4DKY

Crystal structure Analysis of N terminal region containing the dimerization domain and DNA binding domain of HU protein(Histone like protein-DNA binding) from Mycobacterium tuberculosis [H37Rv]

Structural Biology Knowledgebase: 4DKY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DKY

Classification: DNA BINDING PROTEIN

Total Structure Weight: 23306.53

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-binding protein HU homolog A, B 106 Mycobacterium tuberculosis Fragment: N-terminal Bacterial histone-like domain, UNP residues 1-100
Gene Name(s): hup hlp hupB lbp21 Rv2986c MTCY349.01
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.183
  • Space Group: P 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.12 α = 90.00
b = 37.05 β = 115.29
c = 64.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-05
  • Released Date: 2013-02-06
  • Deposition author(s): Bhowmick, T., Ramagopal, U.A., Ghosh, S., Nagaraja, V., Ramakumar, S.

Revision History

  • 2014-08-27
    Type: Citation | Details: Citation update