4H7Z

tRNA-guanine transglycosylase Y106F, C158V mutant in complex with guanine

Structural Biology Knowledgebase: 4H7Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.157

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H7Z

Classification: TRANSFERASE

Total Structure Weight: 43398.84

Macromolecule Entities
Molecule Chains Length Organism Details
Queuine tRNA-ribosyltransferase A 386 Zymomonas mobilis EC#: 2.4.2.29 IUBMB
Mutation: Y106F, C158V, T312K
Gene Name(s): tgt ZMO0363

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GUN
Query on GUN

A GUANINE
C5 H5 N5 O
UYTPUPDQBNUYGX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.157
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 90.39 α = 90.00
b = 64.75 β = 95.60
c = 70.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-21
  • Released Date: 2012-10-10
  • Deposition author(s): Biela, I., Tidten-Luksch, N., Heine, A., Reuter, K., Klebe, G.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update