4GAY

Structure of the broadly neutralizing antibody AP33

Structural Biology Knowledgebase: 4GAY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 4GAY

Classification: IMMUNE SYSTEM

Total Structure Weight: 95498.55

Macromolecule Entities
Molecule Chains Length Organism Details
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN A, H 218 Mus musculus Fragment: Fab fragment of AP33 heavy chain
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN B, L 218 Mus musculus Fragment: Fab fragment of AP33 light chain

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A, B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.243
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.87 α = 90.00
b = 90.87 β = 90.00
c = 459.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-26
  • Released Date: 2012-10-10
  • Deposition author(s): Potter, J.A., Owsianka, A., Jeffery, N., Matthews, D., Keck, Z., Lau, P., Foung, S.K.H., Taylor, G.L., Patel, A.H.

Revision History

  • 2012-11-21
    Type: Citation | Details: Citation update