4IXM

Crystal structure of Zn(II)-bound YjiA GTPase from E. coli

Structural Biology Knowledgebase: 4IXM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 4IXM

Classification: HYDROLASE

Total Structure Weight: 71912.80

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized GTP-binding protein YjiA A, B 318 Escherichia coli Gene Name(s): yjiA b4352 JW5790
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.220
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.29 α = 90.00
b = 68.87 β = 104.09
c = 77.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-26
  • Released Date: 2013-02-27
  • Deposition author(s): Jost, M., Ryan, K.S., Turo, K.E., Drennan, C.L.

Revision History

  • 2014-03-05
    Type: Citation | Details: Citation update
  • 2014-01-01
    Type: Citation | Details: Citation update
  • 2013-07-24
    Type: Citation | Details: Citation update
  • 2013-07-03
    Type: Citation | Details: Citation update
  • 2013-06-12
    Type: Citation | Details: Citation update
  • 2013-03-20
    Type: Citation | Details: Citation update