4DRF

Crystal Structure of Bacterial Pnkp-C/Hen1-N Heterodimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 4DRF

Classification: PROTEIN BINDING TRANSFERASE

Total Structure Weight: 150330.89

Macromolecule Entities
Molecule Chains Length Organism Details
Metallophosphoesterase A, C 427 Ruminiclostridium thermocellum Fragment: C-terminal half of bacterial Pnkp
Gene Name(s): Cthe_2768
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Methyltransferase type 12 B, D 230 Ruminiclostridium thermocellum Fragment: N-terminal half of bacterial Hen1
Gene Name(s): Cthe_2767
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 59.67 α = 81.27
b = 59.71 β = 87.67
c = 101.54 γ = 88.39

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2012-08-01
  • Deposition author(s): Huang, R.H., Wang, P.

Revision History

  • Version 1_0: 2012-08-01

    Type: Initial release

  • Version 1_1: 2012-08-15

    Type: Database references

  • Version 1_2: 2012-08-29

    Type: Database references

  • Version 1_3: 2017-11-15

    Type: Refinement description