4DL0

Crystal Structure of the heterotrimeric EGChead Peripheral Stalk Complex of the Yeast Vacuolar ATPase

Structural Biology Knowledgebase: 4DL0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DL0

Classification: HYDROLASE

Total Structure Weight: 109900.34

Macromolecule Entities
Molecule Chains Length Organism Details
V-type proton ATPase subunit C C, I 130 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Fragment: C subunit head domain, UNP residues 158-277
Gene Name(s): VMA5 VAT3 VATC YKL080W YKL410
V-type proton ATPase subunit G G, K 119 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Gene Name(s): VMA10 YHR039C-A YHR039BC YHR039C-B
V-type proton ATPase subunit E E, J 233 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Gene Name(s): VMA4 VAT5 YOR332W O6241

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Vacuolar ATPase (V-ATPase)

Protein Name: Heterotrimeric EGChead Peripheral Stalk Complex


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PBM
Query on PBM

E, J TRIMETHYL LEAD ION
C3 H9 Pb
SNBFOEGVGALPSE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C, G, I, K SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 95.79 α = 90.00
b = 105.61 β = 90.00
c = 120.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-05
  • Released Date: 2012-10-10
  • Deposition author(s): Oot, R.A., Huang, L.S., Berry, E.A., Wilkens, S

Revision History

  • 2012-11-28
    Type: Citation | Details: Citation update