4JV3

Crystal structure of beta-ketoacyl synthase from Brucella melitensis in complex with platencin

Structural Biology Knowledgebase: 4JV3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 4JV3

Classification: Transferase / Antibiotic

Total Structure Weight: 46149.21

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-ketoacyl synthase A 428 Brucella abortus EC#: 2.3.1.41 IUBMB
Gene Name(s): fabB BAB1_2173
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
N32
Query on N32

A 2,4-dihydroxy-3-({3-[(2S,4aS,8S,8aR)-8-methyl- 3-methylidene-7-oxo-1,3,4,7,8,8a-hexahydro- 2H-2,4a-ethanonaphthalen-8-yl]propanoyl}amino)benzoic acid
Platencin (Synonym)
C24 H27 N O6
DWUHGPPFFABTIY-RLWZQHMASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSU
Query on CSU
A L-PEPTIDE LINKING C3 H7 N O5 S2 CYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 78.16 α = 90.00
b = 84.48 β = 120.81
c = 74.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-25
  • Released Date: 2013-05-22
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

  • 2013-06-05
    Type: Entry title | Details: --