4F4W

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1

Structural Biology Knowledgebase: 4F4W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 4F4W

Classification: TRANSFERASE / DNA

Total Structure Weight: 102315.44


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase IV A, B 361 Sulfolobus acidocaldarius Sulfolobus solfataricus EC#: 2.7.7.7 IUBMB
Gene Name(s): dbh Saci_0554 dpo4 SSO2448
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*C)-3') E, P 13 synthetic Primer DNA
DNA (5'-D(*TP*TP*AP*CP*GP*GP*CP*CP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3') F, T 18 synthetic Template DNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCP
Query on DCP

A, B 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
RGWHQCVHVJXOKC-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.186
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.82 α = 90.00
b = 99.65 β = 90.16
c = 101.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-11
  • Released Date: 2013-01-02
  • Deposition author(s): Pata, J.D., Wilson, R.C.

Revision History

  • 2014-02-12
    Type: Source and taxonomy | Details: update Source information
  • 2014-01-29
    Type: Source and taxonomy | Details: update Source information
  • 2013-02-13
    Type: Citation | Details: Citation update