3ZJX

Clostridium perfringens epsilon toxin mutant H149A bound to octyl glucoside

Structural Biology Knowledgebase: 3ZJX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 3ZJX

Classification: TOXIN

Total Structure Weight: 129889.55

Macromolecule Entities
Molecule Chains Length Organism Details
EPSILON-TOXIN A, B, C, D 289 Clostridium perfringens Mutation: H162A
Gene Name(s): etx
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

A, B, C, D B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247
  • Space Group: P 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.71 α = 90.00
b = 123.71 β = 90.00
c = 127.31 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-20
  • Released Date: 2013-03-27
  • Deposition author(s): Bokori-Brown, M., Kokkinidou, M.C., Savva, C.G., Fernandes da Costa, S.P., Naylor, C.E., Cole, A.R., Basak, A.K., Titball, R.W.

Revision History

  • 2015-04-01
    Type: Data collection | Details: REMARK 200
  • 2013-05-08
    Type: Citation | Details: JRNL