DEHYDROGENASE IN COMPLEX WITH NAD
RCSB
Y
RCSB
2002-05-17
REL
REL
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
HOH
water
3HAD
PDB
experimental model
NAD
350
2
NAD
NAD
350
A
NAD
750
2
NAD
NAD
750
B
WAT
801
3
HOH
HOH
801
A
WAT
803
3
HOH
HOH
803
A
WAT
808
3
HOH
HOH
808
A
WAT
810
3
HOH
HOH
810
A
WAT
812
3
HOH
HOH
812
A
WAT
814
3
HOH
HOH
814
A
WAT
817
3
HOH
HOH
817
A
WAT
818
3
HOH
HOH
818
A
WAT
820
3
HOH
HOH
820
A
WAT
821
3
HOH
HOH
821
A
WAT
822
3
HOH
HOH
822
A
WAT
825
3
HOH
HOH
825
A
WAT
826
3
HOH
HOH
826
A
WAT
827
3
HOH
HOH
827
A
WAT
830
3
HOH
HOH
830
A
WAT
831
3
HOH
HOH
831
A
WAT
832
3
HOH
HOH
832
A
WAT
833
3
HOH
HOH
833
A
WAT
835
3
HOH
HOH
835
A
WAT
836
3
HOH
HOH
836
A
WAT
839
3
HOH
HOH
839
A
WAT
840
3
HOH
HOH
840
A
WAT
842
3
HOH
HOH
842
A
WAT
843
3
HOH
HOH
843
A
WAT
846
3
HOH
HOH
846
A
WAT
849
3
HOH
HOH
849
A
WAT
853
3
HOH
HOH
853
A
WAT
856
3
HOH
HOH
856
A
WAT
857
3
HOH
HOH
857
A
WAT
860
3
HOH
HOH
860
A
WAT
861
3
HOH
HOH
861
A
WAT
862
3
HOH
HOH
862
A
WAT
863
3
HOH
HOH
863
A
WAT
867
3
HOH
HOH
867
A
WAT
868
3
HOH
HOH
868
A
WAT
869
3
HOH
HOH
869
A
WAT
870
3
HOH
HOH
870
A
WAT
874
3
HOH
HOH
874
A
WAT
875
3
HOH
HOH
875
A
WAT
876
3
HOH
HOH
876
A
WAT
877
3
HOH
HOH
877
A
WAT
879
3
HOH
HOH
879
A
WAT
880
3
HOH
HOH
880
A
WAT
882
3
HOH
HOH
882
A
WAT
883
3
HOH
HOH
883
A
WAT
885
3
HOH
HOH
885
A
WAT
888
3
HOH
HOH
888
A
WAT
889
3
HOH
HOH
889
A
WAT
891
3
HOH
HOH
891
A
WAT
892
3
HOH
HOH
892
A
WAT
894
3
HOH
HOH
894
A
WAT
895
3
HOH
HOH
895
A
WAT
896
3
HOH
HOH
896
A
WAT
898
3
HOH
HOH
898
A
WAT
899
3
HOH
HOH
899
A
WAT
900
3
HOH
HOH
900
A
WAT
901
3
HOH
HOH
901
A
WAT
902
3
HOH
HOH
902
A
WAT
903
3
HOH
HOH
903
A
WAT
904
3
HOH
HOH
904
A
WAT
905
3
HOH
HOH
905
A
WAT
906
3
HOH
HOH
906
A
WAT
907
3
HOH
HOH
907
A
WAT
908
3
HOH
HOH
908
A
WAT
909
3
HOH
HOH
909
A
WAT
910
3
HOH
HOH
910
A
WAT
912
3
HOH
HOH
912
A
WAT
913
3
HOH
HOH
913
A
WAT
914
3
HOH
HOH
914
A
WAT
916
3
HOH
HOH
916
A
WAT
917
3
HOH
HOH
917
A
WAT
918
3
HOH
HOH
918
A
WAT
920
3
HOH
HOH
920
A
WAT
922
3
HOH
HOH
922
A
WAT
925
3
HOH
HOH
925
A
WAT
926
3
HOH
HOH
926
A
WAT
928
3
HOH
HOH
928
A
WAT
929
3
HOH
HOH
929
A
WAT
930
3
HOH
HOH
930
A
WAT
932
3
HOH
HOH
932
A
WAT
933
3
HOH
HOH
933
A
WAT
938
3
HOH
HOH
938
A
WAT
939
3
HOH
HOH
939
A
WAT
940
3
HOH
HOH
940
A
WAT
941
3
HOH
HOH
941
A
WAT
942
3
HOH
HOH
942
A
WAT
943
3
HOH
HOH
943
A
WAT
945
3
HOH
HOH
945
A
WAT
947
3
HOH
HOH
947
A
WAT
949
3
HOH
HOH
949
A
WAT
951
3
HOH
HOH
951
A
WAT
952
3
HOH
HOH
952
A
WAT
953
3
HOH
HOH
953
A
WAT
955
3
HOH
HOH
955
A
WAT
956
3
HOH
HOH
956
A
WAT
958
3
HOH
HOH
958
A
WAT
802
3
HOH
HOH
802
B
WAT
804
3
HOH
HOH
804
B
WAT
805
3
HOH
HOH
805
B
WAT
806
3
HOH
HOH
806
B
WAT
807
3
HOH
HOH
807
B
WAT
809
3
HOH
HOH
809
B
WAT
811
3
HOH
HOH
811
B
WAT
813
3
HOH
HOH
813
B
WAT
815
3
HOH
HOH
815
B
WAT
816
3
HOH
HOH
816
B
WAT
819
3
HOH
HOH
819
B
WAT
823
3
HOH
HOH
823
B
WAT
824
3
HOH
HOH
824
B
WAT
828
3
HOH
HOH
828
B
WAT
829
3
HOH
HOH
829
B
WAT
834
3
HOH
HOH
834
B
WAT
837
3
HOH
HOH
837
B
WAT
838
3
HOH
HOH
838
B
WAT
841
3
HOH
HOH
841
B
WAT
844
3
HOH
HOH
844
B
WAT
845
3
HOH
HOH
845
B
WAT
847
3
HOH
HOH
847
B
WAT
848
3
HOH
HOH
848
B
WAT
850
3
HOH
HOH
850
B
WAT
851
3
HOH
HOH
851
B
WAT
852
3
HOH
HOH
852
B
WAT
854
3
HOH
HOH
854
B
WAT
855
3
HOH
HOH
855
B
WAT
858
3
HOH
HOH
858
B
WAT
859
3
HOH
HOH
859
B
WAT
864
3
HOH
HOH
864
B
WAT
865
3
HOH
HOH
865
B
WAT
866
3
HOH
HOH
866
B
WAT
871
3
HOH
HOH
871
B
WAT
872
3
HOH
HOH
872
B
WAT
873
3
HOH
HOH
873
B
WAT
878
3
HOH
HOH
878
B
WAT
881
3
HOH
HOH
881
B
WAT
884
3
HOH
HOH
884
B
WAT
886
3
HOH
HOH
886
B
WAT
887
3
HOH
HOH
887
B
WAT
890
3
HOH
HOH
890
B
WAT
893
3
HOH
HOH
893
B
WAT
897
3
HOH
HOH
897
B
WAT
911
3
HOH
HOH
911
B
WAT
915
3
HOH
HOH
915
B
WAT
919
3
HOH
HOH
919
B
WAT
921
3
HOH
HOH
921
B
WAT
923
3
HOH
HOH
923
B
WAT
924
3
HOH
HOH
924
B
WAT
927
3
HOH
HOH
927
B
WAT
931
3
HOH
HOH
931
B
WAT
934
3
HOH
HOH
934
B
WAT
935
3
HOH
HOH
935
B
WAT
936
3
HOH
HOH
936
B
WAT
937
3
HOH
HOH
937
B
WAT
944
3
HOH
HOH
944
B
WAT
946
3
HOH
HOH
946
B
WAT
948
3
HOH
HOH
948
B
WAT
950
3
HOH
HOH
950
B
WAT
954
3
HOH
HOH
954
B
WAT
957
3
HOH
HOH
957
B
WAT
959
3
HOH
HOH
959
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
LYS
12
n
12
LYS
12
A
ILE
13
n
13
ILE
13
A
ILE
14
n
14
ILE
14
A
VAL
15
n
15
VAL
15
A
LYS
16
n
16
LYS
16
A
HIS
17
n
17
HIS
17
A
VAL
18
n
18
VAL
18
A
THR
19
n
19
THR
19
A
VAL
20
n
20
VAL
20
A
ILE
21
n
21
ILE
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
LEU
25
n
25
LEU
25
A
MET
26
n
26
MET
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
ALA
31
n
31
ALA
31
A
GLN
32
n
32
GLN
32
A
VAL
33
n
33
VAL
33
A
ALA
34
n
34
ALA
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
THR
37
n
37
THR
37
A
GLY
38
n
38
GLY
38
A
HIS
39
n
39
HIS
39
A
THR
40
n
40
THR
40
A
VAL
41
n
41
VAL
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
VAL
44
n
44
VAL
44
A
ASP
45
n
45
ASP
45
A
GLN
46
n
46
GLN
46
A
THR
47
n
47
THR
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
ILE
50
n
50
ILE
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
LYS
53
n
53
LYS
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
GLY
57
n
57
GLY
57
A
ILE
58
n
58
ILE
58
A
GLU
59
n
59
GLU
59
A
GLU
60
n
60
GLU
60
A
SER
61
n
61
SER
61
A
LEU
62
n
62
LEU
62
A
ARG
63
n
63
ARG
63
A
LYS
64
n
64
LYS
64
A
VAL
65
n
65
VAL
65
A
ALA
66
n
66
ALA
66
A
LYS
67
n
67
LYS
67
A
LYS
68
n
68
LYS
68
A
LYS
69
n
69
LYS
69
A
PHE
70
n
70
PHE
70
A
ALA
71
n
71
ALA
71
A
GLU
72
n
72
GLU
72
A
ASN
73
n
73
ASN
73
A
PRO
74
n
74
PRO
74
A
LYS
75
n
75
LYS
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
ASP
78
n
78
ASP
78
A
GLU
79
n
79
GLU
79
A
PHE
80
n
80
PHE
80
A
VAL
81
n
81
VAL
81
A
GLU
82
n
82
GLU
82
A
LYS
83
n
83
LYS
83
A
THR
84
n
84
THR
84
A
LEU
85
n
85
LEU
85
A
SER
86
n
86
SER
86
A
THR
87
n
87
THR
87
A
ILE
88
n
88
ILE
88
A
ALA
89
n
89
ALA
89
A
THR
90
n
90
THR
90
A
SER
91
n
91
SER
91
A
THR
92
n
92
THR
92
A
ASP
93
n
93
ASP
93
A
ALA
94
n
94
ALA
94
A
ALA
95
n
95
ALA
95
A
SER
96
n
96
SER
96
A
VAL
97
n
97
VAL
97
A
VAL
98
n
98
VAL
98
A
HIS
99
n
99
HIS
99
A
SER
100
n
100
SER
100
A
THR
101
n
101
THR
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
VAL
105
n
105
VAL
105
A
GLU
106
n
106
GLU
106
A
ALA
107
n
107
ALA
107
A
ILE
108
n
108
ILE
108
A
VAL
109
n
109
VAL
109
A
GLN
110
n
110
GLN
110
A
ASN
111
n
111
ASN
111
A
LEU
112
n
112
LEU
112
A
LYS
113
n
113
LYS
113
A
VAL
114
n
114
VAL
114
A
LYS
115
n
115
LYS
115
A
ASN
116
n
116
ASN
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
PHE
119
n
119
PHE
119
A
LYS
120
n
120
LYS
120
A
ARG
121
n
121
ARG
121
A
LEU
122
n
122
LEU
122
A
ASP
123
n
123
ASP
123
A
LYS
124
n
124
LYS
124
A
PHE
125
n
125
PHE
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
GLU
128
n
128
GLU
128
A
HIS
129
n
129
HIS
129
A
THR
130
n
130
THR
130
A
ILE
131
n
131
ILE
131
A
PHE
132
n
132
PHE
132
A
ALA
133
n
133
ALA
133
A
SER
134
n
134
SER
134
A
ASN
135
n
135
ASN
135
A
THR
136
n
136
THR
136
A
SER
137
n
137
SER
137
A
SER
138
n
138
SER
138
A
LEU
139
n
139
LEU
139
A
GLN
140
n
140
GLN
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
SER
143
n
143
SER
143
A
ILE
144
n
144
ILE
144
A
ALA
145
n
145
ALA
145
A
ASN
146
n
146
ASN
146
A
ALA
147
n
147
ALA
147
A
THR
148
n
148
THR
148
A
THR
149
n
149
THR
149
A
ARG
150
n
150
ARG
150
A
GLN
151
n
151
GLN
151
A
ASP
152
n
152
ASP
152
A
ARG
153
n
153
ARG
153
A
PHE
154
n
154
PHE
154
A
ALA
155
n
155
ALA
155
A
GLY
156
n
156
GLY
156
A
LEU
157
n
157
LEU
157
A
HIS
158
n
158
HIS
158
A
PHE
159
n
159
PHE
159
A
PHE
160
n
160
PHE
160
A
ASN
161
n
161
ASN
161
A
PRO
162
n
162
PRO
162
A
VAL
163
n
163
VAL
163
A
PRO
164
n
164
PRO
164
A
VAL
165
n
165
VAL
165
A
MET
166
n
166
MET
166
A
LYS
167
n
167
LYS
167
A
LEU
168
n
168
LEU
168
A
VAL
169
n
169
VAL
169
A
GLU
170
n
170
GLU
170
A
VAL
171
n
171
VAL
171
A
ILE
172
n
172
ILE
172
A
LYS
173
n
173
LYS
173
A
THR
174
n
174
THR
174
A
PRO
175
n
175
PRO
175
A
MET
176
n
176
MET
176
A
THR
177
n
177
THR
177
A
SER
178
n
178
SER
178
A
GLN
179
n
179
GLN
179
A
LYS
180
n
180
LYS
180
A
THR
181
n
181
THR
181
A
PHE
182
n
182
PHE
182
A
GLU
183
n
183
GLU
183
A
SER
184
n
184
SER
184
A
LEU
185
n
185
LEU
185
A
VAL
186
n
186
VAL
186
A
ASP
187
n
187
ASP
187
A
PHE
188
n
188
PHE
188
A
SER
189
n
189
SER
189
A
LYS
190
n
190
LYS
190
A
ALA
191
n
191
ALA
191
A
LEU
192
n
192
LEU
192
A
GLY
193
n
193
GLY
193
A
LYS
194
n
194
LYS
194
A
HIS
195
n
195
HIS
195
A
PRO
196
n
196
PRO
196
A
VAL
197
n
197
VAL
197
A
SER
198
n
198
SER
198
A
CYS
199
n
199
CYS
199
A
LYS
200
n
200
LYS
200
A
ASP
201
n
201
ASP
201
A
THR
202
n
202
THR
202
A
PRO
203
n
203
PRO
203
A
GLY
204
n
204
GLY
204
A
PHE
205
n
205
PHE
205
A
ILE
206
n
206
ILE
206
A
VAL
207
n
207
VAL
207
A
ASN
208
n
208
ASN
208
A
ARG
209
n
209
ARG
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
VAL
212
n
212
VAL
212
A
PRO
213
n
213
PRO
213
A
TYR
214
n
214
TYR
214
A
LEU
215
n
215
LEU
215
A
MET
216
n
216
MET
216
A
GLU
217
n
217
GLU
217
A
ALA
218
n
218
ALA
218
A
ILE
219
n
219
ILE
219
A
ARG
220
n
220
ARG
220
A
LEU
221
n
221
LEU
221
A
TYR
222
n
222
TYR
222
A
GLU
223
n
223
GLU
223
A
ARG
224
n
224
ARG
224
A
GLY
225
n
225
GLY
225
A
ASP
226
n
226
ASP
226
A
ALA
227
n
227
ALA
227
A
SER
228
n
228
SER
228
A
LYS
229
n
229
LYS
229
A
GLU
230
n
230
GLU
230
A
ASP
231
n
231
ASP
231
A
ILE
232
n
232
ILE
232
A
ASP
233
n
233
ASP
233
A
THR
234
n
234
THR
234
A
ALA
235
n
235
ALA
235
A
MET
236
n
236
MET
236
A
LYS
237
n
237
LYS
237
A
LEU
238
n
238
LEU
238
A
GLY
239
n
239
GLY
239
A
ALA
240
n
240
ALA
240
A
GLY
241
n
241
GLY
241
A
TYR
242
n
242
TYR
242
A
PRO
243
n
243
PRO
243
A
MET
244
n
244
MET
244
A
GLY
245
n
245
GLY
245
A
PRO
246
n
246
PRO
246
A
PHE
247
n
247
PHE
247
A
GLU
248
n
248
GLU
248
A
LEU
249
n
249
LEU
249
A
LEU
250
n
250
LEU
250
A
ASP
251
n
251
ASP
251
A
TYR
252
n
252
TYR
252
A
VAL
253
n
253
VAL
253
A
GLY
254
n
254
GLY
254
A
LEU
255
n
255
LEU
255
A
ASP
256
n
256
ASP
256
A
THR
257
n
257
THR
257
A
THR
258
n
258
THR
258
A
LYS
259
n
259
LYS
259
A
PHE
260
n
260
PHE
260
A
ILE
261
n
261
ILE
261
A
VAL
262
n
262
VAL
262
A
ASP
263
n
263
ASP
263
A
GLY
264
n
264
GLY
264
A
TRP
265
n
265
TRP
265
A
HIS
266
n
266
HIS
266
A
GLU
267
n
267
GLU
267
A
MET
268
n
268
MET
268
A
ASP
269
n
269
ASP
269
A
ALA
270
n
270
ALA
270
A
GLU
271
n
271
GLU
271
A
ASN
272
n
272
ASN
272
A
PRO
273
n
273
PRO
273
A
LEU
274
n
274
LEU
274
A
HIS
275
n
275
HIS
275
A
GLN
276
n
276
GLN
276
A
PRO
277
n
277
PRO
277
A
SER
278
n
278
SER
278
A
PRO
279
n
279
PRO
279
A
SER
280
n
280
SER
280
A
LEU
281
n
281
LEU
281
A
ASN
282
n
282
ASN
282
A
LYS
283
n
283
LYS
283
A
LEU
284
n
284
LEU
284
A
VAL
285
n
285
VAL
285
A
ALA
286
n
286
ALA
286
A
GLU
287
n
287
GLU
287
A
ASN
288
n
288
ASN
288
A
LYS
289
n
289
LYS
289
A
PHE
290
n
290
PHE
290
A
GLY
291
n
291
GLY
291
A
LYS
292
n
292
LYS
292
A
LYS
293
n
293
LYS
293
A
THR
294
n
294
THR
294
A
GLY
295
n
295
GLY
295
A
GLU
296
n
296
GLU
296
A
GLY
297
n
297
GLY
297
A
PHE
298
n
298
PHE
298
A
TYR
299
n
299
TYR
299
A
LYS
300
n
300
LYS
300
A
TYR
301
n
301
TYR
301
A
LYS
302
n
302
LYS
302
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
LYS
12
n
12
LYS
12
B
ILE
13
n
13
ILE
13
B
ILE
14
n
14
ILE
14
B
VAL
15
n
15
VAL
15
B
LYS
16
n
16
LYS
16
B
HIS
17
n
17
HIS
17
B
VAL
18
n
18
VAL
18
B
THR
19
n
19
THR
19
B
VAL
20
n
20
VAL
20
B
ILE
21
n
21
ILE
21
B
GLY
22
n
22
GLY
22
B
GLY
23
n
23
GLY
23
B
GLY
24
n
24
GLY
24
B
LEU
25
n
25
LEU
25
B
MET
26
n
26
MET
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
GLY
29
n
29
GLY
29
B
ILE
30
n
30
ILE
30
B
ALA
31
n
31
ALA
31
B
GLN
32
n
32
GLN
32
B
VAL
33
n
33
VAL
33
B
ALA
34
n
34
ALA
34
B
ALA
35
n
35
ALA
35
B
ALA
36
n
36
ALA
36
B
THR
37
n
37
THR
37
B
GLY
38
n
38
GLY
38
B
HIS
39
n
39
HIS
39
B
THR
40
n
40
THR
40
B
VAL
41
n
41
VAL
41
B
VAL
42
n
42
VAL
42
B
LEU
43
n
43
LEU
43
B
VAL
44
n
44
VAL
44
B
ASP
45
n
45
ASP
45
B
GLN
46
n
46
GLN
46
B
THR
47
n
47
THR
47
B
GLU
48
n
48
GLU
48
B
ASP
49
n
49
ASP
49
B
ILE
50
n
50
ILE
50
B
LEU
51
n
51
LEU
51
B
ALA
52
n
52
ALA
52
B
LYS
53
n
53
LYS
53
B
SER
54
n
54
SER
54
B
LYS
55
n
55
LYS
55
B
LYS
56
n
56
LYS
56
B
GLY
57
n
57
GLY
57
B
ILE
58
n
58
ILE
58
B
GLU
59
n
59
GLU
59
B
GLU
60
n
60
GLU
60
B
SER
61
n
61
SER
61
B
LEU
62
n
62
LEU
62
B
ARG
63
n
63
ARG
63
B
LYS
64
n
64
LYS
64
B
VAL
65
n
65
VAL
65
B
ALA
66
n
66
ALA
66
B
LYS
67
n
67
LYS
67
B
LYS
68
n
68
LYS
68
B
LYS
69
n
69
LYS
69
B
PHE
70
n
70
PHE
70
B
ALA
71
n
71
ALA
71
B
GLU
72
n
72
GLU
72
B
ASN
73
n
73
ASN
73
B
PRO
74
n
74
PRO
74
B
LYS
75
n
75
LYS
75
B
ALA
76
n
76
ALA
76
B
GLY
77
n
77
GLY
77
B
ASP
78
n
78
ASP
78
B
GLU
79
n
79
GLU
79
B
PHE
80
n
80
PHE
80
B
VAL
81
n
81
VAL
81
B
GLU
82
n
82
GLU
82
B
LYS
83
n
83
LYS
83
B
THR
84
n
84
THR
84
B
LEU
85
n
85
LEU
85
B
SER
86
n
86
SER
86
B
THR
87
n
87
THR
87
B
ILE
88
n
88
ILE
88
B
ALA
89
n
89
ALA
89
B
THR
90
n
90
THR
90
B
SER
91
n
91
SER
91
B
THR
92
n
92
THR
92
B
ASP
93
n
93
ASP
93
B
ALA
94
n
94
ALA
94
B
ALA
95
n
95
ALA
95
B
SER
96
n
96
SER
96
B
VAL
97
n
97
VAL
97
B
VAL
98
n
98
VAL
98
B
HIS
99
n
99
HIS
99
B
SER
100
n
100
SER
100
B
THR
101
n
101
THR
101
B
ASP
102
n
102
ASP
102
B
LEU
103
n
103
LEU
103
B
VAL
104
n
104
VAL
104
B
VAL
105
n
105
VAL
105
B
GLU
106
n
106
GLU
106
B
ALA
107
n
107
ALA
107
B
ILE
108
n
108
ILE
108
B
VAL
109
n
109
VAL
109
B
GLN
110
n
110
GLN
110
B
ASN
111
n
111
ASN
111
B
LEU
112
n
112
LEU
112
B
LYS
113
n
113
LYS
113
B
VAL
114
n
114
VAL
114
B
LYS
115
n
115
LYS
115
B
ASN
116
n
116
ASN
116
B
GLU
117
n
117
GLU
117
B
LEU
118
n
118
LEU
118
B
PHE
119
n
119
PHE
119
B
LYS
120
n
120
LYS
120
B
ARG
121
n
121
ARG
121
B
LEU
122
n
122
LEU
122
B
ASP
123
n
123
ASP
123
B
LYS
124
n
124
LYS
124
B
PHE
125
n
125
PHE
125
B
ALA
126
n
126
ALA
126
B
ALA
127
n
127
ALA
127
B
GLU
128
n
128
GLU
128
B
HIS
129
n
129
HIS
129
B
THR
130
n
130
THR
130
B
ILE
131
n
131
ILE
131
B
PHE
132
n
132
PHE
132
B
ALA
133
n
133
ALA
133
B
SER
134
n
134
SER
134
B
ASN
135
n
135
ASN
135
B
THR
136
n
136
THR
136
B
SER
137
n
137
SER
137
B
SER
138
n
138
SER
138
B
LEU
139
n
139
LEU
139
B
GLN
140
n
140
GLN
140
B
ILE
141
n
141
ILE
141
B
THR
142
n
142
THR
142
B
SER
143
n
143
SER
143
B
ILE
144
n
144
ILE
144
B
ALA
145
n
145
ALA
145
B
ASN
146
n
146
ASN
146
B
ALA
147
n
147
ALA
147
B
THR
148
n
148
THR
148
B
THR
149
n
149
THR
149
B
ARG
150
n
150
ARG
150
B
GLN
151
n
151
GLN
151
B
ASP
152
n
152
ASP
152
B
ARG
153
n
153
ARG
153
B
PHE
154
n
154
PHE
154
B
ALA
155
n
155
ALA
155
B
GLY
156
n
156
GLY
156
B
LEU
157
n
157
LEU
157
B
HIS
158
n
158
HIS
158
B
PHE
159
n
159
PHE
159
B
PHE
160
n
160
PHE
160
B
ASN
161
n
161
ASN
161
B
PRO
162
n
162
PRO
162
B
VAL
163
n
163
VAL
163
B
PRO
164
n
164
PRO
164
B
VAL
165
n
165
VAL
165
B
MET
166
n
166
MET
166
B
LYS
167
n
167
LYS
167
B
LEU
168
n
168
LEU
168
B
VAL
169
n
169
VAL
169
B
GLU
170
n
170
GLU
170
B
VAL
171
n
171
VAL
171
B
ILE
172
n
172
ILE
172
B
LYS
173
n
173
LYS
173
B
THR
174
n
174
THR
174
B
PRO
175
n
175
PRO
175
B
MET
176
n
176
MET
176
B
THR
177
n
177
THR
177
B
SER
178
n
178
SER
178
B
GLN
179
n
179
GLN
179
B
LYS
180
n
180
LYS
180
B
THR
181
n
181
THR
181
B
PHE
182
n
182
PHE
182
B
GLU
183
n
183
GLU
183
B
SER
184
n
184
SER
184
B
LEU
185
n
185
LEU
185
B
VAL
186
n
186
VAL
186
B
ASP
187
n
187
ASP
187
B
PHE
188
n
188
PHE
188
B
SER
189
n
189
SER
189
B
LYS
190
n
190
LYS
190
B
ALA
191
n
191
ALA
191
B
LEU
192
n
192
LEU
192
B
GLY
193
n
193
GLY
193
B
LYS
194
n
194
LYS
194
B
HIS
195
n
195
HIS
195
B
PRO
196
n
196
PRO
196
B
VAL
197
n
197
VAL
197
B
SER
198
n
198
SER
198
B
CYS
199
n
199
CYS
199
B
LYS
200
n
200
LYS
200
B
ASP
201
n
201
ASP
201
B
THR
202
n
202
THR
202
B
PRO
203
n
203
PRO
203
B
GLY
204
n
204
GLY
204
B
PHE
205
n
205
PHE
205
B
ILE
206
n
206
ILE
206
B
VAL
207
n
207
VAL
207
B
ASN
208
n
208
ASN
208
B
ARG
209
n
209
ARG
209
B
LEU
210
n
210
LEU
210
B
LEU
211
n
211
LEU
211
B
VAL
212
n
212
VAL
212
B
PRO
213
n
213
PRO
213
B
TYR
214
n
214
TYR
214
B
LEU
215
n
215
LEU
215
B
MET
216
n
216
MET
216
B
GLU
217
n
217
GLU
217
B
ALA
218
n
218
ALA
218
B
ILE
219
n
219
ILE
219
B
ARG
220
n
220
ARG
220
B
LEU
221
n
221
LEU
221
B
TYR
222
n
222
TYR
222
B
GLU
223
n
223
GLU
223
B
ARG
224
n
224
ARG
224
B
GLY
225
n
225
GLY
225
B
ASP
226
n
226
ASP
226
B
ALA
227
n
227
ALA
227
B
SER
228
n
228
SER
228
B
LYS
229
n
229
LYS
229
B
GLU
230
n
230
GLU
230
B
ASP
231
n
231
ASP
231
B
ILE
232
n
232
ILE
232
B
ASP
233
n
233
ASP
233
B
THR
234
n
234
THR
234
B
ALA
235
n
235
ALA
235
B
MET
236
n
236
MET
236
B
LYS
237
n
237
LYS
237
B
LEU
238
n
238
LEU
238
B
GLY
239
n
239
GLY
239
B
ALA
240
n
240
ALA
240
B
GLY
241
n
241
GLY
241
B
TYR
242
n
242
TYR
242
B
PRO
243
n
243
PRO
243
B
MET
244
n
244
MET
244
B
GLY
245
n
245
GLY
245
B
PRO
246
n
246
PRO
246
B
PHE
247
n
247
PHE
247
B
GLU
248
n
248
GLU
248
B
LEU
249
n
249
LEU
249
B
LEU
250
n
250
LEU
250
B
ASP
251
n
251
ASP
251
B
TYR
252
n
252
TYR
252
B
VAL
253
n
253
VAL
253
B
GLY
254
n
254
GLY
254
B
LEU
255
n
255
LEU
255
B
ASP
256
n
256
ASP
256
B
THR
257
n
257
THR
257
B
THR
258
n
258
THR
258
B
LYS
259
n
259
LYS
259
B
PHE
260
n
260
PHE
260
B
ILE
261
n
261
ILE
261
B
VAL
262
n
262
VAL
262
B
ASP
263
n
263
ASP
263
B
GLY
264
n
264
GLY
264
B
TRP
265
n
265
TRP
265
B
HIS
266
n
266
HIS
266
B
GLU
267
n
267
GLU
267
B
MET
268
n
268
MET
268
B
ASP
269
n
269
ASP
269
B
ALA
270
n
270
ALA
270
B
GLU
271
n
271
GLU
271
B
ASN
272
n
272
ASN
272
B
PRO
273
n
273
PRO
273
B
LEU
274
n
274
LEU
274
B
HIS
275
n
275
HIS
275
B
GLN
276
n
276
GLN
276
B
PRO
277
n
277
PRO
277
B
SER
278
n
278
SER
278
B
PRO
279
n
279
PRO
279
B
SER
280
n
280
SER
280
B
LEU
281
n
281
LEU
281
B
ASN
282
n
282
ASN
282
B
LYS
283
n
283
LYS
283
B
LEU
284
n
284
LEU
284
B
VAL
285
n
285
VAL
285
B
ALA
286
n
286
ALA
286
B
GLU
287
n
287
GLU
287
B
ASN
288
n
288
ASN
288
B
LYS
289
n
289
LYS
289
B
PHE
290
n
290
PHE
290
B
GLY
291
n
291
GLY
291
B
LYS
292
n
292
LYS
292
B
LYS
293
n
293
LYS
293
B
THR
294
n
294
THR
294
B
GLY
295
n
295
GLY
295
B
GLU
296
n
296
GLU
296
B
GLY
297
n
297
GLY
297
B
PHE
298
n
298
PHE
298
B
TYR
299
n
299
TYR
299
B
LYS
300
n
300
LYS
300
B
TYR
301
n
301
TYR
301
B
LYS
302
n
302
LYS
302
B
author_and_software_defined_assembly
PISA
2
dimeric
5400
-40
25110
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
89
A
O
ALA
89
A
N
LEU
43
A
N
LEU
43
A
O
THR
40
A
O
THR
40
A
N
VAL
18
A
N
VAL
18
A
N
THR
19
A
N
THR
19
A
O
LEU
103
A
O
LEU
103
A
N
VAL
104
A
N
VAL
104
A
O
ALA
133
A
O
ALA
133
A
N
PHE
132
A
N
PHE
132
A
O
ALA
155
A
O
ALA
155
A
N
HIS
158
A
N
HIS
158
A
O
GLU
170
A
O
GLU
170
A
N
VAL
171
A
N
VAL
171
A
O
VAL
197
A
O
VAL
197
B
O
ALA
89
B
O
ALA
89
B
N
VAL
41
B
N
VAL
41
B
O
VAL
44
B
O
VAL
44
B
N
VAL
20
B
N
VAL
20
B
N
THR
19
B
N
THR
19
B
O
LEU
103
B
O
LEU
103
B
N
GLU
106
B
N
GLU
106
B
O
ALA
133
B
O
ALA
133
B
N
PHE
132
B
N
PHE
132
B
O
ALA
155
B
O
ALA
155
B
N
HIS
158
B
N
HIS
158
B
O
GLU
170
B
O
GLU
170
B
N
VAL
171
B
N
VAL
171
B
O
VAL
197
B
O
VAL
197
1
A
SER
1
A
SER
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
ALA
6
A
ALA
6
1
Y
1
A
SER
7
A
SER
7
1
Y
1
A
ALA
8
A
ALA
8
1
Y
1
A
SER
9
A
SER
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
LYS
11
A
LYS
11
1
Y
1
B
SER
1
B
SER
1
1
Y
1
B
SER
2
B
SER
2
1
Y
1
B
SER
3
B
SER
3
1
Y
1
B
SER
4
B
SER
4
1
Y
1
B
THR
5
B
THR
5
1
Y
1
B
ALA
6
B
ALA
6
1
Y
1
B
SER
7
B
SER
7
1
Y
1
B
ALA
8
B
ALA
8
1
Y
1
B
SER
9
B
SER
9
1
Y
1
B
ALA
10
B
ALA
10
1
Y
1
B
LYS
11
B
LYS
11
1
Y
1
A
LYS
68
-89.81
31.90
1
A
LYS
69
-155.41
-46.36
1
A
ASN
73
-175.18
73.05
1
A
ILE
88
-108.08
74.46
1
A
ILE
108
-113.51
-165.15
1
A
GLN
110
-63.55
66.15
1
A
ALA
126
-49.35
156.68
1
A
THR
130
-36.15
131.38
1
A
PHE
205
53.02
-132.99
1
A
ILE
206
-87.92
-77.53
1
A
ASP
269
-161.66
50.07
1
A
ALA
270
-36.11
-32.42
1
B
ASN
73
-156.87
69.74
1
B
SER
100
-140.99
31.36
1
B
VAL
109
-38.16
135.59
1
B
GLN
110
-72.09
46.59
1
B
PHE
205
54.62
-104.81
1
B
ILE
206
-122.04
-64.75
1
B
LYS
289
-110.03
79.99
1
B
LYS
293
-69.56
40.37
1
B
THR
294
-165.98
-25.75
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
NAD_MOD.PARAM
NAD.TOP
CAA_IDEAL_50.PARAM
CAA.TOP
32.8
0.00
0.00
0.00
0.00
0.00
0.00
0.274
0.008
0.21
0.211
2.50
26.70
1236
25678
25678
4.8
98.9
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
3HAD
Engh & Huber
FLAT MODEL
24.1103
0.32982
0.41
0.30
5.0
0.43
0.32
2.50
26.70
159
4733
88
0
4486
0.007
1.3
21.4
0.84
1.14
1.50
1.95
2.00
1.66
2.00
2.58
2.50
0.332
0.023
0.272
2.66
204
4009
4009
6
4.8
99.6
27.2
2.5
28
1LSJ
25976
25717
0
0
0.079
1
13.8
4.77
99.0
0.231
2.50
2.59
7.2
2527
4.75
99.6
data collection
Crystal
Clear / d*trek
data reduction
Crystal
Clear / d*trek
refinement
CNS
data reduction
CrystalClear
D*TREK (MSC/RIGAKU)
data scaling
CrystalClear
D*TREK (MSC/RIGAKU)
phasing
CNS
Crystal Structure of the E110Q Mutant of L-3-Hydroxyacyl-CoA Dehydrogenase in Complex with NAD
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
biologically relevant dimer contained within the asymmetric unit
A
GLY
24
A
GLY
24
HELX_P
A
THR
37
A
THR
37
1
1
14
A
THR
47
A
THR
47
HELX_P
A
LYS
68
A
LYS
68
1
2
22
A
ASN
73
A
ASN
73
HELX_P
A
THR
87
A
THR
87
1
3
15
A
ASP
93
A
ASP
93
HELX_P
A
THR
101
A
THR
101
5
4
9
A
ASN
111
A
ASN
111
HELX_P
A
ALA
126
A
ALA
126
1
5
16
A
GLN
140
A
GLN
140
HELX_P
A
ASN
146
A
ASN
146
1
6
7
A
ARG
150
A
ARG
150
HELX_P
A
ASP
152
A
ASP
152
5
7
3
A
SER
178
A
SER
178
HELX_P
A
LEU
192
A
LEU
192
1
8
15
A
ILE
206
A
ILE
206
HELX_P
A
ARG
224
A
ARG
224
1
9
19
A
SER
228
A
SER
228
HELX_P
A
GLY
241
A
GLY
241
1
10
14
A
GLY
245
A
GLY
245
HELX_P
A
GLY
254
A
GLY
254
1
11
10
A
GLY
254
A
GLY
254
HELX_P
A
MET
268
A
MET
268
1
12
15
A
ASN
272
A
ASN
272
HELX_P
A
GLN
276
A
GLN
276
5
13
5
A
SER
278
A
SER
278
HELX_P
A
GLU
287
A
GLU
287
1
14
10
A
GLY
291
A
GLY
291
HELX_P
A
GLY
295
A
GLY
295
5
15
5
B
GLY
24
B
GLY
24
HELX_P
B
THR
37
B
THR
37
1
16
14
B
THR
47
B
THR
47
HELX_P
B
PHE
70
B
PHE
70
1
17
24
B
ASN
73
B
ASN
73
HELX_P
B
SER
86
B
SER
86
1
18
14
B
ASP
93
B
ASP
93
HELX_P
B
VAL
98
B
VAL
98
1
19
6
B
HIS
99
B
HIS
99
HELX_P
B
THR
101
B
THR
101
5
20
3
B
ASN
111
B
ASN
111
HELX_P
B
LYS
124
B
LYS
124
1
21
14
B
GLN
140
B
GLN
140
HELX_P
B
ASN
146
B
ASN
146
1
22
7
B
ARG
150
B
ARG
150
HELX_P
B
ASP
152
B
ASP
152
5
23
3
B
SER
178
B
SER
178
HELX_P
B
LEU
192
B
LEU
192
1
24
15
B
ILE
206
B
ILE
206
HELX_P
B
ARG
224
B
ARG
224
1
25
19
B
SER
228
B
SER
228
HELX_P
B
GLY
241
B
GLY
241
1
26
14
B
GLY
245
B
GLY
245
HELX_P
B
GLY
254
B
GLY
254
1
27
10
B
GLY
254
B
GLY
254
HELX_P
B
ASP
269
B
ASP
269
1
28
16
B
ASN
272
B
ASN
272
HELX_P
B
GLN
276
B
GLN
276
5
29
5
B
SER
278
B
SER
278
HELX_P
B
GLU
287
B
GLU
287
1
30
10
OXIDOREDUCTASE
Rossmann fold, OXIDOREDUCTASE
A
ASN
161
A
ASN
161
1
A
PRO
162
A
PRO
162
-0.46
B
ASN
161
B
ASN
161
1
B
PRO
162
B
PRO
162
-0.26
HCDH_HUMAN
UNP
1
7
Q16836
SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEF
VEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF
NPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGA
GYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK
7
308
1LSJ
1
302
Q16836
A
1
1
302
7
308
1LSJ
1
302
Q16836
B
1
1
302
1
GLU
engineered mutation
GLN
110
1LSJ
A
Q16836
UNP
116
110
2
GLU
engineered mutation
GLN
110
1LSJ
B
Q16836
UNP
116
110
8
8
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
ILE
88
A
ILE
88
A
SER
91
A
SER
91
A
THR
40
A
THR
40
A
VAL
44
A
VAL
44
A
HIS
17
A
HIS
17
A
ILE
21
A
ILE
21
A
LEU
103
A
LEU
103
A
GLU
106
A
GLU
106
A
ILE
131
A
ILE
131
A
SER
134
A
SER
134
A
PHE
154
A
PHE
154
A
PHE
159
A
PHE
159
A
LEU
168
A
LEU
168
A
LYS
173
A
LYS
173
A
HIS
195
A
HIS
195
A
LYS
200
A
LYS
200
B
ILE
88
B
ILE
88
B
SER
91
B
SER
91
B
THR
40
B
THR
40
B
VAL
44
B
VAL
44
B
HIS
17
B
HIS
17
B
ILE
21
B
ILE
21
B
LEU
103
B
LEU
103
B
GLU
106
B
GLU
106
B
ILE
131
B
ILE
131
B
SER
134
B
SER
134
B
PHE
154
B
PHE
154
B
HIS
158
B
HIS
158
B
LEU
168
B
LEU
168
B
LYS
173
B
LYS
173
B
HIS
195
B
HIS
195
B
LYS
200
B
LYS
200
BINDING SITE FOR RESIDUE NAD A 350
A
NAD
350
Software
13
BINDING SITE FOR RESIDUE NAD B 750
B
NAD
750
Software
13
A
GLY
24
A
GLY
24
13
1_555
A
LEU
25
A
LEU
25
13
1_555
A
MET
26
A
MET
26
13
1_555
A
ASP
45
A
ASP
45
13
1_555
A
GLN
46
A
GLN
46
13
1_555
A
ALA
107
A
ALA
107
13
1_555
A
ILE
108
A
ILE
108
13
1_555
A
GLN
110
A
GLN
110
13
1_555
A
ASN
135
A
ASN
135
13
1_555
A
SER
137
A
SER
137
13
1_555
A
ASN
161
A
ASN
161
13
1_555
A
HOH
888
E
HOH
13
1_555
A
HOH
945
E
HOH
13
1_555
B
GLY
24
B
GLY
24
13
1_555
B
LEU
25
B
LEU
25
13
1_555
B
MET
26
B
MET
26
13
1_555
B
ASP
45
B
ASP
45
13
1_555
B
GLN
46
B
GLN
46
13
1_555
B
ALA
107
B
ALA
107
13
1_555
B
ILE
108
B
ILE
108
13
1_555
B
VAL
109
B
VAL
109
13
1_555
B
GLN
110
B
GLN
110
13
1_555
B
LYS
115
B
LYS
115
13
1_555
B
ASN
135
B
ASN
135
13
1_555
B
SER
137
B
SER
137
13
1_555
B
HOH
841
F
HOH
13
1_555
19
P 21 21 21