4ABU

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-2

Structural Biology Knowledgebase: 4ABU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ABU

Classification: TRANSPORT PROTEIN

Total Structure Weight: 27410.38

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSTHYRETIN A, B 124 Homo sapiens Fragment: RESIDUES 21-144
Gene Name(s): TTR Gene View PALB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FT1
Query on FT1

A, B 4-(2,4-dichlorophenoxy)-3-hydroxybenzaldehyde
C13 H8 Cl2 O3
GKHZEXMYTPRFKV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FT1 IC50: 520 nM (100) BindingDB
Kd: 13.9 nM (100) BindingDB

IC50: 520 nM  BindingMOAD
IC50: 520 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.206
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.60 α = 90.00
b = 42.47 β = 90.00
c = 63.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-11
  • Released Date: 2012-09-26
  • Deposition author(s): Tomar, D., Khan, T., Singh, R.R., Mishra, S., Gupta, S., Surolia, A., Salunke, D.M.

Revision History

No revisions since initial release