0.013041
0.007529
0.000000
0.000000
0.015059
0.000000
0.000000
0.000000
0.018362
0.000000
0.000000
0.000000
Karlsen, S.
Hough, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
76.680
76.680
54.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
51
354
367
10.1107/S0907444994010929
15299303
Refined crystal structure of lysozyme from the rainbow trout (Oncorhynchus mykiss).
1995
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
173
269
Purification and Characterization of Two Lysozymes from Rainbow Trout (Salmo Gairdneri)
1988
10.2210/pdb1lmn/pdb
pdb_00001lmn
0.866025
0.500000
0.000000
-0.500000
0.866025
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1
x-ray
1
1.0
14303.068
RAINBOW TROUT LYSOZYME
3.2.1.17
1
man
polymer
18.015
water
127
nat
water
no
no
KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRC
SQLLTDDLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV
KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRC
SQLLTDDLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
rainbow trout
Oncorhynchus
sample
8022
Oncorhynchus mykiss
3.23
61.93
atom_site
atom_sites
database_2
database_PDB_matrix
pdbx_database_remark
pdbx_validate_rmsd_angle
struct_conn
struct_ref_seq_dif
repository
Initial release
Coordinates and associated ncs operations (if present) transformed into standard crystal frame
repository
Remediation
Version format compliance
Advisory
Version format compliance
Advisory
Atomic model
Data collection
Database references
Derived calculations
Other
1
0
1995-02-07
1
1
2008-03-24
1
2
2011-07-13
2
0
2023-07-26
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_sites.fract_transf_matrix[1][1]
_atom_sites.fract_transf_matrix[1][2]
_atom_sites.fract_transf_matrix[2][1]
_atom_sites.fract_transf_matrix[2][2]
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_database_PDB_matrix.origx[1][1]
_database_PDB_matrix.origx[1][2]
_database_PDB_matrix.origx[2][1]
_database_PDB_matrix.origx[2][2]
_struct_conn.pdbx_dist_value
_struct_ref_seq_dif.details
Y
BNL
1994-10-19
REL
REL
HOH
water
HOH
130
2
HOH
HOH
130
A
HOH
131
2
HOH
HOH
131
A
HOH
132
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
135
2
HOH
HOH
135
A
HOH
136
2
HOH
HOH
136
A
HOH
137
2
HOH
HOH
137
A
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
149
2
HOH
HOH
149
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
152
2
HOH
HOH
152
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
177
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
181
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
187
2
HOH
HOH
187
A
HOH
188
2
HOH
HOH
188
A
HOH
189
2
HOH
HOH
189
A
HOH
190
2
HOH
HOH
190
A
HOH
191
2
HOH
HOH
191
A
HOH
192
2
HOH
HOH
192
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
196
2
HOH
HOH
196
A
HOH
197
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
199
2
HOH
HOH
199
A
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
204
2
HOH
HOH
204
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
215
2
HOH
HOH
215
A
HOH
216
2
HOH
HOH
216
A
HOH
217
2
HOH
HOH
217
A
HOH
218
2
HOH
HOH
218
A
HOH
219
2
HOH
HOH
219
A
HOH
220
2
HOH
HOH
220
A
HOH
221
2
HOH
HOH
221
A
HOH
222
2
HOH
HOH
222
A
HOH
223
2
HOH
HOH
223
A
HOH
224
2
HOH
HOH
224
A
HOH
225
2
HOH
HOH
225
A
HOH
226
2
HOH
HOH
226
A
HOH
227
2
HOH
HOH
227
A
HOH
228
2
HOH
HOH
228
A
HOH
229
2
HOH
HOH
229
A
HOH
230
2
HOH
HOH
230
A
HOH
231
2
HOH
HOH
231
A
HOH
232
2
HOH
HOH
232
A
HOH
233
2
HOH
HOH
233
A
HOH
234
2
HOH
HOH
234
A
HOH
235
2
HOH
HOH
235
A
HOH
236
2
HOH
HOH
236
A
HOH
237
2
HOH
HOH
237
A
HOH
238
2
HOH
HOH
238
A
HOH
239
2
HOH
HOH
239
A
HOH
240
2
HOH
HOH
240
A
HOH
241
2
HOH
HOH
241
A
HOH
242
2
HOH
HOH
242
A
HOH
243
2
HOH
HOH
243
A
HOH
244
2
HOH
HOH
244
A
HOH
245
2
HOH
HOH
245
A
HOH
246
2
HOH
HOH
246
A
HOH
247
2
HOH
HOH
247
A
HOH
248
2
HOH
HOH
248
A
HOH
249
2
HOH
HOH
249
A
HOH
250
2
HOH
HOH
250
A
HOH
251
2
HOH
HOH
251
A
HOH
252
2
HOH
HOH
252
A
HOH
253
2
HOH
HOH
253
A
HOH
254
2
HOH
HOH
254
A
HOH
255
2
HOH
HOH
255
A
HOH
256
2
HOH
HOH
256
A
HOH
295
2
HOH
HOH
295
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
TYR
3
n
3
TYR
3
A
ASP
4
n
4
ASP
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ALA
14
n
14
ALA
14
A
SER
15
n
15
SER
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ALA
21
n
21
ALA
21
A
GLY
22
n
22
GLY
22
A
ASN
23
n
23
ASN
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
PRO
26
n
26
PRO
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
SER
32
n
32
SER
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
SER
37
n
37
SER
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
PHE
56
n
56
PHE
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TYR
62
n
62
TYR
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASP
65
n
65
ASP
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
ALA
72
n
72
ALA
72
A
LYS
73
n
73
LYS
73
A
ASN
74
n
74
ASN
74
A
VAL
75
n
75
VAL
75
A
CYS
76
n
76
CYS
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
ARG
79
n
79
ARG
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
GLN
82
n
82
GLN
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
THR
85
n
85
THR
85
A
ASP
86
n
86
ASP
86
A
ASP
87
n
87
ASP
87
A
LEU
88
n
88
LEU
88
A
THR
89
n
89
THR
89
A
VAL
90
n
90
VAL
90
A
ALA
91
n
91
ALA
91
A
ILE
92
n
92
ILE
92
A
ARG
93
n
93
ARG
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
ARG
97
n
97
ARG
97
A
VAL
98
n
98
VAL
98
A
VAL
99
n
99
VAL
99
A
LEU
100
n
100
LEU
100
A
ASP
101
n
101
ASP
101
A
PRO
102
n
102
PRO
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
ILE
105
n
105
ILE
105
A
GLY
106
n
106
GLY
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
LEU
113
n
113
LEU
113
A
HIS
114
n
114
HIS
114
A
CYS
115
n
115
CYS
115
A
GLN
116
n
116
GLN
116
A
ASN
117
n
117
ASN
117
A
GLN
118
n
118
GLN
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
ARG
121
n
121
ARG
121
A
SER
122
n
122
SER
122
A
TYR
123
n
123
TYR
123
A
VAL
124
n
124
VAL
124
A
ALA
125
n
125
ALA
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
GLY
128
n
128
GLY
128
A
VAL
129
n
129
VAL
129
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
44
A
O
ASN
44
A
N
ASP
52
A
N
ASP
52
1
A
ARG
45
0.154
SIDE CHAIN
1
A
ARG
61
0.238
SIDE CHAIN
1
A
ARG
93
0.215
SIDE CHAIN
1
-6.33
0.90
118.30
111.97
A
A
A
CB
CG
OD1
ASP
ASP
ASP
4
4
4
N
1
7.98
0.90
118.30
126.28
A
A
A
CB
CG
OD2
ASP
ASP
ASP
4
4
4
N
1
7.96
0.90
118.30
126.26
A
A
A
CB
CG
OD1
ASP
ASP
ASP
18
18
18
N
1
20.54
2.30
115.30
135.84
A
A
A
CA
CB
CG
LEU
LEU
LEU
31
31
31
N
1
-5.16
0.50
120.30
115.14
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
45
45
45
N
1
-6.40
0.90
118.30
111.90
A
A
A
CB
CG
OD2
ASP
ASP
ASP
48
48
48
N
1
7.66
0.90
118.30
125.96
A
A
A
CB
CG
OD1
ASP
ASP
ASP
52
52
52
N
1
-4.28
0.50
120.30
116.02
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
N
1
4.44
0.50
120.30
124.74
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
68
68
68
N
1
4.83
0.50
120.30
125.13
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
79
79
79
N
1
-4.77
0.50
120.30
115.53
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
79
79
79
N
1
6.32
0.90
118.30
124.62
A
A
A
CB
CG
OD1
ASP
ASP
ASP
86
86
86
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
7.17
0.50
120.30
127.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
97
97
97
N
1
-3.50
0.50
120.30
116.80
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
97
97
97
N
1
-13.23
2.10
120.10
106.87
A
A
A
CA
C
O
VAL
VAL
VAL
129
129
129
N
1
A
A
O
O
HOH
HOH
176
176
1.26
1_555
4_556
1
A
A
O
O
HOH
HOH
143
143
1.46
1_555
4_556
1
A
A
CD1
CD1
LEU
LEU
113
113
1.76
1_555
5_675
24.4
THE STRUCTURE WAS SOLVED BY MOLECULAR REPLACEMENT METHODS
USING THE MERLOT PACKAGE (FITZGERALD, P. (1988) J. APPL.
CRYST. 21, 273-278) AND THE REFINED MODEL OF THE HEN
EGG-WHITE LYSOZYME AS SEARCH MODEL (BROOKHAVEN PROTEIN
DATA BANK, ENTRY 1LZT, HODSON ET AL.,(1990), ACTA. CRYST.
B46, 52-62.
0.174
1.8
8.0
16305
1
3.0
1.8
8.0
127
1126
0
0
999
0.013
0.020
0.044
0.040
0.047
0.050
0.013
0.020
0.038
0.060
0.172
0.030
0.254
0.300
0.224
0.300
6.4
3.0
18.3
15.0
18.6
20.0
1LMN
16305
3.
1
91.2
phasing
MERLOT
refinement
PROLSQ
THE REFINED CRYSTAL STRUCTURE OF LYSOZYME FROM THE RAINBOW TROUT (ONCORHYNCHUS MYKISS)
1
N
N
2
N
N
A
ARG
5
A
ARG
5
HELX_P
A
ALA
14
A
ALA
14
1
1
10
A
TYR
20
A
TYR
20
HELX_P
A
GLY
22
A
GLY
22
5
2
3
A
LEU
25
A
LEU
25
HELX_P
A
SER
36
A
SER
36
1
3
12
A
CYS
80
A
CYS
80
HELX_P
A
LEU
83
A
LEU
83
5
4
4
A
THR
89
A
THR
89
HELX_P
A
LEU
100
A
LEU
100
1
5
12
A
GLY
104
A
GLY
104
HELX_P
A
ALA
107
A
ALA
107
5
6
4
A
VAL
109
A
VAL
109
HELX_P
A
HIS
114
A
HIS
114
1
7
6
A
ARG
121
A
ARG
121
HELX_P
A
VAL
124
A
VAL
124
1
8
4
disulf
2.009
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.024
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.012
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.004
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
HYDROLASE (O-GLYCOSYL)
HYDROLASE (O-GLYCOSYL)
LYSC2_ONCMY
UNP
1
1
P11941
MRAVVVLLLVAVASAKVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCD
DGRTPGAKNVCGIRCSQLLTADLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV
16
144
1LMN
1
129
P11941
A
1
1
129
1
ALA
conflict
ASP
86
1LMN
A
P11941
UNP
101
86
2
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
152
P 31 2 1