4HT4

Molecular Basis of Vancomycin Resistance Transfer in Staphylococcus aureus

Structural Biology Knowledgebase: 4HT4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 4HT4

Classification: Hydrolase / DNA

Total Structure Weight: 32124.92


Macromolecule Entities
Molecule Chains Length Organism Details
Nicking enzyme A 195 Staphylococcus aureus Mutation: Y25F
Gene Name(s): nes
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (28-MER) B 28 synthetic oriT DNA hairpin

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.229
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 63.23 α = 90.00
b = 63.23 β = 90.00
c = 313.76 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-31
  • Released Date: 2013-01-30
  • Deposition author(s): Edwards, J.S.

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update
  • 2013-02-13
    Type: Citation | Details: Citation update