0.017727
0.010235
0.000000
0.000000
0.020470
0.000000
0.000000
0.000000
0.007398
0.00000
0.00000
0.00000
Faure, M.
Cohen-Addad, C.
Neuburger, M.
Douce, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
56.410
56.410
135.170
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C8 H16 O2 S2
208.341
DIHYDROLIPOIC ACID
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
R
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
S
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
Y
115
N
C
Y
116
N
N
Y
117
N
C
Y
118
N
C
Y
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
S
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
N
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
S
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
Y
228
N
C
Y
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
R
C
N
271
N
C
N
272
N
C
N
273
N
S
N
274
N
S
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
doub
Y
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
Y
318
N
doub
Y
319
N
sing
Y
320
N
sing
N
321
N
sing
Y
322
N
doub
Y
323
N
sing
Y
324
N
sing
N
325
N
sing
Y
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
267
2890
10.1046/J.1432-1033.2000.01330.X
10806386
Interaction between the Lipoamide-Containing H-Protein and the Lipoamide Dehydrogenase (L-Protein) of the Glycine Decarboxylase Multienzyme System. 2. Crystal Structure of H- and L-Proteins
2000
FR
Biochimie
BICMBE
0466
0300-9084
79
637
10.1016/S0300-9084(97)83496-7
9479445
Structural Studies of the Glycine Decarboxylase Complex from Pea Leaf Mitochondria
1997
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
63
10.1038/NSB0195-63
7719855
The Lipoamide Arm in the Glycine Decarboxylase is not Freely Swinging
1995
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
D51
1041
10.1107/S0907444995006421
15299773
Refined Structures at 2 and 2.2 A Resolution of Two Forms of the H-Protein, a Lipoamide-Containing Protein of the Glycine Decarboxylase Complex
1995
10.2210/pdb1dxm/pdb
pdb_00001dxm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
1998-12-15
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
13962.464
H PROTEIN
2
man
polymer
208.341
DIHYDROLIPOIC ACID
2
syn
non-polymer
18.015
water
145
nat
water
GLYCINE CLEAVAGE SYSTEM H PROTEIN
no
no
SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN
TGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH
SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN
TGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
GARDEN PEA
sample
3888
LEAF
MITOCHONDRIA
PISUM SATIVUM
CYTOPLASM
469008
ESCHERICHIA COLI
BL21(DE3)
PET-HM
1
2.22
44.67
5.20
50 % AMMONIUM SULFATE, 100 MM TRIS MALEATE PH 5.2, 2 MM TCEP (TRIS CARBOXYETHYL PHOSPHINE)
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-07-04
1
1
2011-05-07
1
2
2011-07-13
1
3
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM, AMINOMETHYLTRANSFERASE (E.C.1.4.4.2) FROM GARDEN PEA (PISUM SATIVUM)
H-PROTEIN (E.C.1.4.4.2) COMPLEXED WITH LIPOIC ACID CHARGED IN METHYLAMINE FROM PEA (PISUM SATIVUM)
PDBE
Y
PDBE
2000-01-10
REL
RED
DIHYDROLIPOIC ACID
HOH
water
1HPC
PDB
experimental model
RED
163
2
RED
RED
163
A
RED
163
2
RED
RED
163
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
HOH
2053
3
HOH
HOH
2053
B
HOH
2054
3
HOH
HOH
2054
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2056
3
HOH
HOH
2056
B
HOH
2057
3
HOH
HOH
2057
B
HOH
2058
3
HOH
HOH
2058
B
HOH
2059
3
HOH
HOH
2059
B
HOH
2060
3
HOH
HOH
2060
B
HOH
2061
3
HOH
HOH
2061
B
HOH
2062
3
HOH
HOH
2062
B
HOH
2063
3
HOH
HOH
2063
B
HOH
2064
3
HOH
HOH
2064
B
HOH
2065
3
HOH
HOH
2065
B
HOH
2066
3
HOH
HOH
2066
B
HOH
2067
3
HOH
HOH
2067
B
HOH
2068
3
HOH
HOH
2068
B
HOH
2069
3
HOH
HOH
2069
B
HOH
2070
3
HOH
HOH
2070
B
HOH
2071
3
HOH
HOH
2071
B
HOH
2072
3
HOH
HOH
2072
B
HOH
2073
3
HOH
HOH
2073
B
HOH
2074
3
HOH
HOH
2074
B
HOH
2075
3
HOH
HOH
2075
B
HOH
2076
3
HOH
HOH
2076
B
HOH
2077
3
HOH
HOH
2077
B
HOH
2078
3
HOH
HOH
2078
B
HOH
2079
3
HOH
HOH
2079
B
HOH
2080
3
HOH
HOH
2080
B
HOH
2081
3
HOH
HOH
2081
B
HOH
2082
3
HOH
HOH
2082
B
HOH
2083
3
HOH
HOH
2083
B
HOH
2084
3
HOH
HOH
2084
B
SER
1
n
1
SER
1
A
ASN
2
n
2
ASN
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
ASP
5
n
5
ASP
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
LYS
8
n
8
LYS
8
A
TYR
9
n
9
TYR
9
A
ALA
10
n
10
ALA
10
A
PRO
11
n
11
PRO
11
A
SER
12
n
12
SER
12
A
HIS
13
n
13
HIS
13
A
GLU
14
n
14
GLU
14
A
TRP
15
n
15
TRP
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
HIS
18
n
18
HIS
18
A
GLU
19
n
19
GLU
19
A
GLY
20
n
20
GLY
20
A
SER
21
n
21
SER
21
A
VAL
22
n
22
VAL
22
A
ALA
23
n
23
ALA
23
A
THR
24
n
24
THR
24
A
ILE
25
n
25
ILE
25
A
GLY
26
n
26
GLY
26
A
ILE
27
n
27
ILE
27
A
THR
28
n
28
THR
28
A
ASP
29
n
29
ASP
29
A
HIS
30
n
30
HIS
30
A
ALA
31
n
31
ALA
31
A
GLN
32
n
32
GLN
32
A
ASP
33
n
33
ASP
33
A
HIS
34
n
34
HIS
34
A
LEU
35
n
35
LEU
35
A
GLY
36
n
36
GLY
36
A
GLU
37
n
37
GLU
37
A
VAL
38
n
38
VAL
38
A
VAL
39
n
39
VAL
39
A
PHE
40
n
40
PHE
40
A
VAL
41
n
41
VAL
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
PRO
44
n
44
PRO
44
A
GLU
45
n
45
GLU
45
A
PRO
46
n
46
PRO
46
A
GLY
47
n
47
GLY
47
A
VAL
48
n
48
VAL
48
A
SER
49
n
49
SER
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
PHE
56
n
56
PHE
56
A
GLY
57
n
57
GLY
57
A
ALA
58
n
58
ALA
58
A
VAL
59
n
59
VAL
59
A
GLU
60
n
60
GLU
60
A
SER
61
n
61
SER
61
A
VAL
62
n
62
VAL
62
A
LYS
63
n
63
LYS
63
A
ALA
64
n
64
ALA
64
A
THR
65
n
65
THR
65
A
SER
66
n
66
SER
66
A
ASP
67
n
67
ASP
67
A
VAL
68
n
68
VAL
68
A
ASN
69
n
69
ASN
69
A
SER
70
n
70
SER
70
A
PRO
71
n
71
PRO
71
A
ILE
72
n
72
ILE
72
A
SER
73
n
73
SER
73
A
GLY
74
n
74
GLY
74
A
GLU
75
n
75
GLU
75
A
VAL
76
n
76
VAL
76
A
ILE
77
n
77
ILE
77
A
GLU
78
n
78
GLU
78
A
VAL
79
n
79
VAL
79
A
ASN
80
n
80
ASN
80
A
THR
81
n
81
THR
81
A
GLY
82
n
82
GLY
82
A
LEU
83
n
83
LEU
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
LYS
86
n
86
LYS
86
A
PRO
87
n
87
PRO
87
A
GLY
88
n
88
GLY
88
A
LEU
89
n
89
LEU
89
A
ILE
90
n
90
ILE
90
A
ASN
91
n
91
ASN
91
A
SER
92
n
92
SER
92
A
SER
93
n
93
SER
93
A
PRO
94
n
94
PRO
94
A
TYR
95
n
95
TYR
95
A
GLU
96
n
96
GLU
96
A
ASP
97
n
97
ASP
97
A
GLY
98
n
98
GLY
98
A
TRP
99
n
99
TRP
99
A
MET
100
n
100
MET
100
A
ILE
101
n
101
ILE
101
A
LYS
102
n
102
LYS
102
A
ILE
103
n
103
ILE
103
A
LYS
104
n
104
LYS
104
A
PRO
105
n
105
PRO
105
A
THR
106
n
106
THR
106
A
SER
107
n
107
SER
107
A
PRO
108
n
108
PRO
108
A
ASP
109
n
109
ASP
109
A
GLU
110
n
110
GLU
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
SER
113
n
113
SER
113
A
LEU
114
n
114
LEU
114
A
LEU
115
n
115
LEU
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
TYR
120
n
120
TYR
120
A
THR
121
n
121
THR
121
A
LYS
122
n
122
LYS
122
A
PHE
123
n
123
PHE
123
A
CYS
124
n
124
CYS
124
A
GLU
125
n
125
GLU
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
ASP
128
n
128
ASP
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
HIS
131
n
131
HIS
131
A
SER
1
n
1
SER
1
B
ASN
2
n
2
ASN
2
B
VAL
3
n
3
VAL
3
B
LEU
4
n
4
LEU
4
B
ASP
5
n
5
ASP
5
B
GLY
6
n
6
GLY
6
B
LEU
7
n
7
LEU
7
B
LYS
8
n
8
LYS
8
B
TYR
9
n
9
TYR
9
B
ALA
10
n
10
ALA
10
B
PRO
11
n
11
PRO
11
B
SER
12
n
12
SER
12
B
HIS
13
n
13
HIS
13
B
GLU
14
n
14
GLU
14
B
TRP
15
n
15
TRP
15
B
VAL
16
n
16
VAL
16
B
LYS
17
n
17
LYS
17
B
HIS
18
n
18
HIS
18
B
GLU
19
n
19
GLU
19
B
GLY
20
n
20
GLY
20
B
SER
21
n
21
SER
21
B
VAL
22
n
22
VAL
22
B
ALA
23
n
23
ALA
23
B
THR
24
n
24
THR
24
B
ILE
25
n
25
ILE
25
B
GLY
26
n
26
GLY
26
B
ILE
27
n
27
ILE
27
B
THR
28
n
28
THR
28
B
ASP
29
n
29
ASP
29
B
HIS
30
n
30
HIS
30
B
ALA
31
n
31
ALA
31
B
GLN
32
n
32
GLN
32
B
ASP
33
n
33
ASP
33
B
HIS
34
n
34
HIS
34
B
LEU
35
n
35
LEU
35
B
GLY
36
n
36
GLY
36
B
GLU
37
n
37
GLU
37
B
VAL
38
n
38
VAL
38
B
VAL
39
n
39
VAL
39
B
PHE
40
n
40
PHE
40
B
VAL
41
n
41
VAL
41
B
GLU
42
n
42
GLU
42
B
LEU
43
n
43
LEU
43
B
PRO
44
n
44
PRO
44
B
GLU
45
n
45
GLU
45
B
PRO
46
n
46
PRO
46
B
GLY
47
n
47
GLY
47
B
VAL
48
n
48
VAL
48
B
SER
49
n
49
SER
49
B
VAL
50
n
50
VAL
50
B
THR
51
n
51
THR
51
B
LYS
52
n
52
LYS
52
B
GLY
53
n
53
GLY
53
B
LYS
54
n
54
LYS
54
B
GLY
55
n
55
GLY
55
B
PHE
56
n
56
PHE
56
B
GLY
57
n
57
GLY
57
B
ALA
58
n
58
ALA
58
B
VAL
59
n
59
VAL
59
B
GLU
60
n
60
GLU
60
B
SER
61
n
61
SER
61
B
VAL
62
n
62
VAL
62
B
LYS
63
n
63
LYS
63
B
ALA
64
n
64
ALA
64
B
THR
65
n
65
THR
65
B
SER
66
n
66
SER
66
B
ASP
67
n
67
ASP
67
B
VAL
68
n
68
VAL
68
B
ASN
69
n
69
ASN
69
B
SER
70
n
70
SER
70
B
PRO
71
n
71
PRO
71
B
ILE
72
n
72
ILE
72
B
SER
73
n
73
SER
73
B
GLY
74
n
74
GLY
74
B
GLU
75
n
75
GLU
75
B
VAL
76
n
76
VAL
76
B
ILE
77
n
77
ILE
77
B
GLU
78
n
78
GLU
78
B
VAL
79
n
79
VAL
79
B
ASN
80
n
80
ASN
80
B
THR
81
n
81
THR
81
B
GLY
82
n
82
GLY
82
B
LEU
83
n
83
LEU
83
B
THR
84
n
84
THR
84
B
GLY
85
n
85
GLY
85
B
LYS
86
n
86
LYS
86
B
PRO
87
n
87
PRO
87
B
GLY
88
n
88
GLY
88
B
LEU
89
n
89
LEU
89
B
ILE
90
n
90
ILE
90
B
ASN
91
n
91
ASN
91
B
SER
92
n
92
SER
92
B
SER
93
n
93
SER
93
B
PRO
94
n
94
PRO
94
B
TYR
95
n
95
TYR
95
B
GLU
96
n
96
GLU
96
B
ASP
97
n
97
ASP
97
B
GLY
98
n
98
GLY
98
B
TRP
99
n
99
TRP
99
B
MET
100
n
100
MET
100
B
ILE
101
n
101
ILE
101
B
LYS
102
n
102
LYS
102
B
ILE
103
n
103
ILE
103
B
LYS
104
n
104
LYS
104
B
PRO
105
n
105
PRO
105
B
THR
106
n
106
THR
106
B
SER
107
n
107
SER
107
B
PRO
108
n
108
PRO
108
B
ASP
109
n
109
ASP
109
B
GLU
110
n
110
GLU
110
B
LEU
111
n
111
LEU
111
B
GLU
112
n
112
GLU
112
B
SER
113
n
113
SER
113
B
LEU
114
n
114
LEU
114
B
LEU
115
n
115
LEU
115
B
GLY
116
n
116
GLY
116
B
ALA
117
n
117
ALA
117
B
LYS
118
n
118
LYS
118
B
GLU
119
n
119
GLU
119
B
TYR
120
n
120
TYR
120
B
THR
121
n
121
THR
121
B
LYS
122
n
122
LYS
122
B
PHE
123
n
123
PHE
123
B
CYS
124
n
124
CYS
124
B
GLU
125
n
125
GLU
125
B
GLU
126
n
126
GLU
126
B
GLU
127
n
127
GLU
127
B
ASP
128
n
128
ASP
128
B
ALA
129
n
129
ALA
129
B
ALA
130
n
130
ALA
130
B
HIS
131
n
131
HIS
131
B
software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
15
A
O
TRP
15
A
N
GLY
26
A
N
GLY
26
A
O
ALA
23
A
O
ALA
23
A
N
ILE
103
A
N
ILE
103
A
O
LYS
102
A
O
LYS
102
A
N
GLU
78
A
N
GLU
78
A
O
VAL
39
A
O
VAL
39
A
N
GLU
60
A
N
GLU
60
A
O
PHE
56
A
O
PHE
56
A
N
VAL
68
A
N
VAL
68
B
O
LYS
8
B
O
LYS
8
B
N
VAL
16
B
N
VAL
16
B
O
TRP
15
B
O
TRP
15
B
N
GLY
26
B
N
GLY
26
B
O
ALA
23
B
O
ALA
23
B
N
ILE
103
B
N
ILE
103
B
O
LYS
102
B
O
LYS
102
B
N
GLU
78
B
N
GLU
78
B
O
VAL
39
B
O
VAL
39
B
N
GLU
60
B
N
GLU
60
B
O
PHE
56
B
O
PHE
56
B
N
VAL
68
B
N
VAL
68
1
A
LYS
86
-119.78
76.51
1
A
GLU
96
-106.73
-80.02
1
A
ASP
109
-57.90
-9.86
1
A
ALA
130
-75.13
30.28
1
B
HIS
13
72.18
36.03
1
B
PRO
44
-77.40
-164.42
1
B
ALA
58
-176.09
139.25
1
B
GLU
96
-107.63
-83.76
PARHCSDX.PRO
TOPHCSDX.PRO
37.9
3.41
-2.07
0.00
3.41
0.00
-6.82
BULK SOLVENT MODEL USED
0.260
0.013
0.204
0.204
2.60
40.00
410
7740
5.3
94.8
RANDOM
1374190.82
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1HPC
FLAT MODEL
48
0.358993
0.43
0.30
5.00
0.63
0.38
2.60
40.00
145
2133
22
0
1966
0.007
1.3
25.0
1.17
1.43
1.50
2.44
2.00
1.98
2.00
3.09
2.50
0.360
0.046
0.283
2.76
60
1217
6
4.7
96.4
47.6
2.600
40.000
1DXM
7808
0.000
0.11000
1
4.7000
3.000
97.1
2.60
2.74
3.000
0.24000
1
2.90
98.3
refinement
CNS
0.5
data reduction
XDS
data scaling
SCALA
phasing
CNS
0.5
Reduced form of the H protein from glycine decarboxylase complex
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
BIOLOGICAL_UNIT: MONOMERTHE GLYCINE CLEAVAGE
SYSTEM IS COMPOSED OF FOUR PROTEINS:P, T, L,
AND H. THE H CHAIN WAS STUDIED HERE. THIS
COMPONENTSHUTTLES THE METHYLAMINE GROUP OF GLYCINE
FROM THE P PROTEINTO THE T PROTEIN. THE H
CHAIN CONTAINS A COVALENTLY-BOUNDLIPOYL COFACTOR.
A
THR
28
A
THR
28
HELX_P
A
GLY
36
A
GLY
36
1
1
9
A
THR
81
A
THR
81
HELX_P
A
LYS
86
A
LYS
86
1
2
6
A
GLY
88
A
GLY
88
HELX_P
A
SER
93
A
SER
93
1
3
6
A
SER
107
A
SER
107
HELX_P
A
SER
113
A
SER
113
5
4
7
A
GLY
116
A
GLY
116
HELX_P
A
ALA
130
A
ALA
130
1
5
15
B
THR
28
B
THR
28
HELX_P
B
GLY
36
B
GLY
36
1
6
9
B
THR
81
B
THR
81
HELX_P
B
THR
84
B
THR
84
5
7
4
B
GLY
88
B
GLY
88
HELX_P
B
SER
93
B
SER
93
1
8
6
B
SER
107
B
SER
107
HELX_P
B
SER
113
B
SER
113
5
9
7
B
GLY
116
B
GLY
116
HELX_P
B
ALA
129
B
ALA
129
1
10
14
covale
1.351
one
A
LYS
63
A
NZ
LYS
63
1_555
A
RED
163
C
C1
RED
1_555
covale
1.346
one
B
LYS
63
B
NZ
LYS
63
1_555
B
RED
163
D
C1
RED
1_555
OXIDOREDUCTASES(ACTING ON CH-NH2 DONOR)
OXIDOREDUCTASES(ACTING ON CH-NH2 DONOR), GLYCINE DECARBOXYLASE, MITOCHONDRIA
given
0.394430
0.547610
0.737940
0.913690
-0.319300
-0.251430
0.097940
0.773420
-0.626290
-0.16918
-0.57433
0.15324
GCSH_PEA
UNP
1
P16048
35
165
1DXM
1
131
P16048
A
1
1
131
35
165
1DXM
1
131
P16048
B
1
1
131
4
3
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
14
A
GLU
14
A
GLU
19
A
GLU
19
A
VAL
22
A
VAL
22
A
ILE
27
A
ILE
27
A
ILE
101
A
ILE
101
A
PRO
105
A
PRO
105
A
GLY
74
A
GLY
74
A
VAL
79
A
VAL
79
A
VAL
38
A
VAL
38
A
GLU
42
A
GLU
42
A
GLY
55
A
GLY
55
A
SER
61
A
SER
61
A
THR
65
A
THR
65
A
ASN
69
A
ASN
69
B
LYS
8
B
LYS
8
B
ALA
10
B
ALA
10
B
GLU
14
B
GLU
14
B
GLU
19
B
GLU
19
B
VAL
22
B
VAL
22
B
ILE
27
B
ILE
27
B
ILE
101
B
ILE
101
B
PRO
105
B
PRO
105
B
GLY
74
B
GLY
74
B
VAL
79
B
VAL
79
B
VAL
38
B
VAL
38
B
GLU
42
B
GLU
42
B
GLY
55
B
GLY
55
B
SER
61
B
SER
61
B
THR
65
B
THR
65
B
ASN
69
B
ASN
69
BINDING SITE FOR RESIDUE RED A 163
A
RED
163
Software
4
BINDING SITE FOR RESIDUE RED B 163
B
RED
163
Software
6
A
HIS
34
A
HIS
34
4
1_555
A
LEU
35
A
LEU
35
4
1_555
A
LYS
63
A
LYS
63
4
1_555
A
GLU
127
A
GLU
127
4
1_555
A
SER
21
A
SER
21
6
1_555
A
VAL
22
A
VAL
22
6
1_555
A
GLU
78
A
GLU
78
6
1_555
A
LYS
102
A
LYS
102
6
1_555
B
HIS
34
B
HIS
34
6
1_555
B
LYS
63
B
LYS
63
6
1_555
152
P 31 2 1