4G0N

Crystal Structure of wt H-Ras-GppNHp bound to the RBD of Raf Kinase

Structural Biology Knowledgebase: 4G0N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G0N

Classification: PROTEIN BINDING / TRANSFERASE

Total Structure Weight: 28605.74

Macromolecule Entities
Molecule Chains Length Organism Details
GTPase HRas A 166 Homo sapiens Fragment: UNP residues 1-166
Gene Name(s): HRAS Gene View HRAS1
RAF proto-oncogene serine/threonine-protein kinase B 78 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 54-131
Gene Name(s): RAF1 Gene View RAF

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DTU
Query on DTU

A (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
C4 H10 O2 S2
VHJLVAABSRFDPM-ZXZARUISSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.181
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.44 α = 90.00
b = 90.44 β = 90.00
c = 92.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-09
  • Released Date: 2013-07-17
  • Deposition author(s): Fetics, S.K., Kearney, B.M., Buhrman, G., Mattos, C.

Revision History

  • 2015-03-11
    Type: Citation | Details: Citation update