4BER

Crystal structure of the Legionella pneumophila FIC domain-containing effector AnkX protein in complex with cytidine monophosphate

Structural Biology Knowledgebase: 4BER SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BER

Classification: TRANSFERASE

Total Structure Weight: 110898.98

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOCHOLINE TRANSFERASE ANKX A, B 484 Legionella pneumophila EC#: 2.7.1 IUBMB
Fragment: FIC AND ANKYRIN REPEATS DOMAINS, RESIDUES 2-484
Mutation: L247P
Gene Name(s): ankX legA8 lpg0695
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C5P
Query on C5P

A, B CYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O8 P
IERHLVCPSMICTF-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.206
  • Space Group: P 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.33 α = 90.00
b = 103.56 β = 90.00
c = 224.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-12
  • Released Date: 2013-04-24
  • Deposition author(s): Campanacci, V., Mukherjee, S., Roy, C.R., Cherfils, J.

Revision History

  • 2013-05-29
    Type: Citation | Details: JRNL