4FSL

Crystal structure of beta-site app-cleaving enzyme 1 (BACE-DB-MUT) complex with N-(N-(4- acetamido-3-chloro-5-methylbenzyl)carbamimidoyl)-3-(4- methoxyphenyl)-5-methyl-4-isothiazolecarboxamide

Structural Biology Knowledgebase: 4FSL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 4FSL

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 187162.94

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A, B, D, E 412 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 43-453
Mutation: R43K, R44K
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0VB
Query on 0VB

A, B, D, E N-{N-[4-(acetylamino)-3-chloro-5-methylbenzyl]carbamimidoyl}- 3-(4-methoxyphenyl)-5-methyl-1,2-thiazole- 4-carboxamide
C23 H24 Cl N5 O3 S
MQPJKTGBSCCWTI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B, D, E IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0VB N/A in BindingDB
N/A in BindingMoad
Ki: 20 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.54 α = 90.00
b = 131.18 β = 97.61
c = 90.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-27
  • Released Date: 2012-10-10
  • Deposition author(s): Muckelbauer, J.K.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update