4GZY

Crystal structures of bacterial RNA Polymerase paused elongation complexes

Structural Biology Knowledgebase: 4GZY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.322
  • R-Value Work: 0.263

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GZY

Classification: TRANSCRIPTION / DNA / RNA

Total Structure Weight: 399532.53


Macromolecule Entities
Molecule Chains Length Organism Details
DNA-directed RNA polymerase subunit alpha A, B 315 Thermus thermophilus EC#: 2.7.7.6 IUBMB
Gene Name(s): rpoA TTHA1664
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-directed RNA polymerase subunit beta C 1119 Thermus thermophilus EC#: 2.7.7.6 IUBMB
Gene Name(s): rpoB TTHA1813
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-directed RNA polymerase subunit beta' D 1534 Thermus thermophilus EC#: 2.7.7.6 IUBMB
Gene Name(s): rpoC TTHA1812
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-directed RNA polymerase subunit omega E 99 Thermus thermophilus EC#: 2.7.7.6 IUBMB
Gene Name(s): rpoZ TTHA1561
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
non-template DNA N 13 Synthetic construct
RNA transcript R 29 Synthetic construct
template DNA T 22 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.322
  • R-Value Work: 0.263
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 207.21 α = 90.00
b = 207.21 β = 90.00
c = 203.22 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-06
  • Released Date: 2013-02-13
  • Deposition author(s): Weixlbaumer, A., Leon, K., Landick, R., Darst, S.A.

Revision History

No revisions since initial release