0.024752
0.000000
0.000000
0.000000
0.011891
0.000000
0.000000
0.000000
0.007446
0.00000
0.00000
0.00000
Langedijk, A.C.
Spinelli, S.
Anguille, C.
Hermans, P.
Nederlof, J.
Butenandt, J.
Honegger, A.
Cambillau, C.
Pluckthun, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.400
84.100
134.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C20 H28 O3
316.435
TRAZEOLIDE
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
292
855
869
10.1006/jmbi.1999.3101
10525411
Insight into odorant perception: the crystal structure and binding characteristics of antibody fragments directed against the musk odorant traseolide.
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.0
1
IMAGE PLATE
1995-11-05
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
23391.602
PROTEIN (ANTIBODY FRAGMENT FAB)
1
man
polymer
23841.791
PROTEIN (ANTIBODY FRAGMENT FAB)
1
man
polymer
316.435
TRAZEOLIDE
1
syn
non-polymer
18.015
water
114
nat
water
no
no
DIELTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFKGLIYHGTNLEDGVPSRFSGSGSGADYSLTISSLES
EDFADYYCVQYVQFPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL
NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEA
DIELTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFKGLIYHGTNLEDGVPSRFSGSGSGADYSLTISSLES
EDFADYYCVQYVQFPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL
NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEA
A
polypeptide(L)
no
no
QVQLQESGPGLVKPSQSLSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYISYSGSTSYSPSLKSRISLTRDTSKNQFF
LQLNSVTTEDTATYYCVTSLTWLLRRKRSYWGQGTTVTVSSASTKGPSVYPLAPGSKAAASMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPE
QVQLQESGPGLVKPSQSLSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYISYSGSTSYSPSLKSRISLTRDTSKNQFF
LQLNSVTTEDTATYYCVTSLTWLLRRKRSYWGQGTTVTVSSASTKGPSVYPLAPGSKAAASMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPE
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
house mouse
Mus
sample
10090
Mus musculus
1
2.41
49.05
VAPOR DIFFUSION, HANGING DROP
4.0
PEG 8000, SODIUM ACETATE, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 20.0K
293.0
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
exptl_crystal_grow
repository
Initial release
Version format compliance
Version format compliance
Advisory
Experimental preparation
1
0
1999-08-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
1
4
2018-02-28
_exptl_crystal_grow.temp
RCSB
Y
RCSB
1999-07-20
REL
TRZ
TRAZEOLIDE
HOH
water
TRZ
121
3
TRZ
TRZ
215
A
HOH
1
4
HOH
HOH
216
A
HOH
2
4
HOH
HOH
217
A
HOH
3
4
HOH
HOH
218
A
HOH
4
4
HOH
HOH
219
A
HOH
5
4
HOH
HOH
220
A
HOH
7
4
HOH
HOH
221
A
HOH
9
4
HOH
HOH
222
A
HOH
10
4
HOH
HOH
223
A
HOH
12
4
HOH
HOH
224
A
HOH
13
4
HOH
HOH
225
A
HOH
14
4
HOH
HOH
226
A
HOH
16
4
HOH
HOH
227
A
HOH
22
4
HOH
HOH
228
A
HOH
23
4
HOH
HOH
229
A
HOH
24
4
HOH
HOH
230
A
HOH
25
4
HOH
HOH
231
A
HOH
26
4
HOH
HOH
232
A
HOH
27
4
HOH
HOH
233
A
HOH
28
4
HOH
HOH
234
A
HOH
33
4
HOH
HOH
235
A
HOH
34
4
HOH
HOH
236
A
HOH
35
4
HOH
HOH
237
A
HOH
36
4
HOH
HOH
238
A
HOH
38
4
HOH
HOH
239
A
HOH
39
4
HOH
HOH
240
A
HOH
40
4
HOH
HOH
241
A
HOH
41
4
HOH
HOH
242
A
HOH
42
4
HOH
HOH
243
A
HOH
43
4
HOH
HOH
244
A
HOH
45
4
HOH
HOH
245
A
HOH
46
4
HOH
HOH
246
A
HOH
48
4
HOH
HOH
247
A
HOH
49
4
HOH
HOH
248
A
HOH
50
4
HOH
HOH
249
A
HOH
54
4
HOH
HOH
250
A
HOH
90
4
HOH
HOH
251
A
HOH
96
4
HOH
HOH
252
A
HOH
97
4
HOH
HOH
253
A
HOH
98
4
HOH
HOH
254
A
HOH
99
4
HOH
HOH
255
A
HOH
100
4
HOH
HOH
256
A
HOH
101
4
HOH
HOH
257
A
HOH
103
4
HOH
HOH
258
A
HOH
107
4
HOH
HOH
259
A
HOH
110
4
HOH
HOH
260
A
HOH
113
4
HOH
HOH
261
A
HOH
120
4
HOH
HOH
262
A
HOH
15
4
HOH
HOH
263
A
HOH
6
4
HOH
HOH
514
B
HOH
8
4
HOH
HOH
515
B
HOH
11
4
HOH
HOH
516
B
HOH
17
4
HOH
HOH
517
B
HOH
18
4
HOH
HOH
518
B
HOH
19
4
HOH
HOH
519
B
HOH
20
4
HOH
HOH
520
B
HOH
21
4
HOH
HOH
521
B
HOH
29
4
HOH
HOH
522
B
HOH
30
4
HOH
HOH
523
B
HOH
31
4
HOH
HOH
524
B
HOH
32
4
HOH
HOH
525
B
HOH
44
4
HOH
HOH
526
B
HOH
47
4
HOH
HOH
527
B
HOH
51
4
HOH
HOH
528
B
HOH
52
4
HOH
HOH
529
B
HOH
53
4
HOH
HOH
530
B
HOH
55
4
HOH
HOH
531
B
HOH
56
4
HOH
HOH
532
B
HOH
57
4
HOH
HOH
533
B
HOH
58
4
HOH
HOH
534
B
HOH
59
4
HOH
HOH
535
B
HOH
60
4
HOH
HOH
536
B
HOH
61
4
HOH
HOH
537
B
HOH
62
4
HOH
HOH
538
B
HOH
63
4
HOH
HOH
539
B
HOH
64
4
HOH
HOH
540
B
HOH
65
4
HOH
HOH
541
B
HOH
66
4
HOH
HOH
542
B
HOH
67
4
HOH
HOH
543
B
HOH
68
4
HOH
HOH
544
B
HOH
69
4
HOH
HOH
545
B
HOH
70
4
HOH
HOH
546
B
HOH
71
4
HOH
HOH
547
B
HOH
72
4
HOH
HOH
548
B
HOH
73
4
HOH
HOH
549
B
HOH
74
4
HOH
HOH
550
B
HOH
75
4
HOH
HOH
551
B
HOH
76
4
HOH
HOH
552
B
HOH
77
4
HOH
HOH
553
B
HOH
78
4
HOH
HOH
554
B
HOH
79
4
HOH
HOH
555
B
HOH
80
4
HOH
HOH
556
B
HOH
81
4
HOH
HOH
557
B
HOH
82
4
HOH
HOH
558
B
HOH
83
4
HOH
HOH
559
B
HOH
84
4
HOH
HOH
560
B
HOH
85
4
HOH
HOH
561
B
HOH
86
4
HOH
HOH
562
B
HOH
87
4
HOH
HOH
563
B
HOH
88
4
HOH
HOH
564
B
HOH
89
4
HOH
HOH
565
B
HOH
91
4
HOH
HOH
566
B
HOH
92
4
HOH
HOH
567
B
HOH
93
4
HOH
HOH
568
B
HOH
94
4
HOH
HOH
569
B
HOH
95
4
HOH
HOH
570
B
HOH
102
4
HOH
HOH
571
B
HOH
104
4
HOH
HOH
572
B
HOH
105
4
HOH
HOH
573
B
HOH
106
4
HOH
HOH
574
B
HOH
108
4
HOH
HOH
575
B
HOH
109
4
HOH
HOH
576
B
HOH
112
4
HOH
HOH
577
B
HOH
114
4
HOH
HOH
578
B
HOH
115
4
HOH
HOH
579
B
ASP
1
n
1
ASP
1
A
ILE
2
n
2
ILE
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
SER
10
n
10
SER
10
A
MET
11
n
11
MET
11
A
SER
12
n
12
SER
12
A
VAL
13
n
13
VAL
13
A
SER
14
n
14
SER
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
THR
18
n
18
THR
18
A
VAL
19
n
19
VAL
19
A
SER
20
n
20
SER
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
CYS
23
n
23
CYS
23
A
HIS
24
n
24
HIS
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
SER
31
n
31
SER
31
A
ASN
32
n
32
ASN
32
A
ILE
33
n
33
ILE
33
A
GLY
34
n
34
GLY
34
A
TRP
35
n
35
TRP
35
A
LEU
36
n
36
L
LEU
36
A
GLN
37
n
37
GLN
37
A
GLN
38
n
38
GLN
38
A
LYS
39
n
39
LYS
39
A
PRO
40
n
40
PRO
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
SER
43
n
43
SER
43
A
PHE
44
n
44
PHE
44
A
LYS
45
n
45
LYS
45
A
GLY
46
n
46
GLY
46
A
LEU
47
n
47
LEU
47
A
ILE
48
n
48
ILE
48
A
TYR
49
n
49
TYR
49
A
HIS
50
n
50
HIS
50
A
GLY
51
n
51
GLY
51
A
THR
52
n
52
THR
52
A
ASN
53
n
53
ASN
53
A
LEU
54
n
54
LEU
54
A
GLU
55
n
55
L
GLU
55
A
ASP
56
n
56
ASP
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
PRO
59
n
59
PRO
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
PHE
62
n
62
PHE
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
SER
65
n
65
SER
65
A
GLY
66
n
66
GLY
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
ALA
69
n
69
ALA
69
A
ASP
70
n
70
ASP
70
A
TYR
71
n
71
TYR
71
A
SER
72
n
72
SER
72
A
LEU
73
n
73
LEU
73
A
THR
74
n
74
THR
74
A
ILE
75
n
75
ILE
75
A
SER
76
n
76
SER
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
GLU
79
n
79
GLU
79
A
SER
80
n
80
SER
80
A
GLU
81
n
81
GLU
81
A
ASP
82
n
82
ASP
82
A
PHE
83
n
83
PHE
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TYR
86
n
86
TYR
86
A
TYR
87
n
87
TYR
87
A
CYS
88
n
88
CYS
88
A
VAL
89
n
89
VAL
89
A
GLN
90
n
90
GLN
90
A
TYR
91
n
91
L
TYR
91
A
VAL
92
n
92
VAL
92
A
GLN
93
n
93
GLN
93
A
PHE
94
n
94
PHE
94
A
PRO
95
n
95
PRO
95
A
PHE
96
n
96
L
PHE
96
A
THR
97
n
97
THR
97
A
PHE
98
n
98
L
PHE
98
A
GLY
99
n
99
GLY
99
A
SER
100
n
100
SER
100
A
GLY
101
n
101
GLY
101
A
THR
102
n
102
THR
102
A
LYS
103
n
103
LYS
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
ILE
106
n
106
ILE
106
A
LYS
107
n
107
LYS
107
A
ARG
108
n
108
ARG
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
ALA
111
n
111
ALA
111
A
ALA
112
n
112
ALA
112
A
PRO
113
n
113
PRO
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
SER
116
n
116
SER
116
A
ILE
117
n
117
ILE
117
A
PHE
118
n
118
PHE
118
A
PRO
119
n
119
PRO
119
A
PRO
120
n
120
PRO
120
A
SER
121
n
121
SER
121
A
SER
122
n
122
SER
122
A
GLU
123
n
123
GLU
123
A
GLN
124
n
124
GLN
124
A
LEU
125
n
125
LEU
125
A
THR
126
n
126
THR
126
A
SER
127
n
127
SER
127
A
GLY
128
n
128
GLY
128
A
GLY
129
n
129
GLY
129
A
ALA
130
n
130
ALA
130
A
SER
131
n
131
SER
131
A
VAL
132
n
132
VAL
132
A
VAL
133
n
133
VAL
133
A
CYS
134
n
134
CYS
134
A
PHE
135
n
135
PHE
135
A
LEU
136
n
136
LEU
136
A
ASN
137
n
137
ASN
137
A
ASN
138
n
138
ASN
138
A
PHE
139
n
139
PHE
139
A
TYR
140
n
140
TYR
140
A
PRO
141
n
141
PRO
141
A
LYS
142
n
142
LYS
142
A
ASP
143
n
143
ASP
143
A
ILE
144
n
144
ILE
144
A
ASN
145
n
145
ASN
145
A
VAL
146
n
146
VAL
146
A
LYS
147
n
147
LYS
147
A
TRP
148
n
148
TRP
148
A
LYS
149
n
149
LYS
149
A
ILE
150
n
150
ILE
150
A
ASP
151
n
151
ASP
151
A
GLY
152
n
152
GLY
152
A
SER
153
n
153
SER
153
A
GLU
154
n
154
GLU
154
A
ARG
155
n
155
ARG
155
A
GLN
156
n
156
GLN
156
A
ASN
157
n
157
ASN
157
A
GLY
158
n
158
GLY
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
ASN
161
n
161
ASN
161
A
SER
162
n
162
SER
162
A
TRP
163
n
163
TRP
163
A
THR
164
n
164
THR
164
A
ASP
165
n
165
ASP
165
A
GLN
166
n
166
GLN
166
A
ASP
167
n
167
ASP
167
A
SER
168
n
168
SER
168
A
LYS
169
n
169
LYS
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
THR
172
n
172
THR
172
A
TYR
173
n
173
TYR
173
A
SER
174
n
174
SER
174
A
MET
175
n
175
MET
175
A
SER
176
n
176
SER
176
A
SER
177
n
177
SER
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
THR
180
n
180
THR
180
A
LEU
181
n
181
LEU
181
A
THR
182
n
182
THR
182
A
LYS
183
n
183
LYS
183
A
ASP
184
n
184
ASP
184
A
GLU
185
n
185
GLU
185
A
TYR
186
n
186
TYR
186
A
GLU
187
n
187
GLU
187
A
ARG
188
n
188
ARG
188
A
HIS
189
n
189
HIS
189
A
ASN
190
n
190
ASN
190
A
SER
191
n
191
SER
191
A
TYR
192
n
192
TYR
192
A
THR
193
n
193
THR
193
A
CYS
194
n
194
CYS
194
A
GLU
195
n
195
GLU
195
A
ALA
196
n
196
ALA
196
A
THR
197
n
197
THR
197
A
HIS
198
n
198
HIS
198
A
LYS
199
n
199
LYS
199
A
THR
200
n
200
THR
200
A
SER
201
n
201
SER
201
A
THR
202
n
202
THR
202
A
SER
203
n
203
SER
203
A
PRO
204
n
204
PRO
204
A
ILE
205
n
205
ILE
205
A
VAL
206
n
206
VAL
206
A
LYS
207
n
207
LYS
207
A
SER
208
n
208
SER
208
A
PHE
209
n
209
PHE
209
A
ASN
210
n
210
ASN
210
A
ARG
211
n
211
ARG
211
A
ASN
212
n
212
ASN
212
A
GLU
213
n
213
GLU
213
A
ALA
214
n
214
ALA
214
A
GLN
301
n
1
GLN
301
B
VAL
302
n
2
VAL
302
B
GLN
303
n
3
GLN
303
B
LEU
304
n
4
LEU
304
B
GLN
305
n
5
GLN
305
B
GLU
306
n
6
GLU
306
B
SER
307
n
7
SER
307
B
GLY
308
n
8
GLY
308
B
PRO
309
n
9
PRO
309
B
GLY
310
n
10
GLY
310
B
LEU
311
n
11
LEU
311
B
VAL
312
n
12
VAL
312
B
LYS
313
n
13
LYS
313
B
PRO
314
n
14
PRO
314
B
SER
315
n
15
SER
315
B
GLN
316
n
16
GLN
316
B
SER
317
n
17
SER
317
B
LEU
318
n
18
LEU
318
B
SER
319
n
19
SER
319
B
LEU
320
n
20
LEU
320
B
THR
321
n
21
THR
321
B
CYS
322
n
22
CYS
322
B
THR
323
n
23
THR
323
B
VAL
324
n
24
VAL
324
B
THR
325
n
25
THR
325
B
GLY
326
n
26
GLY
326
B
TYR
327
n
27
TYR
327
B
SER
328
n
28
SER
328
B
ILE
329
n
29
ILE
329
B
THR
330
n
30
THR
330
B
SER
331
n
31
X
SER
331
B
ASP
331
n
32
ASP
331
B
TYR
332
n
33
TYR
332
B
ALA
33
n
34
H
ALA
33
B
TRP
334
n
35
TRP
334
B
ASN
35
n
36
H
ASN
35
B
TRP
336
n
37
TRP
336
B
ILE
337
n
38
ILE
337
B
ARG
338
n
39
ARG
338
B
GLN
339
n
40
GLN
339
B
PHE
340
n
41
PHE
340
B
PRO
341
n
42
PRO
341
B
GLY
342
n
43
GLY
342
B
ASN
343
n
44
ASN
343
B
LYS
344
n
45
LYS
344
B
LEU
345
n
46
LEU
345
B
GLU
346
n
47
GLU
346
B
TRP
47
n
48
H
TRP
47
B
MET
348
n
49
MET
348
B
GLY
349
n
50
GLY
349
B
TYR
50
n
51
H
TYR
50
B
ILE
351
n
52
ILE
351
B
SER
352
n
53
SER
352
B
TYR
353
n
54
TYR
353
B
SER
354
n
55
SER
354
B
GLY
355
n
56
GLY
355
B
SER
356
n
57
SER
356
B
THR
357
n
58
THR
357
B
SER
358
n
59
SER
358
B
TYR
359
n
60
TYR
359
B
SER
360
n
61
SER
360
B
PRO
361
n
62
PRO
361
B
SER
362
n
63
SER
362
B
LEU
363
n
64
LEU
363
B
LYS
364
n
65
LYS
364
B
SER
365
n
66
SER
365
B
ARG
366
n
67
ARG
366
B
ILE
367
n
68
ILE
367
B
SER
368
n
69
SER
368
B
LEU
369
n
70
LEU
369
B
THR
370
n
71
THR
370
B
ARG
371
n
72
ARG
371
B
ASP
372
n
73
ASP
372
B
THR
373
n
74
THR
373
B
SER
374
n
75
SER
374
B
LYS
375
n
76
LYS
375
B
ASN
376
n
77
ASN
376
B
GLN
377
n
78
GLN
377
B
PHE
378
n
79
PHE
378
B
PHE
379
n
80
PHE
379
B
LEU
380
n
81
LEU
380
B
GLN
381
n
82
GLN
381
B
LEU
382
n
83
LEU
382
B
ASN
382
n
84
A
ASN
382
B
SER
382
n
85
B
SER
382
B
VAL
382
n
86
C
VAL
382
B
THR
383
n
87
THR
383
B
THR
384
n
88
THR
384
B
GLU
385
n
89
GLU
385
B
ASP
386
n
90
ASP
386
B
THR
387
n
91
THR
387
B
ALA
388
n
92
ALA
388
B
THR
389
n
93
THR
389
B
TYR
390
n
94
TYR
390
B
TYR
391
n
95
TYR
391
B
CYS
392
n
96
CYS
392
B
VAL
393
n
97
VAL
393
B
THR
394
n
98
THR
394
B
SER
95
n
99
H
SER
95
B
LEU
96
n
100
H
LEU
96
B
THR
397
n
101
THR
397
B
TRP
398
n
102
TRP
398
B
LEU
399
n
103
LEU
399
B
LEU
400
n
104
LEU
400
B
ARG
400
n
105
A
ARG
400
B
ARG
400
n
106
B
ARG
400
B
LYS
400
n
107
C
LYS
400
B
ARG
400
n
108
D
ARG
400
B
SER
401
n
109
SER
401
B
TYR
402
n
110
TYR
402
B
TRP
103
n
111
H
TRP
103
B
GLY
404
n
112
GLY
404
B
GLN
405
n
113
GLN
405
B
GLY
406
n
114
GLY
406
B
THR
407
n
115
THR
407
B
THR
408
n
116
THR
408
B
VAL
409
n
117
VAL
409
B
THR
410
n
118
THR
410
B
VAL
411
n
119
VAL
411
B
SER
412
n
120
SER
412
B
SER
413
n
121
SER
413
B
ALA
414
n
122
ALA
414
B
SER
415
n
123
SER
415
B
THR
416
n
124
THR
416
B
LYS
417
n
125
LYS
417
B
GLY
418
n
126
GLY
418
B
PRO
419
n
127
PRO
419
B
SER
420
n
128
SER
420
B
VAL
421
n
129
VAL
421
B
TYR
422
n
130
TYR
422
B
PRO
423
n
131
PRO
423
B
LEU
424
n
132
LEU
424
B
ALA
425
n
133
ALA
425
B
PRO
426
n
134
PRO
426
B
GLY
427
n
135
GLY
427
B
SER
428
n
136
SER
428
B
LYS
429
n
137
LYS
429
B
ALA
430
n
138
ALA
430
B
ALA
432
n
139
ALA
432
B
ALA
433
n
140
ALA
433
B
SER
434
n
141
SER
434
B
MET
435
n
142
MET
435
B
VAL
436
n
143
VAL
436
B
THR
437
n
144
THR
437
B
LEU
438
n
145
LEU
438
B
GLY
439
n
146
GLY
439
B
CYS
440
n
147
CYS
440
B
LEU
441
n
148
LEU
441
B
VAL
442
n
149
VAL
442
B
LYS
443
n
150
LYS
443
B
GLY
444
n
151
GLY
444
B
TYR
445
n
152
TYR
445
B
PHE
446
n
153
PHE
446
B
PRO
447
n
154
PRO
447
B
GLU
448
n
155
GLU
448
B
PRO
449
n
156
PRO
449
B
VAL
450
n
157
VAL
450
B
THR
451
n
158
THR
451
B
VAL
452
n
159
VAL
452
B
THR
453
n
160
THR
453
B
TRP
454
n
161
TRP
454
B
ASN
455
n
162
ASN
455
B
SER
456
n
163
SER
456
B
GLY
457
n
164
GLY
457
B
SER
458
n
165
SER
458
B
LEU
459
n
166
LEU
459
B
SER
460
n
167
SER
460
B
SER
461
n
168
SER
461
B
GLY
462
n
169
GLY
462
B
VAL
463
n
170
VAL
463
B
HIS
464
n
171
HIS
464
B
THR
465
n
172
THR
465
B
PHE
466
n
173
PHE
466
B
PRO
467
n
174
PRO
467
B
ALA
468
n
175
ALA
468
B
VAL
469
n
176
VAL
469
B
LEU
470
n
177
LEU
470
B
GLN
471
n
178
GLN
471
B
SER
472
n
179
SER
472
B
ASP
473
n
180
ASP
473
B
LEU
474
n
181
LEU
474
B
TYR
475
n
182
TYR
475
B
THR
476
n
183
THR
476
B
LEU
477
n
184
LEU
477
B
SER
478
n
185
SER
478
B
SER
479
n
186
SER
479
B
SER
480
n
187
SER
480
B
VAL
481
n
188
VAL
481
B
THR
482
n
189
THR
482
B
VAL
483
n
190
VAL
483
B
PRO
484
n
191
PRO
484
B
SER
485
n
192
SER
485
B
SER
486
n
193
SER
486
B
PRO
487
n
194
PRO
487
B
ARG
488
n
195
ARG
488
B
PRO
489
n
196
PRO
489
B
SER
490
n
197
SER
490
B
GLU
491
n
198
GLU
491
B
THR
492
n
199
THR
492
B
VAL
493
n
200
VAL
493
B
THR
494
n
201
THR
494
B
CYS
495
n
202
CYS
495
B
ASN
496
n
203
ASN
496
B
VAL
497
n
204
VAL
497
B
ALA
498
n
205
ALA
498
B
HIS
499
n
206
HIS
499
B
PRO
500
n
207
PRO
500
B
ALA
501
n
208
ALA
501
B
SER
502
n
209
SER
502
B
SER
503
n
210
SER
503
B
THR
504
n
211
THR
504
B
LYS
505
n
212
LYS
505
B
VAL
506
n
213
VAL
506
B
ASP
507
n
214
ASP
507
B
LYS
508
n
215
LYS
508
B
LYS
509
n
216
LYS
509
B
ILE
510
n
217
ILE
510
B
VAL
511
n
218
VAL
511
B
PRO
512
n
219
PRO
512
B
GLU
513
n
220
GLU
513
B
author_and_software_defined_assembly
PISA
2
dimeric
4630
-26
19410
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
7
A
O
SER
7
A
N
THR
22
A
N
THR
22
A
O
CYS
23
A
O
CYS
23
A
N
TYR
71
A
N
TYR
71
A
N
THR
74
A
N
THR
74
A
O
SER
63
A
O
SER
63
A
O
ASN
53
A
O
ASN
53
A
N
TYR
49
A
N
TYR
49
A
N
LEU
47
A
N
LEU
47
A
O
TRP
35
A
O
TRP
35
A
N
GLN
38
A
N
GLN
38
A
O
ASP
85
A
O
ASP
85
A
N
GLN
90
A
N
GLN
90
A
O
THR
97
A
O
THR
97
A
O
ASN
53
A
O
ASN
53
A
N
TYR
49
A
N
TYR
49
A
N
LEU
47
A
N
LEU
47
A
O
TRP
35
A
O
TRP
35
A
N
GLN
38
A
N
GLN
38
A
O
ASP
85
A
O
ASP
85
A
N
TYR
86
A
N
TYR
86
A
O
THR
102
A
O
THR
102
A
N
GLU
105
A
N
GLU
105
A
O
MET
11
A
O
MET
11
A
N
PHE
118
A
N
PHE
118
A
O
VAL
133
A
O
VAL
133
A
N
PHE
139
A
N
PHE
139
A
O
TYR
173
A
O
TYR
173
A
O
THR
178
A
O
THR
178
A
N
LEU
160
A
N
LEU
160
A
N
ARG
155
A
N
ARG
155
A
O
TRP
148
A
O
TRP
148
A
O
LYS
149
A
O
LYS
149
A
N
THR
193
A
N
THR
193
A
N
ALA
196
A
N
ALA
196
A
O
ILE
205
A
O
ILE
205
B
O
SER
307
B
O
SER
7
B
N
THR
321
B
N
THR
21
B
N
CYS
322
B
N
CYS
22
B
O
PHE
378
B
O
PHE
79
B
N
GLN
381
B
N
GLN
82
B
O
SER
368
B
O
SER
69
B
N
VAL
312
B
N
VAL
12
B
O
THR
410
B
O
THR
118
B
N
VAL
409
B
N
VAL
117
B
O
ALA
388
B
O
ALA
92
B
O
VAL
393
B
O
VAL
97
H
B
N
ASN
35
B
N
ASN
36
B
O
ARG
338
B
O
ARG
39
B
N
GLU
346
B
N
GLU
47
H
B
N
TYR
50
B
N
TYR
51
B
O
SER
358
B
O
SER
59
B
N
LEU
424
B
N
LEU
132
B
O
GLY
439
B
O
GLY
146
B
O
TYR
445
B
O
TYR
152
B
N
TYR
475
B
N
TYR
182
B
O
SER
480
B
O
SER
187
B
N
HIS
464
B
N
HIS
171
B
N
LEU
424
B
N
LEU
132
B
O
GLY
439
B
O
GLY
146
B
O
TYR
445
B
O
TYR
152
B
N
TYR
475
B
N
TYR
182
B
O
THR
476
B
O
THR
183
B
N
VAL
469
B
N
VAL
176
B
O
THR
453
B
O
THR
160
B
N
ASN
496
B
N
ASN
203
B
O
HIS
499
B
O
HIS
206
B
N
THR
504
B
N
THR
211
1
B
B
CB
N
ASN
SER
455
456
1.63
1
B
B
C
N
ALA
ALA
430
432
4.39
1
B
B
C
N
ASN
SER
455
456
4.23
1
15.26
2.40
120.20
135.46
A
A
A
CA
C
O
PRO
PRO
PRO
40
40
40
N
1
-13.89
2.00
116.20
102.31
A
A
A
CA
C
N
PRO
PRO
GLY
40
40
41
Y
1
-15.20
2.10
122.30
107.10
A
A
A
C
N
CA
PRO
GLY
GLY
40
41
41
Y
1
15.14
2.50
121.70
136.84
A
A
A
C
N
CA
GLY
LYS
LYS
41
42
42
Y
1
24.76
2.70
111.00
135.76
A
A
A
N
CA
C
LYS
LYS
LYS
42
42
42
N
1
22.63
2.10
120.10
142.73
B
B
B
CA
C
O
ALA
ALA
ALA
430
430
430
N
1
20.47
2.00
110.40
130.87
B
B
B
CB
CA
C
ASN
ASN
ASN
455
455
455
N
1
17.23
1.80
110.60
127.83
B
B
B
N
CA
CB
ASN
ASN
ASN
455
455
455
N
1
-72.38
2.20
113.40
41.02
B
B
B
CA
CB
CG
ASN
ASN
ASN
455
455
455
N
1
-25.26
2.70
111.00
85.74
B
B
B
N
CA
C
ASN
ASN
ASN
455
455
455
N
1
-95.32
2.10
120.10
24.78
B
B
B
CA
C
O
ASN
ASN
ASN
455
455
455
N
1
31.54
1.50
110.50
142.04
B
B
B
N
CA
CB
SER
SER
SER
456
456
456
N
1
-28.57
2.70
111.00
82.43
B
B
B
N
CA
C
SER
SER
SER
456
456
456
N
1
-18.82
2.20
117.20
98.38
B
B
B
CA
C
N
GLY
GLY
SER
457
457
458
Y
1
16.36
1.60
122.70
139.05
B
B
B
O
C
N
GLY
GLY
SER
457
457
458
Y
1
-11.48
1.50
110.50
99.02
B
B
B
N
CA
CB
SER
SER
SER
458
458
458
N
1
B
B
CA
C
ALA
ALA
430
430
0.241
0.026
1.525
1.766
N
1
B
B
C
O
ALA
ALA
430
430
-0.416
0.019
1.229
0.813
N
1
B
B
CA
CB
ASN
ASN
455
455
0.180
0.026
1.527
1.707
N
1
B
B
CB
CG
ASN
ASN
455
455
2.460
0.023
1.506
3.966
N
1
B
B
CA
C
ASN
ASN
455
455
0.266
0.026
1.525
1.791
N
1
B
B
C
O
ASN
ASN
455
455
2.488
0.019
1.229
3.717
N
1
B
B
CA
CB
SER
SER
456
456
-0.238
0.015
1.525
1.287
N
1
B
B
N
CA
GLY
GLY
457
457
-0.091
0.015
1.456
1.365
N
1
B
B
N
CA
SER
SER
458
458
0.177
0.020
1.459
1.636
N
1
B
B
CA
CB
SER
SER
458
458
0.104
0.015
1.525
1.629
N
1
B
B
CA
C
SER
SER
458
458
-0.164
0.026
1.525
1.361
N
1
A
SER
26
-68.57
11.18
1
A
LYS
42
-29.88
-159.93
1
A
LEU
47
-96.17
-62.34
1
A
SER
77
59.37
84.11
1
A
ALA
84
-158.84
-155.59
1
A
ASN
138
52.46
72.17
1
A
LYS
169
-90.39
-65.30
1
B
SER
315
86.60
-11.67
1
B
ILE
329
-62.94
4.11
1
B
TYR
332
54.16
159.92
1
B
ASN
343
75.70
-3.03
B
1
B
SER
382
39.33
56.71
1
B
LEU
400
-87.85
-151.07
1
B
SER
428
87.63
25.26
1
B
ALA
433
-118.79
-163.09
1
B
ALA
501
-46.13
-17.99
0.27
0.205
0.205
2.60
12.0
1575
15749
RANDOM
1
1.000
2.60
12.0
114
3459
23
0
3322
0.010
30.00
2.600
20.000
1C12
15749
1.000
0.13
1
12.0000
5.000
88.0
0.3
2.60
2.70
1.50
55.0
refinement
X-PLOR
ANTIBODY FRAGMENT FAB
INSIGHT IN ODORANT PERCEPTION: THE CRYSTAL STRUCTURE AND BINDING CHARACTERISTICS OF ANTIBODY FRAGMENTS DIRECTED AGAINST THE MUSK ODORANT TRASEOLIDE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
The biological assembly is a Fab monomer
A
GLU
79
A
GLU
79
HELX_P
A
PHE
83
A
PHE
83
5
1
5
A
SER
121
A
SER
121
HELX_P
A
GLY
128
A
GLY
128
1
2
8
A
LYS
183
A
LYS
183
HELX_P
A
GLU
187
A
GLU
187
1
3
5
B
PRO
361
B
PRO
62
HELX_P
B
LYS
364
B
LYS
65
5
4
4
B
THR
383
B
THR
87
HELX_P
B
THR
387
B
THR
91
5
5
5
B
SER
456
B
SER
163
HELX_P
B
SER
458
B
SER
165
5
6
3
B
SER
486
B
SER
193
HELX_P
B
GLU
491
B
GLU
198
1
7
6
B
PRO
500
B
PRO
207
HELX_P
B
SER
503
B
SER
210
5
8
4
disulf
2.026
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
88
1_555
disulf
2.027
A
CYS
134
A
SG
CYS
134
1_555
A
CYS
194
A
SG
CYS
194
1_555
disulf
2.027
B
CYS
322
B
SG
CYS
22
1_555
B
CYS
392
B
SG
CYS
96
1_555
disulf
2.021
B
CYS
440
B
SG
CYS
147
1_555
B
CYS
495
B
SG
CYS
202
1_555
IMMUNE SYSTEM
ANTIBODY-ANTIGEN COMPLEX, SCFV FRAGMENT, CDRH3, MUSK ODORANT, ODORANT SPECIFICITY, IMMUNE SYSTEM
A
SER
7
A
SER
7
1
A
PRO
8
A
PRO
8
-0.50
A
PHE
94
A
PHE
94
1
A
PRO
95
A
PRO
95
2.30
A
TYR
140
A
TYR
140
1
A
PRO
141
A
PRO
141
-0.20
B
PHE
446
B
PHE
153
1
B
PRO
447
B
PRO
154
1.49
B
GLU
448
B
GLU
155
1
B
PRO
449
B
PRO
156
-8.37
B
ARG
488
B
ARG
195
1
B
PRO
489
B
PRO
196
4.72
1C12
PDB
1
1C12
1C12
PDB
2
1C12
1
214
1C12
1
214
1C12
A
1
1
214
301
513
1C12
301
513
1C12
B
2
1
220
4
5
6
4
4
4
6
4
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
SER
7
A
SER
7
A
VAL
19
A
VAL
19
A
ALA
25
A
ALA
25
A
ASP
70
A
ASP
70
A
ILE
75
A
ILE
75
A
PHE
62
A
PHE
62
A
SER
67
A
SER
67
A
ASN
53
A
ASN
53
A
LEU
54
A
LEU
54
A
PHE
44
A
PHE
44
A
TYR
49
A
TYR
49
A
ILE
33
A
ILE
33
A
GLN
38
A
GLN
38
A
ASP
85
A
ASP
85
A
GLN
90
A
GLN
90
A
THR
97
A
THR
97
A
PHE
98
A
PHE
98
L
A
ASN
53
A
ASN
53
A
LEU
54
A
LEU
54
A
PHE
44
A
PHE
44
A
TYR
49
A
TYR
49
A
ILE
33
A
ILE
33
A
GLN
38
A
GLN
38
A
ASP
85
A
ASP
85
A
GLN
90
A
GLN
90
A
THR
102
A
THR
102
A
ILE
106
A
ILE
106
A
SER
10
A
SER
10
A
VAL
13
A
VAL
13
A
THR
114
A
THR
114
A
PHE
118
A
PHE
118
A
GLY
129
A
GLY
129
A
PHE
139
A
PHE
139
A
TYR
173
A
TYR
173
A
THR
182
A
THR
182
A
VAL
159
A
VAL
159
A
TRP
163
A
TRP
163
A
SER
153
A
SER
153
A
ARG
155
A
ARG
155
A
ASN
145
A
ASN
145
A
ILE
150
A
ILE
150
A
SER
191
A
SER
191
A
THR
197
A
THR
197
A
ILE
205
A
ILE
205
A
ASN
210
A
ASN
210
B
GLN
303
B
GLN
3
B
SER
307
B
SER
7
B
LEU
318
B
LEU
18
B
THR
325
B
THR
25
B
GLN
377
B
GLN
78
B
LEU
382
B
LEU
83
B
ILE
367
B
ILE
68
B
ASP
372
B
ASP
73
B
LEU
311
B
LEU
11
B
VAL
312
B
VAL
12
B
THR
407
B
THR
115
B
VAL
411
B
VAL
119
B
ALA
388
B
ALA
92
B
THR
394
B
THR
98
B
TRP
334
B
TRP
35
B
GLN
339
B
GLN
40
B
LEU
345
B
LEU
46
B
ILE
351
B
ILE
52
B
THR
357
B
THR
58
B
TYR
359
B
TYR
60
B
SER
420
B
SER
128
B
LEU
424
B
LEU
132
B
MET
435
B
MET
142
B
TYR
445
B
TYR
152
B
LEU
474
B
LEU
181
B
PRO
484
B
PRO
191
B
VAL
463
B
VAL
170
B
THR
465
B
THR
172
B
SER
420
B
SER
128
B
LEU
424
B
LEU
132
B
MET
435
B
MET
142
B
TYR
445
B
TYR
152
B
LEU
474
B
LEU
181
B
PRO
484
B
PRO
191
B
VAL
469
B
VAL
176
B
GLN
471
B
GLN
178
B
THR
451
B
THR
158
B
TRP
454
B
TRP
161
B
THR
494
B
THR
201
B
HIS
499
B
HIS
206
B
THR
504
B
THR
211
B
LYS
509
B
LYS
216
BINDING SITE FOR RESIDUE TRZ A 215
Software
8
A
TYR
91
A
TYR
91
L
8
1_555
A
PHE
96
A
PHE
96
L
8
1_555
A
HOH
243
D
HOH
8
1_555
A
HOH
262
D
HOH
8
1_555
B
ASN
35
B
ASN
36
H
8
1_555
B
TRP
47
B
TRP
48
H
8
1_555
B
LEU
96
B
LEU
100
H
8
1_555
B
VAL
393
B
VAL
97
8
1_555
18
P 2 21 21