4J7G

Crystal structure of EvaA, a 2,3-dehydratase in complex with dTDP-fucose and dTDP-rhamnose

Structural Biology Knowledgebase: 4J7G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 4J7G

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 108196.13

Macromolecule Entities
Molecule Chains Length Organism Details
EvaA 2,3-dehydratase A, B 471 Amycolatopsis orientalis Mutation: R381A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRH
Query on TRH

A, B 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE
C16 H26 N2 O15 P2
ZOSQFDVXNQFKBY-CGAXJHMRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1JB
Query on 1JB

A, B [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin- 1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl- phosphoryl] [(2R,3R,4S,5R,6R)-6-methyl-3,4,5- tris(oxidanyl)oxan-2-yl] hydrogen phosphate
dTDP-fucose (Synonym)
C16 H26 N2 O15 P2
ZOSQFDVXNQFKBY-FQLHZTMTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.172
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.83 α = 90.00
b = 108.22 β = 90.00
c = 110.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-13
  • Released Date: 2013-05-22
  • Deposition author(s): Holden, H.M., Kubiak, R.L., Thoden, J.B.

Revision History

  • 2013-12-25
    Type: Citation | Details: Citation update
  • 2013-11-20
    Type: Citation | Details: Citation update