0.006345
0.000000
0.000000
0.000000
0.011669
0.000000
0.000000
0.000000
0.012674
0.00000
0.00000
0.00000
CIS PROLINE - PRO 138
CIS PROLINE - PRO 195
Miyahara, I.
Hirotsu, K.
Hayashi, H.
Kagamiyama, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
157.600
85.700
78.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C4 H4 O4
116.072
MALEIC ACID
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H13 N2 O5 P
248.173
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
PYRIDOXAMINE-5'-PHOSPHATE
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
C
N
231
N
O
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
S
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
Y
285
N
N
Y
286
N
C
N
287
N
C
Y
288
N
C
N
289
N
O
Y
290
N
C
N
291
N
C
N
292
N
N
Y
293
N
C
Y
294
N
C
N
295
N
C
N
296
N
O
N
297
N
P
N
298
N
O
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
R
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
N
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
Z
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
doub
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
JA
J.Biochem.(Tokyo)
JOBIAO
0418
0021-924X
116
1001
1012
7896726
X-ray crystallographic study of pyridoxamine 5'-phosphate-type aspartate aminotransferases from Escherichia coli in three forms.
1994
To be Published
0353
X-Ray Crystallographic Study of Pyridoxal 5'-Phosphate-Type Aspartate Aminotransferase from Esherichia Coli in Open and Closed Form
10.2210/pdb1amr/pdb
pdb_00001amr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
43619.215
ASPARTATE AMINOTRANSFERASE
2.6.1.1
1
man
polymer
248.173
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
116.072
MALEIC ACID
1
syn
non-polymer
18.015
water
264
nat
water
no
no
MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE
LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR
MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE
LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR
MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
3.05
59.71
pdbx_database_status
struct_conf
struct_conf_type
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Derived calculations
Other
Data collection
Database references
Derived calculations
1
0
1994-09-30
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-02-07
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-07-01
REL
PMP
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
MAE
MALEIC ACID
HOH
water
PMP
413
2
PMP
PMP
413
A
MAE
414
3
MAE
MAE
414
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
462
4
HOH
HOH
462
A
HOH
463
4
HOH
HOH
463
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
467
4
HOH
HOH
467
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
477
4
HOH
HOH
477
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
481
4
HOH
HOH
481
A
HOH
482
4
HOH
HOH
482
A
HOH
483
4
HOH
HOH
483
A
HOH
484
4
HOH
HOH
484
A
HOH
485
4
HOH
HOH
485
A
HOH
486
4
HOH
HOH
486
A
HOH
487
4
HOH
HOH
487
A
HOH
488
4
HOH
HOH
488
A
HOH
489
4
HOH
HOH
489
A
HOH
490
4
HOH
HOH
490
A
HOH
491
4
HOH
HOH
491
A
HOH
492
4
HOH
HOH
492
A
HOH
493
4
HOH
HOH
493
A
HOH
494
4
HOH
HOH
494
A
HOH
495
4
HOH
HOH
495
A
HOH
496
4
HOH
HOH
496
A
HOH
497
4
HOH
HOH
497
A
HOH
498
4
HOH
HOH
498
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
MET
5
n
1
MET
5
A
PHE
6
n
2
PHE
6
A
GLU
7
n
3
GLU
7
A
ASN
8
n
4
ASN
8
A
ILE
9
n
5
ILE
9
A
THR
10
n
6
THR
10
A
ALA
11
n
7
ALA
11
A
ALA
12
n
8
ALA
12
A
PRO
13
n
9
PRO
13
A
ALA
14
n
10
ALA
14
A
ASP
15
n
11
ASP
15
A
PRO
16
n
12
PRO
16
A
ILE
17
n
13
ILE
17
A
LEU
18
n
14
LEU
18
A
GLY
19
n
15
GLY
19
A
LEU
20
n
16
LEU
20
A
ALA
21
n
17
ALA
21
A
ASP
22
n
18
ASP
22
A
LEU
23
n
19
LEU
23
A
PHE
24
n
20
PHE
24
A
ARG
25
n
21
ARG
25
A
ALA
26
n
22
ALA
26
A
ASP
27
n
23
ASP
27
A
GLU
28
n
24
GLU
28
A
ARG
29
n
25
ARG
29
A
PRO
30
n
26
PRO
30
A
GLY
31
n
27
GLY
31
A
LYS
32
n
28
LYS
32
A
ILE
33
n
29
ILE
33
A
ASN
34
n
30
ASN
34
A
LEU
35
n
31
LEU
35
A
GLY
36
n
32
GLY
36
A
ILE
37
n
33
ILE
37
A
GLY
38
n
34
GLY
38
A
VAL
39
n
35
VAL
39
A
TYR
40
n
36
TYR
40
A
LYS
41
n
37
LYS
41
A
ASP
42
n
38
ASP
42
A
GLU
43
n
39
GLU
43
A
THR
44
n
40
THR
44
A
GLY
45
n
41
GLY
45
A
LYS
46
n
42
LYS
46
A
THR
47
n
43
THR
47
A
PRO
48
n
44
PRO
48
A
VAL
49
n
45
VAL
49
A
LEU
50
n
46
LEU
50
A
THR
51
n
47
THR
51
A
SER
52
n
48
SER
52
A
VAL
53
n
49
VAL
53
A
LYS
54
n
50
LYS
54
A
LYS
55
n
51
LYS
55
A
ALA
56
n
52
ALA
56
A
GLU
57
n
53
GLU
57
A
GLN
58
n
54
GLN
58
A
TYR
59
n
55
TYR
59
A
LEU
60
n
56
LEU
60
A
LEU
61
n
57
LEU
61
A
GLU
62
n
58
GLU
62
A
ASN
63
n
59
ASN
63
A
GLU
64
n
60
GLU
64
A
THR
66
n
61
THR
66
A
THR
67
n
62
THR
67
A
LYS
68
n
63
LYS
68
A
ASN
69
n
64
ASN
69
A
TYR
70
n
65
TYR
70
A
LEU
71
n
66
LEU
71
A
GLY
72
n
67
GLY
72
A
ILE
73
n
68
ILE
73
A
ASP
74
n
69
ASP
74
A
GLY
75
n
70
GLY
75
A
ILE
76
n
71
ILE
76
A
PRO
77
n
72
PRO
77
A
GLU
78
n
73
GLU
78
A
PHE
79
n
74
PHE
79
A
GLY
80
n
75
GLY
80
A
ARG
81
n
76
ARG
81
A
CYS
82
n
77
CYS
82
A
THR
83
n
78
THR
83
A
GLN
84
n
79
GLN
84
A
GLU
85
n
80
GLU
85
A
LEU
86
n
81
LEU
86
A
LEU
87
n
82
LEU
87
A
PHE
88
n
83
PHE
88
A
GLY
89
n
84
GLY
89
A
LYS
90
n
85
LYS
90
A
GLY
91
n
86
GLY
91
A
SER
92
n
87
SER
92
A
ALA
93
n
88
ALA
93
A
LEU
94
n
89
LEU
94
A
ILE
95
n
90
ILE
95
A
ASN
96
n
91
ASN
96
A
ASP
97
n
92
ASP
97
A
LYS
98
n
93
LYS
98
A
ARG
99
n
94
ARG
99
A
ALA
100
n
95
ALA
100
A
ARG
101
n
96
ARG
101
A
THR
102
n
97
THR
102
A
ALA
103
n
98
ALA
103
A
GLN
104
n
99
GLN
104
A
THR
105
n
100
THR
105
A
PRO
106
n
101
PRO
106
A
GLY
107
n
102
GLY
107
A
GLY
108
n
103
GLY
108
A
THR
109
n
104
THR
109
A
GLY
110
n
105
GLY
110
A
ALA
111
n
106
ALA
111
A
LEU
112
n
107
LEU
112
A
ARG
113
n
108
ARG
113
A
VAL
114
n
109
VAL
114
A
ALA
115
n
110
ALA
115
A
ALA
116
n
111
ALA
116
A
ASP
117
n
112
ASP
117
A
PHE
118
n
113
PHE
118
A
LEU
119
n
114
LEU
119
A
ALA
120
n
115
ALA
120
A
LYS
121
n
116
LYS
121
A
ASN
122
n
117
ASN
122
A
THR
123
n
118
THR
123
A
SER
124
n
119
SER
124
A
VAL
125
n
120
VAL
125
A
LYS
126
n
121
LYS
126
A
ARG
129
n
122
ARG
129
A
VAL
133
n
123
VAL
133
A
TRP
134
n
124
TRP
134
A
VAL
135
n
125
VAL
135
A
SER
136
n
126
SER
136
A
ASN
137
n
127
ASN
137
A
PRO
138
n
128
PRO
138
A
SER
139
n
129
SER
139
A
TRP
140
n
130
TRP
140
A
PRO
141
n
131
PRO
141
A
ASN
142
n
132
ASN
142
A
HIS
143
n
133
HIS
143
A
LYS
144
n
134
LYS
144
A
SER
145
n
135
SER
145
A
VAL
146
n
136
VAL
146
A
PHE
147
n
137
PHE
147
A
ASN
148
n
138
ASN
148
A
SER
149
n
139
SER
149
A
ALA
150
n
140
ALA
150
A
GLY
151
n
141
GLY
151
A
LEU
152
n
142
LEU
152
A
GLU
154
n
143
GLU
154
A
VAL
155
n
144
VAL
155
A
ARG
156
n
145
ARG
156
A
GLU
157
n
146
GLU
157
A
TYR
158
n
147
TYR
158
A
ALA
159
n
148
ALA
159
A
TYR
160
n
149
TYR
160
A
TYR
161
n
150
TYR
161
A
ASP
162
n
151
ASP
162
A
ALA
163
n
152
ALA
163
A
GLU
164
n
153
GLU
164
A
ASN
165
n
154
ASN
165
A
HIS
166
n
155
HIS
166
A
THR
167
n
156
THR
167
A
LEU
168
n
157
LEU
168
A
ASP
169
n
158
ASP
169
A
PHE
170
n
159
PHE
170
A
ASP
171
n
160
ASP
171
A
ALA
172
n
161
ALA
172
A
LEU
173
n
162
LEU
173
A
ILE
174
n
163
ILE
174
A
ASN
175
n
164
ASN
175
A
SER
176
n
165
SER
176
A
LEU
177
n
166
LEU
177
A
ASN
178
n
167
ASN
178
A
GLU
179
n
168
GLU
179
A
ALA
180
n
169
ALA
180
A
GLN
181
n
170
GLN
181
A
ALA
182
n
171
ALA
182
A
GLY
183
n
172
GLY
183
A
ASP
184
n
173
ASP
184
A
VAL
185
n
174
VAL
185
A
VAL
186
n
175
VAL
186
A
LEU
187
n
176
LEU
187
A
PHE
188
n
177
PHE
188
A
HIS
189
n
178
HIS
189
A
GLY
190
n
179
GLY
190
A
CYS
191
n
180
CYS
191
A
CYS
192
n
181
CYS
192
A
HIS
193
n
182
HIS
193
A
ASN
194
n
183
ASN
194
A
PRO
195
n
184
PRO
195
A
THR
196
n
185
THR
196
A
GLY
197
n
186
GLY
197
A
ILE
198
n
187
ILE
198
A
ASP
199
n
188
ASP
199
A
PRO
200
n
189
PRO
200
A
THR
201
n
190
THR
201
A
LEU
202
n
191
LEU
202
A
GLU
203
n
192
GLU
203
A
GLN
204
n
193
GLN
204
A
TRP
205
n
194
TRP
205
A
GLN
206
n
195
GLN
206
A
THR
207
n
196
THR
207
A
LEU
208
n
197
LEU
208
A
ALA
209
n
198
ALA
209
A
GLN
210
n
199
GLN
210
A
LEU
211
n
200
LEU
211
A
SER
212
n
201
SER
212
A
VAL
213
n
202
VAL
213
A
GLU
214
n
203
GLU
214
A
LYS
215
n
204
LYS
215
A
GLY
216
n
205
GLY
216
A
TRP
217
n
206
TRP
217
A
LEU
218
n
207
LEU
218
A
PRO
219
n
208
PRO
219
A
LEU
220
n
209
LEU
220
A
PHE
221
n
210
PHE
221
A
ASP
222
n
211
ASP
222
A
PHE
223
n
212
PHE
223
A
ALA
224
n
213
ALA
224
A
TYR
225
n
214
TYR
225
A
GLN
226
n
215
GLN
226
A
GLY
227
n
216
GLY
227
A
PHE
228
n
217
PHE
228
A
ALA
229
n
218
ALA
229
A
ARG
230
n
219
ARG
230
A
GLY
231
n
220
GLY
231
A
LEU
233
n
221
LEU
233
A
GLU
234
n
222
GLU
234
A
GLU
235
n
223
GLU
235
A
ASP
236
n
224
ASP
236
A
ALA
237
n
225
ALA
237
A
GLU
238
n
226
GLU
238
A
GLY
239
n
227
GLY
239
A
LEU
240
n
228
LEU
240
A
ARG
241
n
229
ARG
241
A
ALA
242
n
230
ALA
242
A
PHE
243
n
231
PHE
243
A
ALA
244
n
232
ALA
244
A
ALA
245
n
233
ALA
245
A
MET
246
n
234
MET
246
A
HIS
247
n
235
HIS
247
A
LYS
248
n
236
LYS
248
A
GLU
249
n
237
GLU
249
A
LEU
250
n
238
LEU
250
A
ILE
251
n
239
ILE
251
A
VAL
252
n
240
VAL
252
A
ALA
253
n
241
ALA
253
A
SER
254
n
242
SER
254
A
SER
255
n
243
SER
255
A
TYR
256
n
244
TYR
256
A
SER
257
n
245
SER
257
A
LYS
258
n
246
LYS
258
A
ASN
259
n
247
ASN
259
A
PHE
260
n
248
PHE
260
A
GLY
261
n
249
GLY
261
A
LEU
262
n
250
LEU
262
A
TYR
263
n
251
TYR
263
A
ASN
264
n
252
ASN
264
A
GLU
265
n
253
GLU
265
A
ARG
266
n
254
ARG
266
A
VAL
267
n
255
VAL
267
A
GLY
268
n
256
GLY
268
A
ALA
269
n
257
ALA
269
A
CYS
270
n
258
CYS
270
A
THR
271
n
259
THR
271
A
LEU
272
n
260
LEU
272
A
VAL
273
n
261
VAL
273
A
ALA
274
n
262
ALA
274
A
ALA
275
n
263
ALA
275
A
ASP
276
n
264
ASP
276
A
SER
277
n
265
SER
277
A
GLU
278
n
266
GLU
278
A
THR
279
n
267
THR
279
A
VAL
280
n
268
VAL
280
A
ASP
281
n
269
ASP
281
A
ARG
282
n
270
ARG
282
A
ALA
283
n
271
ALA
283
A
PHE
284
n
272
PHE
284
A
SER
285
n
273
SER
285
A
GLN
286
n
274
GLN
286
A
MET
287
n
275
MET
287
A
LYS
288
n
276
LYS
288
A
ALA
289
n
277
ALA
289
A
ALA
290
n
278
ALA
290
A
ILE
291
n
279
ILE
291
A
ARG
292
n
280
ARG
292
A
ALA
293
n
281
ALA
293
A
ASN
294
n
282
ASN
294
A
TYR
295
n
283
TYR
295
A
SER
296
n
284
SER
296
A
ASN
297
n
285
ASN
297
A
PRO
298
n
286
PRO
298
A
PRO
299
n
287
PRO
299
A
ALA
300
n
288
ALA
300
A
HIS
301
n
289
HIS
301
A
GLY
302
n
290
GLY
302
A
ALA
303
n
291
ALA
303
A
SER
304
n
292
SER
304
A
VAL
305
n
293
VAL
305
A
VAL
306
n
294
VAL
306
A
ALA
307
n
295
ALA
307
A
THR
308
n
296
THR
308
A
ILE
309
n
297
ILE
309
A
LEU
310
n
298
LEU
310
A
SER
311
n
299
SER
311
A
ASN
312
n
300
ASN
312
A
ASP
313
n
301
ASP
313
A
ALA
314
n
302
ALA
314
A
LEU
315
n
303
LEU
315
A
ARG
316
n
304
ARG
316
A
ALA
317
n
305
ALA
317
A
ILE
318
n
306
ILE
318
A
TRP
319
n
307
TRP
319
A
GLU
320
n
308
GLU
320
A
GLN
321
n
309
GLN
321
A
GLU
322
n
310
GLU
322
A
LEU
323
n
311
LEU
323
A
THR
324
n
312
THR
324
A
ASP
325
n
313
ASP
325
A
MET
326
n
314
MET
326
A
ARG
327
n
315
ARG
327
A
GLN
328
n
316
GLN
328
A
ARG
329
n
317
ARG
329
A
ILE
330
n
318
ILE
330
A
GLN
331
n
319
GLN
331
A
ARG
332
n
320
ARG
332
A
MET
333
n
321
MET
333
A
ARG
334
n
322
ARG
334
A
GLN
335
n
323
GLN
335
A
LEU
336
n
324
LEU
336
A
PHE
337
n
325
PHE
337
A
VAL
338
n
326
VAL
338
A
ASN
339
n
327
ASN
339
A
THR
340
n
328
THR
340
A
LEU
341
n
329
LEU
341
A
GLN
342
n
330
GLN
342
A
GLU
343
n
331
GLU
343
A
LYS
344
n
332
LYS
344
A
GLY
345
n
333
GLY
345
A
ALA
346
n
334
ALA
346
A
ASN
347
n
335
ASN
347
A
ARG
348
n
336
ARG
348
A
ASP
349
n
337
ASP
349
A
PHE
350
n
338
PHE
350
A
SER
351
n
339
SER
351
A
PHE
352
n
340
PHE
352
A
ILE
353
n
341
ILE
353
A
ILE
354
n
342
ILE
354
A
LYS
355
n
343
LYS
355
A
GLN
356
n
344
GLN
356
A
ASN
357
n
345
ASN
357
A
GLY
358
n
346
GLY
358
A
MET
359
n
347
MET
359
A
PHE
360
n
348
PHE
360
A
SER
361
n
349
SER
361
A
PHE
362
n
350
PHE
362
A
SER
363
n
351
SER
363
A
GLY
364
n
352
GLY
364
A
LEU
365
n
353
LEU
365
A
THR
366
n
354
THR
366
A
LYS
367
n
355
LYS
367
A
GLU
368
n
356
GLU
368
A
GLN
369
n
357
GLN
369
A
VAL
370
n
358
VAL
370
A
LEU
371
n
359
LEU
371
A
ARG
372
n
360
ARG
372
A
LEU
373
n
361
LEU
373
A
ARG
374
n
362
ARG
374
A
GLU
375
n
363
GLU
375
A
GLU
376
n
364
GLU
376
A
PHE
377
n
365
PHE
377
A
GLY
378
n
366
GLY
378
A
VAL
379
n
367
VAL
379
A
TYR
380
n
368
TYR
380
A
ALA
381
n
369
ALA
381
A
VAL
382
n
370
VAL
382
A
ALA
383
n
371
ALA
383
A
SER
384
n
372
SER
384
A
GLY
385
n
373
GLY
385
A
ARG
386
n
374
ARG
386
A
VAL
387
n
375
VAL
387
A
ASN
388
n
376
ASN
388
A
VAL
389
n
377
VAL
389
A
ALA
390
n
378
ALA
390
A
GLY
391
n
379
GLY
391
A
MET
392
n
380
MET
392
A
THR
393
n
381
THR
393
A
PRO
394
n
382
PRO
394
A
ASP
395
n
383
ASP
395
A
ASN
396
n
384
ASN
396
A
MET
397
n
385
MET
397
A
ALA
398
n
386
ALA
398
A
PRO
399
n
387
PRO
399
A
LEU
400
n
388
LEU
400
A
CYS
401
n
389
CYS
401
A
GLU
402
n
390
GLU
402
A
ALA
403
n
391
ALA
403
A
ILE
404
n
392
ILE
404
A
VAL
405
n
393
VAL
405
A
ALA
406
n
394
ALA
406
A
VAL
408
n
395
VAL
408
A
LEU
409
n
396
LEU
409
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
8280
-18
28870
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
9.48
1.50
119.30
128.78
A
A
A
C
N
CA
ARG
PRO
PRO
29
30
30
Y
1
A
ILE
17
-101.28
-62.11
1
A
PRO
30
-15.03
-74.16
1
A
SER
92
21.02
123.56
1
A
TYR
160
-141.70
-60.63
1
A
ALA
229
-95.04
-70.95
1
A
TYR
263
-26.91
-69.63
1
A
ARG
266
55.65
82.58
1
A
ASN
294
-108.91
-74.78
1
A
SER
296
74.36
-63.54
1
A
ASN
347
-74.55
29.78
0.1940000
0.1940000
2.1
10.0
22634
1
3.
2.1
10.0
264
3357
24
0
3069
0.009
1.787
model building
X-PLOR
refinement
X-PLOR
refinement
TOM
phasing
X-PLOR
refinement
TOM/FRODO
X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS
1
N
N
2
N
N
3
N
N
4
N
N
THE FUNCTIONAL DIMER CAN BE GENERATED BY APPLYING THE
SYMMETRY OPERATOR (X, -Y, -Z) TO THE ATOMIC COORDINATES
PRESENTED IN THIS ENTRY.
A
LEU
18
A
LEU
14
HELX_P
A
PHE
24
A
PHE
20
1
HA
7
A
THR
51
A
THR
47
HELX_P
A
ASN
63
A
ASN
59
1
HB
13
A
PRO
77
A
PRO
72
HELX_P
A
PHE
88
A
PHE
83
1
HC
12
A
ALA
93
A
ALA
88
HELX_P
A
ASN
96
A
ASN
91
1
HD
4
A
GLY
107
A
GLY
102
HELX_P
A
ASN
122
A
ASN
117
1
HE
16
A
ASN
142
A
ASN
132
HELX_P
A
SER
149
A
SER
139
1
HF
8
A
PHE
170
A
PHE
159
HELX_P
A
LEU
177
A
LEU
166
1
HG
8
A
LEU
202
A
LEU
191
HELX_P
A
LYS
215
A
LYS
204
1
HH
14
A
LEU
233
A
LEU
221
HELX_P
A
MET
246
A
MET
234
1
HI
14
A
SER
277
A
SER
265
HELX_P
A
ARG
292
A
ARG
280
1
HJ
16
A
ALA
300
A
ALA
288
HELX_P
A
SER
311
A
SER
299
1
HK
12
A
ASP
313
A
ASP
301
HELX_P
A
LYS
344
A
LYS
332
1
HL
32
A
PHE
352
A
PHE
340
HELX_P
A
LYS
355
A
LYS
343
1
HM
4
A
LYS
367
A
LYS
355
HELX_P
A
PHE
377
A
PHE
365
1
HN
11
A
MET
397
A
MET
385
HELX_P
A
VAL
405
A
VAL
393
1
HO
9
TRANSFERASE(AMINOTRANSFERASE)
TRANSFERASE(AMINOTRANSFERASE)
A
ASN
137
A
ASN
127
1
A
PRO
138
A
PRO
128
0.22
A
ASN
194
A
ASN
183
1
A
PRO
195
A
PRO
184
0.87
AAT_ECOLI
UNP
1
1
P00509
MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE
LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR
MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
1
396
1AMR
5
409
P00509
A
1
1
396
2
7
2
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LYS
32
A
LYS
28
A
ASN
34
A
ASN
30
A
VAL
379
A
VAL
367
A
ALA
381
A
ALA
369
A
ALA
100
A
ALA
95
A
THR
105
A
THR
100
A
GLY
268
A
GLY
256
A
VAL
273
A
VAL
261
A
LEU
250
A
LEU
238
A
SER
255
A
SER
243
A
LEU
218
A
LEU
207
A
PHE
223
A
PHE
212
A
ASP
184
A
ASP
173
A
HIS
189
A
HIS
178
A
ARG
129
A
ARG
122
A
ASN
137
A
ASN
127
A
GLU
154
A
GLU
143
A
ALA
159
A
ALA
148
A
PHE
360
A
PHE
348
A
PHE
362
A
PHE
350
A
GLY
385
A
GLY
373
A
ASN
388
A
ASN
376
BINDING SITE FOR RESIDUE PMP A 413
A
PMP
413
Software
13
BINDING SITE FOR RESIDUE MAE A 414
A
MAE
414
Software
8
A
TYR
70
A
TYR
65
13
4_555
A
GLY
108
A
GLY
103
13
1_555
A
THR
109
A
THR
104
13
1_555
A
TRP
140
A
TRP
130
13
1_555
A
ASN
194
A
ASN
183
13
1_555
A
ASP
222
A
ASP
211
13
1_555
A
TYR
225
A
TYR
214
13
1_555
A
SER
255
A
SER
243
13
1_555
A
SER
257
A
SER
245
13
1_555
A
LYS
258
A
LYS
246
13
1_555
A
ARG
266
A
ARG
254
13
1_555
A
MAE
414
C
MAE
13
1_555
A
HOH
458
D
HOH
13
1_555
A
ILE
17
A
ILE
13
8
1_555
A
GLY
38
A
GLY
34
8
1_555
A
TRP
140
A
TRP
130
8
1_555
A
ASN
194
A
ASN
183
8
1_555
A
ARG
292
A
ARG
280
8
4_555
A
ARG
386
A
ARG
374
8
1_555
A
PMP
413
B
PMP
8
1_555
A
HOH
458
D
HOH
8
1_555
20
C 2 2 21