4AD6

Synthesis and SAR of guanine based analogues for HPPK inhibitors

Structural Biology Knowledgebase: 4AD6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AD6

Classification: TRANSFERASE

Total Structure Weight: 37062.94

Macromolecule Entities
Molecule Chains Length Organism Details
7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE A, B 161 Staphylococcus aureus EC#: 2.7.6.3 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSY
Query on GSY

A, B 7-(2-HYDROXYETHYL)-8-MERCAPTOGUANINE
C7 H9 N5 O2 S
OYFBJNRCXXDVIZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GSY N/A in BindingDB
Kd: 16700 nM  BindingMOAD
Kd: 16700 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.208
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.59 α = 90.00
b = 75.71 β = 99.71
c = 51.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-22
  • Released Date: 2013-01-16
  • Deposition author(s): Chhabra, S., Peat, T.S., Swarbrick, J.

Revision History

  • 2014-02-05
    Type: Citation | Details: JRNL