4E6X

ClbP in complex boron-based inhibitor

Structural Biology Knowledgebase: 4E6X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E6X

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 111273.98

Macromolecule Entities
Molecule Chains Length Organism Details
ClbP peptidase A, B, C 336 Escherichia coli EC#: 3.5.2.6 IUBMB
Fragment: UNP residues 41-376
Gene Name(s): c2452
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0NG
Query on 0NG

B, C ({[(chloromethyl)sulfonyl]amino}methyl)boronic acid
C2 H7 B Cl N O4 S
DYDOICABPAYWAK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.05 α = 90.00
b = 152.53 β = 123.43
c = 86.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-16
  • Released Date: 2013-03-27
  • Deposition author(s): Cougnoux, A., Delmas, J., Bonnet, R.

Revision History

No revisions since initial release