3ZCW

Eg5 - New allosteric binding site

Structural Biology Knowledgebase: 3ZCW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZCW

Classification: CELL CYCLE

Total Structure Weight: 40522.14

Macromolecule Entities
Molecule Chains Length Organism Details
KINESIN-LIKE PROTEIN KIF11 A 348 Homo sapiens Fragment: MOTOR DOMAIN, RESIDUES 16-363
Gene Name(s): KIF11 Gene View EG5 KNSL1 TRIP5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4A2
Query on 4A2

A (2E)-2-(3-fluoranyl-4-methoxy-phenyl)imino- 1-[[2-(trifluoromethyl)phenyl]methyl]-3H- benzimidazole-5-carboxylic acid
C23 H17 F4 N3 O3
KSDBWRGNYBMBEZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4A2 IC50: 2300 nM (100) BindingDB

Kd: 470 nM  BindingMOAD
Kd: 650 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.194
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.94 α = 90.00
b = 62.89 β = 117.46
c = 75.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-23
  • Released Date: 2013-01-23
  • Deposition author(s): Ulaganathan, V., Talapatra, S.K., Kozielski, F., Pannifer, A.D.

Revision History

  • 2013-02-27
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Entry title | Details: TITLE