4DVB

The crystal structure of the Fab fragment of pro-uPA antibody mAb-112

Structural Biology Knowledgebase: 4DVB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 4DVB

Classification: IMMUNE SYSTEM

Total Structure Weight: 94075.02

Macromolecule Entities
Molecule Chains Length Organism Details
Fab fragment of pro-uPA antibody mAb-112 A, H 213 Mus musculus
Fab fragment of pro-uPA antibody mAb-112 B, L 215 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

H TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, H, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.223
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.18 α = 90.00
b = 86.63 β = 90.00
c = 155.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-23
  • Released Date: 2013-01-16
  • Deposition author(s): Jiang, L., Botkjaer, K.A., Andersen, L.M., Yuan, C., Andreasen, P.A., Huang, M.

Revision History

No revisions since initial release