3ZTD

pVHL54-213-EloB-EloC complex _ methyl 4-(((2S,4R)-4-hydroxy-1-(2-(3- methylisoxazol-5-yl)acetyl)pyrrolidine-2-carboxamido)methyl)benzoate

Structural Biology Knowledgebase: 3ZTD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZTD

Classification: TRANSCRIPTION

Total Structure Weight: 172905.88

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 A, D, G, J 118 Homo sapiens Gene Name(s): TCEB2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 B, E, H, K 97 Homo sapiens Gene Name(s): TCEB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR C, F, I, L 162 Homo sapiens Fragment: RESIDUES 54-213
Gene Name(s): VHL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZTD
Query on ZTD

C, F, I, L METHYL 4-[({(4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL- 5-YL)ACETYL]-L-PROLYL}AMINO)METHYL]BENZOATE
C20 H23 N3 O6
HMFSOBWOOWBCBL-WBVHZDCISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZTD N/A in BindingDB
N/A in BindingMoad
Kd: 96200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.224
  • Space Group: P 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.08 α = 90.00
b = 94.08 β = 90.00
c = 366.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-07
  • Released Date: 2012-07-25
  • Deposition author(s): Vanmolle, I., Buckley, D.L., Crews, C.M., Ciulli, A.

Revision History

  • 2012-11-14
    Type: Citation | Details: JRNL
  • 2012-11-14
    Type: Entry authorship | Details: AUTHOR