4DOY

Crystal structure of Dibenzothiophene desulfurization enzyme C

Structural Biology Knowledgebase: 4DOY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DOY

Classification: Oxidoreductase

Total Structure Weight: 379171.59

Macromolecule Entities
Molecule Chains Length Organism Details
Dibenzothiophene desulfurization enzyme C A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 437 Rhodococcus sp. xp EC#: 1.14.14.1 IUBMB
Gene Name(s): dszC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D, E, F, G, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.168
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.52 α = 98.46
b = 98.82 β = 106.99
c = 111.46 γ = 107.07

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-12
  • Released Date: 2013-02-13
  • Deposition author(s): Liu, S., Zhang, C., Zhu, D., Gu, L.

Revision History

  • 2014-12-24
    Type: Citation | Details: Citation update
  • 2014-03-12
    Type: Citation | Details: Citation update