1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kigawa, T.
Endo, M.
Ito, Y.
Shirouzu, M.
Kikuchi, A.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
FEBS Lett.
FEBLAL
0165
0014-5793
441
413
418
10.1016/S0014-5793(98)01596-8
9891982
Solution structure of the Ras-binding domain of RGL.
1998
10.2210/pdb1ef5/pdb
pdb_00001ef5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11737.146
RGL
RAS-BINDING DOMAIN
1
man
polymer
no
no
SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP
DSANVFYAMNSQVNFDFILRKKN
SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP
DSANVFYAMNSQVNFDFILRKKN
A
trt001000187.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
DH5ALPHA
PGEX2T
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-02-23
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
Y
RCSB
Y
RCSB
2000-02-07
REL
REL
The structure was determined using triple-resonance NMR spectroscopy.
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHB
200mM
7.5
1
atm
298
K
the structures are based on a total of 1309 restraints, 1211 are NOE-derived distance constraints, 56 dihedral angle restraints, 42 distance restraints from hydrogen bonds. N-terminal residues 632-646 are not defined by NMR restraints and excluded from the coordinate file.
simulated annealing
minimized average structure
1.5mM RGL-RBD U-15N,13C; 50mM Tris-HCl; 5mM DTT; 10mM MgCl2; 200mM NaCl; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker, AG.
collection
UXNMR
Bruker, AG.
collection
XwinNMR
1.3
Boucher
processing
Azara
1.0
MSI, Inc.
data analysis
Felix
95
Brunger
structure solution
X-PLOR
3.1
Brunger
refinement
X-PLOR
3.1
600
Bruker
AMX
500
Bruker
DMX
n
1
632
A
n
2
633
A
n
3
634
A
n
4
635
A
n
5
636
A
n
6
637
A
n
7
638
A
n
8
639
A
n
9
640
A
n
10
641
A
n
11
642
A
n
12
643
A
n
13
644
A
n
14
645
A
n
15
646
A
GLU
647
n
16
GLU
647
A
ASP
648
n
17
ASP
648
A
THR
649
n
18
THR
649
A
CYS
650
n
19
CYS
650
A
ILE
651
n
20
ILE
651
A
ILE
652
n
21
ILE
652
A
ARG
653
n
22
ARG
653
A
ILE
654
n
23
ILE
654
A
SER
655
n
24
SER
655
A
VAL
656
n
25
VAL
656
A
GLU
657
n
26
GLU
657
A
ASP
658
n
27
ASP
658
A
ASN
659
n
28
ASN
659
A
ASN
660
n
29
ASN
660
A
GLY
661
n
30
GLY
661
A
ASN
662
n
31
ASN
662
A
MET
663
n
32
MET
663
A
TYR
664
n
33
TYR
664
A
LYS
665
n
34
LYS
665
A
SER
666
n
35
SER
666
A
ILE
667
n
36
ILE
667
A
MET
668
n
37
MET
668
A
LEU
669
n
38
LEU
669
A
THR
670
n
39
THR
670
A
SER
671
n
40
SER
671
A
GLN
672
n
41
GLN
672
A
ASP
673
n
42
ASP
673
A
LYS
674
n
43
LYS
674
A
THR
675
n
44
THR
675
A
PRO
676
n
45
PRO
676
A
ALA
677
n
46
ALA
677
A
VAL
678
n
47
VAL
678
A
ILE
679
n
48
ILE
679
A
GLN
680
n
49
GLN
680
A
ARG
681
n
50
ARG
681
A
ALA
682
n
51
ALA
682
A
MET
683
n
52
MET
683
A
SER
684
n
53
SER
684
A
LYS
685
n
54
LYS
685
A
HIS
686
n
55
HIS
686
A
ASN
687
n
56
ASN
687
A
LEU
688
n
57
LEU
688
A
GLU
689
n
58
GLU
689
A
SER
690
n
59
SER
690
A
ASP
691
n
60
ASP
691
A
PRO
692
n
61
PRO
692
A
ALA
693
n
62
ALA
693
A
GLU
694
n
63
GLU
694
A
GLU
695
n
64
GLU
695
A
TYR
696
n
65
TYR
696
A
GLU
697
n
66
GLU
697
A
LEU
698
n
67
LEU
698
A
VAL
699
n
68
VAL
699
A
GLN
700
n
69
GLN
700
A
VAL
701
n
70
VAL
701
A
ILE
702
n
71
ILE
702
A
SER
703
n
72
SER
703
A
GLU
704
n
73
GLU
704
A
ASP
705
n
74
ASP
705
A
LYS
706
n
75
LYS
706
A
GLU
707
n
76
GLU
707
A
LEU
708
n
77
LEU
708
A
VAL
709
n
78
VAL
709
A
ILE
710
n
79
ILE
710
A
PRO
711
n
80
PRO
711
A
ASP
712
n
81
ASP
712
A
SER
713
n
82
SER
713
A
ALA
714
n
83
ALA
714
A
ASN
715
n
84
ASN
715
A
VAL
716
n
85
VAL
716
A
PHE
717
n
86
PHE
717
A
TYR
718
n
87
TYR
718
A
ALA
719
n
88
ALA
719
A
MET
720
n
89
MET
720
A
ASN
721
n
90
ASN
721
A
SER
722
n
91
SER
722
A
GLN
723
n
92
GLN
723
A
VAL
724
n
93
VAL
724
A
ASN
725
n
94
ASN
725
A
PHE
726
n
95
PHE
726
A
ASP
727
n
96
ASP
727
A
PHE
728
n
97
PHE
728
A
ILE
729
n
98
ILE
729
A
LEU
730
n
99
LEU
730
A
ARG
731
n
100
ARG
731
A
LYS
732
n
101
LYS
732
A
LYS
733
n
102
LYS
733
A
ASN
734
n
103
ASN
734
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
653
A
N
ARG
22
A
O
PHE
726
A
O
PHE
95
A
N
ARG
731
A
N
ARG
100
A
O
GLU
697
A
O
GLU
66
A
N
GLN
700
A
N
GLN
69
A
O
LEU
708
A
O
LEU
77
1
A
SER
632
A
SER
1
1
Y
1
A
ILE
633
A
ILE
2
1
Y
1
A
THR
634
A
THR
3
1
Y
1
A
SER
635
A
SER
4
1
Y
1
A
THR
636
A
THR
5
1
Y
1
A
VAL
637
A
VAL
6
1
Y
1
A
LEU
638
A
LEU
7
1
Y
1
A
PRO
639
A
PRO
8
1
Y
1
A
PRO
640
A
PRO
9
1
Y
1
A
VAL
641
A
VAL
10
1
Y
1
A
TYR
642
A
TYR
11
1
Y
1
A
ASN
643
A
ASN
12
1
Y
1
A
GLN
644
A
GLN
13
1
Y
1
A
GLN
645
A
GLN
14
1
Y
1
A
ASN
646
A
ASN
15
1
Y
1
A
ARG
653
0.216
SIDE CHAIN
1
A
ARG
681
0.185
SIDE CHAIN
1
A
ARG
731
0.310
SIDE CHAIN
1
A
ASP
648
45.05
84.58
1
A
VAL
656
-101.72
56.50
1
A
GLU
657
-154.76
64.72
1
A
ASP
658
42.06
-142.96
1
A
ASN
659
57.64
114.19
1
A
TYR
664
-110.05
-78.17
1
A
SER
666
173.09
48.72
1
A
LEU
669
-44.17
169.31
1
A
SER
671
170.13
58.30
1
A
GLN
672
-179.50
104.71
1
A
ASP
673
170.29
139.94
1
A
LYS
674
-174.74
-75.72
1
A
THR
675
-38.70
-179.55
1
A
PRO
676
-28.20
-27.51
1
A
MET
683
-90.06
-72.28
1
A
LYS
685
-61.92
-84.37
1
A
HIS
686
-48.34
-86.12
1
A
ASN
687
159.31
56.59
1
A
LEU
688
-125.71
-163.86
1
A
GLU
689
-40.19
165.45
1
A
ASP
691
51.86
125.54
1
A
PRO
692
-87.22
32.69
1
A
ALA
693
-55.90
-102.43
1
A
ILE
702
-121.13
-88.69
1
A
GLU
704
56.67
-94.08
1
A
LYS
706
-155.23
76.62
1
A
ILE
710
58.39
151.04
1
A
PRO
711
-64.18
-159.57
1
A
VAL
716
-40.67
91.74
1
A
PHE
717
171.90
-62.05
1
A
ASN
721
-177.10
-151.50
1
A
GLN
723
178.12
105.92
1
A
VAL
724
38.24
-162.38
1
A
LYS
733
-151.93
-152.37
minimized average
SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF RGL
1
N
N
A
THR
675
A
THR
44
HELX_P
A
MET
683
A
MET
52
1
1
9
SIGNALING PROTEIN
RAS-BINDING DOMAIN, RGL, RAS, RBD, RA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, SIGNALING PROTEIN
RGL1_MOUSE
UNP
1
632
Q60695
SITSTVLPPVYNQQNEDTCIIRISVEDNNGHMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP
DSANVFYAMNSQVNFDFILRKKN
632
734
1EF5
632
734
Q60695
A
1
1
103
1
HIS
see remark 999
ASN
662
1EF5
A
Q60695
UNP
662
31
4
parallel
anti-parallel
anti-parallel
A
ILE
652
A
ILE
21
A
VAL
656
A
VAL
25
A
PHE
726
A
PHE
95
A
LYS
732
A
LYS
101
A
TYR
696
A
TYR
65
A
VAL
701
A
VAL
70
A
LEU
708
A
LEU
77
A
VAL
709
A
VAL
78
1
P 1