4JCY

Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OR operator complex

Structural Biology Knowledgebase: 4JCY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 4JCY

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 36148.82


Macromolecule Entities
Molecule Chains Length Organism Details
Csp231I C protein A, B 98 Citrobacter sp. rfl231 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*AP*AP*CP*TP*AP*AP*GP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*CP*AP*A)-3') C 21 synthetic
DNA (5'-D(*TP*TP*GP*CP*TP*AP*AP*GP*AP*TP*TP*TP*TP*CP*TP*TP*AP*GP*TP*TP*T)-3') D 21 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.147
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.34 α = 90.00
b = 62.34 β = 90.00
c = 158.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-22
  • Released Date: 2014-02-26
  • Deposition author(s): Shevtsov, M.B., Streeter, S.D., Thresh, S.J., Mcgeehan, J.E., Kneale, G.G.

Revision History

  • 2015-04-15
    Type: Citation | Details: Citation update
  • 2015-02-11
    Type: Citation | Details: citation update