4C2T

Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA

Structural Biology Knowledgebase: 4C2T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.246

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C2T

Classification: HYDROLASE / DNA

Total Structure Weight: 367251.09


Macromolecule Entities
Molecule Chains Length Organism Details
DNA HELICASE II A, B, C, D 745 Deinococcus radiodurans EC#: 3.6.4.12 IUBMB
Gene Name(s): DR_1775
Macromolecule Entities
Molecule Chains Length Organism Details
DNA STRAND FOR28 M, P 28 Synthetic construct
DNA STRAND REV28 N, O 28 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.246
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 71.46 α = 90.00
b = 390.04 β = 106.13
c = 71.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-20
  • Released Date: 2013-10-30
  • Deposition author(s): Stelter, M., Acajjaoui, S., McSweeney, S., Timmins, J.

Revision History

No revisions since initial release