0.020387
-0.000001
-0.000001
0.000000
0.015192
0.000000
0.000000
0.000000
0.010747
0.00000
0.00000
0.00000
Eswaramoorthy, S.
Swaminathan, S.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
49.052
65.823
93.052
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H10 N O6 P
247.142
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
127
135
10.1107/S0907444902018012
12499548
Structure of a yeast hypothetical protein selected by a structural genomics approach.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1998-11-12
BRANDEIS
MAD
M
x-ray
1
0.9803
1.0
X12C
NSLS
0.9803
SYNCHROTRON
NSLS BEAMLINE X12C
29173.719
PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET)
1
man
polymer
247.142
PYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
18.015
water
204
nat
water
no
yes
STGITYDEDRKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKL
LPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIF
EVIDFFLSEECKYIKLNGL(MSE)TIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLS(MSE)G(MSE)SADFRE
AIRQGTAEVRIGTDIFGARPPKNEARII
STGITYDEDRKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKL
LPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIF
EVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIG
TDIFGARPPKNEARII
A
NYSGXRC-P007
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
YBL 036C
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
4932
Saccharomyces cerevisiae
PLASMID
PET-13A B834(DE3)
1
2.58
0.5
VAPOR DIFFUSION, HANGING DROP
5.6
30% PEG 4000, 0.1M sodium citrate, 0.2M ammonium acetate, 2.9 mg/ml protein in 6.25mM HEPES and 62.5mM NaCl, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Derived calculations
Structure summary
1
0
1999-09-02
1
1
2007-10-16
1
2
2011-07-13
1
3
2021-02-03
_audit_author.identifier_ORCID
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1B54 is the wild type of the same protein
Y
RCSB
Y
RCSB
1999-08-18
REL
REL
PLP
PYRIDOXAL-5'-PHOSPHATE
HOH
water
PLP
258
2
PLP
PLP
258
A
HOH
1
3
HOH
HOH
259
A
HOH
2
3
HOH
HOH
260
A
HOH
3
3
HOH
HOH
261
A
HOH
4
3
HOH
HOH
262
A
HOH
5
3
HOH
HOH
263
A
HOH
7
3
HOH
HOH
264
A
HOH
8
3
HOH
HOH
265
A
HOH
9
3
HOH
HOH
266
A
HOH
10
3
HOH
HOH
267
A
HOH
11
3
HOH
HOH
268
A
HOH
12
3
HOH
HOH
269
A
HOH
13
3
HOH
HOH
270
A
HOH
14
3
HOH
HOH
271
A
HOH
15
3
HOH
HOH
272
A
HOH
16
3
HOH
HOH
273
A
HOH
17
3
HOH
HOH
274
A
HOH
18
3
HOH
HOH
275
A
HOH
19
3
HOH
HOH
276
A
HOH
20
3
HOH
HOH
277
A
HOH
21
3
HOH
HOH
278
A
HOH
22
3
HOH
HOH
279
A
HOH
23
3
HOH
HOH
280
A
HOH
24
3
HOH
HOH
281
A
HOH
25
3
HOH
HOH
282
A
HOH
26
3
HOH
HOH
283
A
HOH
27
3
HOH
HOH
284
A
HOH
28
3
HOH
HOH
285
A
HOH
29
3
HOH
HOH
286
A
HOH
30
3
HOH
HOH
287
A
HOH
31
3
HOH
HOH
288
A
HOH
32
3
HOH
HOH
289
A
HOH
33
3
HOH
HOH
290
A
HOH
34
3
HOH
HOH
291
A
HOH
35
3
HOH
HOH
292
A
HOH
36
3
HOH
HOH
293
A
HOH
37
3
HOH
HOH
294
A
HOH
38
3
HOH
HOH
295
A
HOH
39
3
HOH
HOH
296
A
HOH
40
3
HOH
HOH
297
A
HOH
41
3
HOH
HOH
298
A
HOH
42
3
HOH
HOH
299
A
HOH
43
3
HOH
HOH
300
A
HOH
44
3
HOH
HOH
301
A
HOH
45
3
HOH
HOH
302
A
HOH
46
3
HOH
HOH
303
A
HOH
47
3
HOH
HOH
304
A
HOH
48
3
HOH
HOH
305
A
HOH
49
3
HOH
HOH
306
A
HOH
50
3
HOH
HOH
307
A
HOH
51
3
HOH
HOH
308
A
HOH
52
3
HOH
HOH
309
A
HOH
53
3
HOH
HOH
310
A
HOH
54
3
HOH
HOH
311
A
HOH
55
3
HOH
HOH
312
A
HOH
56
3
HOH
HOH
313
A
HOH
57
3
HOH
HOH
314
A
HOH
58
3
HOH
HOH
315
A
HOH
59
3
HOH
HOH
316
A
HOH
60
3
HOH
HOH
317
A
HOH
61
3
HOH
HOH
318
A
HOH
62
3
HOH
HOH
319
A
HOH
63
3
HOH
HOH
320
A
HOH
64
3
HOH
HOH
321
A
HOH
65
3
HOH
HOH
322
A
HOH
66
3
HOH
HOH
323
A
HOH
67
3
HOH
HOH
324
A
HOH
68
3
HOH
HOH
325
A
HOH
69
3
HOH
HOH
326
A
HOH
71
3
HOH
HOH
327
A
HOH
72
3
HOH
HOH
328
A
HOH
73
3
HOH
HOH
329
A
HOH
74
3
HOH
HOH
330
A
HOH
75
3
HOH
HOH
331
A
HOH
77
3
HOH
HOH
332
A
HOH
78
3
HOH
HOH
333
A
HOH
79
3
HOH
HOH
334
A
HOH
80
3
HOH
HOH
335
A
HOH
81
3
HOH
HOH
336
A
HOH
82
3
HOH
HOH
337
A
HOH
83
3
HOH
HOH
338
A
HOH
84
3
HOH
HOH
339
A
HOH
85
3
HOH
HOH
340
A
HOH
86
3
HOH
HOH
341
A
HOH
87
3
HOH
HOH
342
A
HOH
88
3
HOH
HOH
343
A
HOH
89
3
HOH
HOH
344
A
HOH
90
3
HOH
HOH
345
A
HOH
91
3
HOH
HOH
346
A
HOH
92
3
HOH
HOH
347
A
HOH
93
3
HOH
HOH
348
A
HOH
94
3
HOH
HOH
349
A
HOH
95
3
HOH
HOH
350
A
HOH
96
3
HOH
HOH
351
A
HOH
97
3
HOH
HOH
352
A
HOH
98
3
HOH
HOH
353
A
HOH
99
3
HOH
HOH
354
A
HOH
100
3
HOH
HOH
355
A
HOH
101
3
HOH
HOH
356
A
HOH
102
3
HOH
HOH
357
A
HOH
103
3
HOH
HOH
358
A
HOH
104
3
HOH
HOH
359
A
HOH
105
3
HOH
HOH
360
A
HOH
106
3
HOH
HOH
361
A
HOH
107
3
HOH
HOH
362
A
HOH
108
3
HOH
HOH
363
A
HOH
109
3
HOH
HOH
364
A
HOH
110
3
HOH
HOH
365
A
HOH
111
3
HOH
HOH
366
A
HOH
112
3
HOH
HOH
367
A
HOH
113
3
HOH
HOH
368
A
HOH
114
3
HOH
HOH
369
A
HOH
115
3
HOH
HOH
370
A
HOH
116
3
HOH
HOH
371
A
HOH
117
3
HOH
HOH
372
A
HOH
118
3
HOH
HOH
373
A
HOH
119
3
HOH
HOH
374
A
HOH
120
3
HOH
HOH
375
A
HOH
121
3
HOH
HOH
376
A
HOH
122
3
HOH
HOH
377
A
HOH
123
3
HOH
HOH
378
A
HOH
125
3
HOH
HOH
379
A
HOH
126
3
HOH
HOH
380
A
HOH
127
3
HOH
HOH
381
A
HOH
128
3
HOH
HOH
382
A
HOH
129
3
HOH
HOH
383
A
HOH
130
3
HOH
HOH
384
A
HOH
131
3
HOH
HOH
385
A
HOH
132
3
HOH
HOH
386
A
HOH
133
3
HOH
HOH
387
A
HOH
134
3
HOH
HOH
388
A
HOH
135
3
HOH
HOH
389
A
HOH
136
3
HOH
HOH
390
A
HOH
137
3
HOH
HOH
391
A
HOH
138
3
HOH
HOH
392
A
HOH
139
3
HOH
HOH
393
A
HOH
140
3
HOH
HOH
394
A
HOH
141
3
HOH
HOH
395
A
HOH
142
3
HOH
HOH
396
A
HOH
143
3
HOH
HOH
397
A
HOH
144
3
HOH
HOH
398
A
HOH
145
3
HOH
HOH
399
A
HOH
146
3
HOH
HOH
400
A
HOH
147
3
HOH
HOH
401
A
HOH
148
3
HOH
HOH
402
A
HOH
149
3
HOH
HOH
403
A
HOH
150
3
HOH
HOH
404
A
HOH
151
3
HOH
HOH
405
A
HOH
152
3
HOH
HOH
406
A
HOH
153
3
HOH
HOH
407
A
HOH
154
3
HOH
HOH
408
A
HOH
156
3
HOH
HOH
409
A
HOH
157
3
HOH
HOH
410
A
HOH
158
3
HOH
HOH
411
A
HOH
159
3
HOH
HOH
412
A
HOH
161
3
HOH
HOH
413
A
HOH
162
3
HOH
HOH
414
A
HOH
163
3
HOH
HOH
415
A
HOH
164
3
HOH
HOH
416
A
HOH
165
3
HOH
HOH
417
A
HOH
166
3
HOH
HOH
418
A
HOH
167
3
HOH
HOH
419
A
HOH
168
3
HOH
HOH
420
A
HOH
169
3
HOH
HOH
421
A
HOH
170
3
HOH
HOH
422
A
HOH
171
3
HOH
HOH
423
A
HOH
172
3
HOH
HOH
424
A
HOH
173
3
HOH
HOH
425
A
HOH
174
3
HOH
HOH
426
A
HOH
175
3
HOH
HOH
427
A
HOH
177
3
HOH
HOH
428
A
HOH
178
3
HOH
HOH
429
A
HOH
179
3
HOH
HOH
430
A
HOH
180
3
HOH
HOH
431
A
HOH
181
3
HOH
HOH
432
A
HOH
182
3
HOH
HOH
433
A
HOH
183
3
HOH
HOH
434
A
HOH
185
3
HOH
HOH
435
A
HOH
188
3
HOH
HOH
436
A
HOH
189
3
HOH
HOH
437
A
HOH
191
3
HOH
HOH
438
A
HOH
192
3
HOH
HOH
439
A
HOH
193
3
HOH
HOH
440
A
HOH
194
3
HOH
HOH
441
A
HOH
195
3
HOH
HOH
442
A
HOH
196
3
HOH
HOH
443
A
HOH
200
3
HOH
HOH
444
A
HOH
201
3
HOH
HOH
445
A
HOH
202
3
HOH
HOH
446
A
HOH
203
3
HOH
HOH
447
A
HOH
204
3
HOH
HOH
448
A
HOH
206
3
HOH
HOH
449
A
HOH
207
3
HOH
HOH
450
A
HOH
208
3
HOH
HOH
451
A
HOH
209
3
HOH
HOH
452
A
HOH
210
3
HOH
HOH
453
A
HOH
213
3
HOH
HOH
454
A
HOH
216
3
HOH
HOH
455
A
HOH
218
3
HOH
HOH
456
A
HOH
221
3
HOH
HOH
457
A
HOH
222
3
HOH
HOH
458
A
HOH
223
3
HOH
HOH
459
A
HOH
224
3
HOH
HOH
460
A
HOH
225
3
HOH
HOH
461
A
HOH
226
3
HOH
HOH
462
A
n
1
2
A
THR
3
n
2
THR
3
A
GLY
4
n
3
GLY
4
A
ILE
5
n
4
ILE
5
A
THR
6
n
5
THR
6
A
TYR
7
n
6
TYR
7
A
ASP
8
n
7
ASP
8
A
GLU
9
n
8
GLU
9
A
ASP
10
n
9
ASP
10
A
ARG
11
n
10
ARG
11
A
LYS
12
n
11
LYS
12
A
THR
13
n
12
THR
13
A
GLN
14
n
13
GLN
14
A
LEU
15
n
14
LEU
15
A
ILE
16
n
15
ILE
16
A
ALA
17
n
16
ALA
17
A
GLN
18
n
17
GLN
18
A
TYR
19
n
18
TYR
19
A
GLU
20
n
19
GLU
20
A
SER
21
n
20
SER
21
A
VAL
22
n
21
VAL
22
A
ARG
23
n
22
ARG
23
A
GLU
24
n
23
GLU
24
A
VAL
25
n
24
VAL
25
A
VAL
26
n
25
VAL
26
A
ASN
27
n
26
ASN
27
A
ALA
28
n
27
ALA
28
A
GLU
29
n
28
GLU
29
A
ALA
30
n
29
ALA
30
A
LYS
31
n
30
LYS
31
A
ASN
32
n
31
ASN
32
A
VAL
33
n
32
VAL
33
A
n
33
34
A
n
34
35
A
n
35
36
A
n
36
37
A
n
37
38
A
n
38
39
A
n
39
40
A
LYS
41
n
40
LYS
41
A
ILE
42
n
41
ILE
42
A
LEU
43
n
42
LEU
43
A
LEU
44
n
43
LEU
44
A
LEU
45
n
44
LEU
45
A
VAL
46
n
45
VAL
46
A
VAL
47
n
46
VAL
47
A
SER
48
n
47
SER
48
A
LYS
49
n
48
LYS
49
A
LEU
50
n
49
LEU
50
A
LYS
51
n
50
LYS
51
A
PRO
52
n
51
PRO
52
A
ALA
53
n
52
ALA
53
A
SER
54
n
53
SER
54
A
ASP
55
n
54
ASP
55
A
ILE
56
n
55
ILE
56
A
GLN
57
n
56
GLN
57
A
ILE
58
n
57
ILE
58
A
LEU
59
n
58
LEU
59
A
TYR
60
n
59
TYR
60
A
ASP
61
n
60
ASP
61
A
HIS
62
n
61
HIS
62
A
GLY
63
n
62
GLY
63
A
VAL
64
n
63
VAL
64
A
ARG
65
n
64
ARG
65
A
GLU
66
n
65
GLU
66
A
PHE
67
n
66
PHE
67
A
GLY
68
n
67
GLY
68
A
GLU
69
n
68
GLU
69
A
ASN
70
n
69
ASN
70
A
TYR
71
n
70
TYR
71
A
VAL
72
n
71
VAL
72
A
GLN
73
n
72
GLN
73
A
GLU
74
n
73
GLU
74
A
LEU
75
n
74
LEU
75
A
ILE
76
n
75
ILE
76
A
GLU
77
n
76
GLU
77
A
LYS
78
n
77
LYS
78
A
ALA
79
n
78
ALA
79
A
LYS
80
n
79
LYS
80
A
LEU
81
n
80
LEU
81
A
LEU
82
n
81
LEU
82
A
PRO
83
n
82
PRO
83
A
ASP
84
n
83
ASP
84
A
ASP
85
n
84
ASP
85
A
ILE
86
n
85
ILE
86
A
LYS
87
n
86
LYS
87
A
TRP
88
n
87
TRP
88
A
HIS
89
n
88
HIS
89
A
PHE
90
n
89
PHE
90
A
ILE
91
n
90
ILE
91
A
GLY
92
n
91
GLY
92
A
GLY
93
n
92
GLY
93
A
LEU
94
n
93
LEU
94
A
GLN
95
n
94
GLN
95
A
THR
96
n
95
THR
96
A
ASN
97
n
96
ASN
97
A
LYS
98
n
97
LYS
98
A
CYS
99
n
98
CYS
99
A
LYS
100
n
99
LYS
100
A
ASP
101
n
100
ASP
101
A
LEU
102
n
101
LEU
102
A
ALA
103
n
102
ALA
103
A
LYS
104
n
103
LYS
104
A
VAL
105
n
104
VAL
105
A
PRO
106
n
105
PRO
106
A
ASN
107
n
106
ASN
107
A
LEU
108
n
107
LEU
108
A
TYR
109
n
108
TYR
109
A
SER
110
n
109
SER
110
A
VAL
111
n
110
VAL
111
A
GLU
112
n
111
GLU
112
A
THR
113
n
112
THR
113
A
ILE
114
n
113
ILE
114
A
ASP
115
n
114
ASP
115
A
SER
116
n
115
SER
116
A
LEU
117
n
116
LEU
117
A
LYS
118
n
117
LYS
118
A
LYS
119
n
118
LYS
119
A
ALA
120
n
119
ALA
120
A
LYS
121
n
120
LYS
121
A
LYS
122
n
121
LYS
122
A
LEU
123
n
122
LEU
123
A
ASN
124
n
123
ASN
124
A
GLU
125
n
124
GLU
125
A
SER
126
n
125
SER
126
A
ARG
127
n
126
ARG
127
A
ALA
128
n
127
ALA
128
A
LYS
129
n
128
LYS
129
A
PHE
130
n
129
PHE
130
A
GLN
131
n
130
GLN
131
A
PRO
132
n
131
PRO
132
A
ASP
133
n
132
ASP
133
A
CYS
134
n
133
CYS
134
A
ASN
135
n
134
ASN
135
A
PRO
136
n
135
PRO
136
A
ILE
137
n
136
ILE
137
A
LEU
138
n
137
LEU
138
A
CYS
139
n
138
CYS
139
A
ASN
140
n
139
ASN
140
A
VAL
141
n
140
VAL
141
A
GLN
142
n
141
GLN
142
A
ILE
143
n
142
ILE
143
A
ASN
144
n
143
ASN
144
A
THR
145
n
144
THR
145
A
SER
146
n
145
SER
146
A
HIS
147
n
146
HIS
147
A
GLU
148
n
147
GLU
148
A
ASP
149
n
148
ASP
149
A
GLN
150
n
149
GLN
150
A
LYS
151
n
150
LYS
151
A
SER
152
n
151
SER
152
A
GLY
153
n
152
GLY
153
A
LEU
154
n
153
LEU
154
A
ASN
155
n
154
ASN
155
A
ASN
156
n
155
ASN
156
A
GLU
157
n
156
GLU
157
A
ALA
158
n
157
ALA
158
A
GLU
159
n
158
GLU
159
A
ILE
160
n
159
ILE
160
A
PHE
161
n
160
PHE
161
A
GLU
162
n
161
GLU
162
A
VAL
163
n
162
VAL
163
A
ILE
164
n
163
ILE
164
A
ASP
165
n
164
ASP
165
A
PHE
166
n
165
PHE
166
A
PHE
167
n
166
PHE
167
A
LEU
168
n
167
LEU
168
A
SER
169
n
168
SER
169
A
GLU
170
n
169
GLU
170
A
GLU
171
n
170
GLU
171
A
CYS
172
n
171
CYS
172
A
LYS
173
n
172
LYS
173
A
TYR
174
n
173
TYR
174
A
ILE
175
n
174
ILE
175
A
LYS
176
n
175
LYS
176
A
LEU
177
n
176
LEU
177
A
ASN
178
n
177
ASN
178
A
GLY
179
n
178
GLY
179
A
LEU
180
n
179
LEU
180
A
MSE
181
n
180
MSE
181
A
THR
182
n
181
THR
182
A
ILE
183
n
182
ILE
183
A
GLY
184
n
183
GLY
184
A
SER
185
n
184
SER
185
A
TRP
186
n
185
TRP
186
A
n
186
187
A
n
187
188
A
n
188
189
A
n
189
190
A
n
190
191
A
n
191
192
A
n
192
193
A
n
193
194
A
n
194
195
A
ASN
196
n
195
ASN
196
A
ARG
197
n
196
ARG
197
A
ASP
198
n
197
ASP
198
A
PHE
199
n
198
PHE
199
A
ALA
200
n
199
ALA
200
A
THR
201
n
200
THR
201
A
LEU
202
n
201
LEU
202
A
VAL
203
n
202
VAL
203
A
GLU
204
n
203
GLU
204
A
TRP
205
n
204
TRP
205
A
LYS
206
n
205
LYS
206
A
LYS
207
n
206
LYS
207
A
LYS
208
n
207
LYS
208
A
ILE
209
n
208
ILE
209
A
ASP
210
n
209
ASP
210
A
ALA
211
n
210
ALA
211
A
LYS
212
n
211
LYS
212
A
PHE
213
n
212
PHE
213
A
GLY
214
n
213
GLY
214
A
THR
215
n
214
THR
215
A
SER
216
n
215
SER
216
A
LEU
217
n
216
LEU
217
A
LYS
218
n
217
LYS
218
A
LEU
219
n
218
LEU
219
A
SER
220
n
219
SER
220
A
MSE
221
n
220
MSE
221
A
GLY
222
n
221
GLY
222
A
MSE
223
n
222
MSE
223
A
SER
224
n
223
SER
224
A
ALA
225
n
224
ALA
225
A
ASP
226
n
225
ASP
226
A
PHE
227
n
226
PHE
227
A
ARG
228
n
227
ARG
228
A
GLU
229
n
228
GLU
229
A
ALA
230
n
229
ALA
230
A
ILE
231
n
230
ILE
231
A
ARG
232
n
231
ARG
232
A
GLN
233
n
232
GLN
233
A
GLY
234
n
233
GLY
234
A
THR
235
n
234
THR
235
A
ALA
236
n
235
ALA
236
A
GLU
237
n
236
GLU
237
A
VAL
238
n
237
VAL
238
A
ARG
239
n
238
ARG
239
A
ILE
240
n
239
ILE
240
A
GLY
241
n
240
GLY
241
A
THR
242
n
241
THR
242
A
ASP
243
n
242
ASP
243
A
ILE
244
n
243
ILE
244
A
PHE
245
n
244
PHE
245
A
GLY
246
n
245
GLY
246
A
n
246
247
A
n
247
248
A
n
248
249
A
n
249
250
A
n
250
251
A
n
251
252
A
n
252
253
A
n
253
254
A
n
254
255
A
n
255
256
A
n
256
257
A
author_defined_assembly
1
monomeric
A
MSE
181
SELENOMETHIONINE
A
MSE
180
MET
A
MSE
221
SELENOMETHIONINE
A
MSE
220
MET
A
MSE
223
SELENOMETHIONINE
A
MSE
222
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
43
A
O
LEU
42
A
N
VAL
238
A
N
VAL
237
A
O
PHE
67
A
O
PHE
66
A
N
LYS
87
A
N
LYS
86
A
O
TRP
88
A
O
TRP
87
A
N
TYR
109
A
N
TYR
108
A
O
LYS
218
A
O
LYS
217
A
N
LEU
180
A
N
LEU
179
A
O
LYS
176
A
O
LYS
175
A
N
ILE
137
A
N
ILE
136
1
A
CG
HIS
147
A
CG
HIS
146
1
Y
1
A
ND1
HIS
147
A
ND1
HIS
146
1
Y
1
A
CD2
HIS
147
A
CD2
HIS
146
1
Y
1
A
CE1
HIS
147
A
CE1
HIS
146
1
Y
1
A
NE2
HIS
147
A
NE2
HIS
146
1
Y
1
A
CG
ASP
149
A
CG
ASP
148
1
Y
1
A
OD1
ASP
149
A
OD1
ASP
148
1
Y
1
A
OD2
ASP
149
A
OD2
ASP
148
1
Y
1
A
SER
2
A
SER
1
1
Y
1
A
HIS
34
A
HIS
33
1
Y
1
A
VAL
35
A
VAL
34
1
Y
1
A
ASN
36
A
ASN
35
1
Y
1
A
GLU
37
A
GLU
36
1
Y
1
A
ASN
38
A
ASN
37
1
Y
1
A
ALA
39
A
ALA
38
1
Y
1
A
SER
40
A
SER
39
1
Y
1
A
ASN
187
A
ASN
186
1
Y
1
A
VAL
188
A
VAL
187
1
Y
1
A
SER
189
A
SER
188
1
Y
1
A
HIS
190
A
HIS
189
1
Y
1
A
GLU
191
A
GLU
190
1
Y
1
A
ASP
192
A
ASP
191
1
Y
1
A
SER
193
A
SER
192
1
Y
1
A
LYS
194
A
LYS
193
1
Y
1
A
GLU
195
A
GLU
194
1
Y
1
A
ALA
247
A
ALA
246
1
Y
1
A
ARG
248
A
ARG
247
1
Y
1
A
PRO
249
A
PRO
248
1
Y
1
A
PRO
250
A
PRO
249
1
Y
1
A
LYS
251
A
LYS
250
1
Y
1
A
ASN
252
A
ASN
251
1
Y
1
A
GLU
253
A
GLU
252
1
Y
1
A
ALA
254
A
ALA
253
1
Y
1
A
ARG
255
A
ARG
254
1
Y
1
A
ILE
256
A
ILE
255
1
Y
1
A
ILE
257
A
ILE
256
1
Y
1
19.53
1.40
123.60
143.13
A
A
A
CD
NE
CZ
ARG
ARG
ARG
23
23
23
N
1
A
ASN
107
-92.83
32.74
1
A
GLN
131
-140.11
59.41
1
A
GLU
148
-122.95
-121.57
1
A
MSE
223
-117.45
-165.00
1
A
ASP
226
-141.36
16.53
0.245
0.196
2.00
12.5
1060
19399
RANDOM
1
FREE R
MAD
0.17
0.16
2.00
12.5
204
2031
15
0
1812
0.015
0.020
0.035
0.040
0.039
0.050
19.00
2.000
50.000
1CT5
20510
0.000
0.067
1
7.7000
6.500
97.5
0.253
2.00
2.07
1
94.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHASES
phasing
SHARP
refinement
REFMAC
PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET)
CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL
1
N
N
2
N
N
3
N
N
A
GLU
9
A
GLU
8
HELX_P
A
ASN
32
A
ASN
31
1
1
24
A
ALA
53
A
ALA
52
HELX_P
A
HIS
62
A
HIS
61
1
2
10
A
VAL
72
A
VAL
71
HELX_P
A
LEU
81
A
LEU
80
1
3
10
A
CYS
99
A
CYS
98
HELX_P
A
LYS
104
A
LYS
103
1
4
6
A
LEU
117
A
LEU
116
HELX_P
A
GLN
131
A
GLN
130
1
5
15
A
GLU
157
A
GLU
156
HELX_P
A
PHE
167
A
PHE
166
1
6
11
A
ARG
197
A
ARG
196
HELX_P
A
PHE
213
A
PHE
212
1
7
17
A
PHE
227
A
PHE
226
HELX_P
A
ARG
232
A
ARG
231
1
8
6
covale
1.382
one
A
LYS
49
A
NZ
LYS
48
1_555
A
PLP
258
B
C4A
PLP
1_555
covale
1.313
both
A
LEU
180
A
C
LEU
179
1_555
A
MSE
181
A
N
MSE
180
1_555
covale
1.353
both
A
MSE
181
A
C
MSE
180
1_555
A
THR
182
A
N
THR
181
1_555
covale
1.321
both
A
SER
220
A
C
SER
219
1_555
A
MSE
221
A
N
MSE
220
1_555
covale
1.347
both
A
MSE
221
A
C
MSE
220
1_555
A
GLY
222
A
N
GLY
221
1_555
covale
1.349
both
A
GLY
222
A
C
GLY
221
1_555
A
MSE
223
A
N
MSE
222
1_555
covale
1.365
both
A
MSE
223
A
C
MSE
222
1_555
A
SER
224
A
N
SER
223
1_555
STRUCTURAL GENOMICS
TIM BARREL, YEAST, PYRIDOXAL-5'-PHOSPHATE, SELENOMETHIONINE, MAD, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
YBD6_YEAST
UNP
1
P38197
2
257
1CT5
2
257
P38197
A
1
1
256
2
3
3
parallel
parallel
parallel
parallel
parallel
A
LEU
43
A
LEU
42
A
VAL
46
A
VAL
45
A
GLU
237
A
GLU
236
A
ILE
240
A
ILE
239
A
GLU
66
A
GLU
65
A
GLU
69
A
GLU
68
A
LYS
87
A
LYS
86
A
PHE
90
A
PHE
89
A
LEU
108
A
LEU
107
A
VAL
111
A
VAL
110
A
LYS
218
A
LYS
217
A
SER
220
A
SER
219
A
ILE
175
A
ILE
174
A
MSE
181
A
MSE
180
A
ILE
137
A
ILE
136
A
GLN
142
A
GLN
141
RESIDUES INTERACTING WITH THE CO-FACTOR PLP
Author
5
BINDING SITE FOR RESIDUE PLP A 258
A
PLP
258
Software
13
A
LYS
49
A
LYS
48
5
1_555
A
ASN
70
A
ASN
69
5
1_555
A
SER
224
A
SER
223
5
1_555
A
ARG
239
A
ARG
238
5
1_555
A
THR
242
A
THR
241
5
1_555
A
LYS
49
A
LYS
48
13
1_555
A
ASN
70
A
ASN
69
13
1_555
A
ILE
91
A
ILE
90
13
1_555
A
MSE
223
A
MSE
222
13
1_555
A
SER
224
A
SER
223
13
1_555
A
ARG
239
A
ARG
238
13
1_555
A
GLY
241
A
GLY
240
13
1_555
A
THR
242
A
THR
241
13
1_555
A
HOH
292
C
HOH
13
1_555
A
HOH
332
C
HOH
13
1_555
A
HOH
351
C
HOH
13
1_555
A
HOH
355
C
HOH
13
1_555
A
HOH
425
C
HOH
13
1_555
19
P 21 21 21