4K8G

Crystal structure of D-Mannonate dehydratase from Novosphingobium aromaticivorans mutant (V161A, R163A, K165G, L166A, Y167G, Y168A, E169G)

Structural Biology Knowledgebase: 4K8G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.141

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K8G

Classification: METAL BINDING PROTEIN

Total Structure Weight: 47087.01

Macromolecule Entities
Molecule Chains Length Organism Details
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein A 422 Novosphingobium aromaticivorans EC#: 4.2.1.8 IUBMB
Mutation: V161A, R163A, K165G, L166A, Y167G, Y168A, E169G
Gene Name(s): manD Saro_3675

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.141
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 125.77 α = 90.00
b = 125.77 β = 90.00
c = 119.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-18
  • Released Date: 2013-05-22
  • Deposition author(s): Lukk, T., Wichelecki, D., Gerlt, J.A., Nair, S.K.

Revision History

No revisions since initial release