4H9S

Complex structure 6 of DAXX/H3.3(sub7)/H4

Structural Biology Knowledgebase: 4H9S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 4H9S

Classification: DNA BINDING PROTEIN / APOPTOSIS

Total Structure Weight: 100603.91

Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3.3 A, B 135 Homo sapiens Mutation: A75C, F84W, S96A, Y99F, G102A, A111T, M120F
Gene Name(s): H3F3A Gene View H3.3A H3F3 PP781 H3F3B Gene View H3.3B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 C, D 83 Homo sapiens Gene Name(s): HIST1H4A Gene View H4/A H4FA HIST1H4B Gene View H4/I H4FI HIST1H4C Gene View H4/G H4FG HIST1H4D Gene View H4/B H4FB HIST1H4E Gene View H4/J H4FJ HIST1H4F Gene View H4/C H4FC HIST1H4H Gene View H4/H H4FH HIST1H4I Gene View H4/M H4FM HIST1H4J Gene View H4/E H4FE HIST1H4K Gene View H4/D H4FD HIST1H4L Gene View H4/K H4FK HIST2H4A Gene View H4/N H4F2 H4FN HIST2H4 HIST2H4B Gene View H4/O H4FO HIST4H4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Death domain-associated protein 6 E, F 216 Homo sapiens Fragment: UNP residues 178-389
Gene Name(s): DAXX Gene View BING2 DAP6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

C, D, E, F PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.195
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.40 α = 90.00
b = 99.17 β = 90.00
c = 100.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-24
  • Released Date: 2012-10-17
  • Deposition author(s): Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

Revision History

No revisions since initial release