3W6V

Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA

Structural Biology Knowledgebase: 3W6V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W6V

Classification: TRANSCRIPTION ACTIVATOR / DNA

Total Structure Weight: 26542.37


Macromolecule Entities
Molecule Chains Length Organism Details
AdpA A 147 Streptomyces griseus Fragment: DNA-binding domain, residues 215-340
Gene Name(s): adpA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*TP*GP*TP*GP*AP*AP*CP*CP*CP*GP*CP*CP*AP*AP*C)-3') B 16 synthetic
DNA (5'-D(*AP*GP*GP*TP*TP*GP*GP*CP*GP*GP*GP*TP*TP*CP*AP*C)-3') C 16 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.236
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.51 α = 90.00
b = 100.64 β = 90.00
c = 100.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-22
  • Released Date: 2013-09-18
  • Deposition author(s): Yao, M.D., Ohtsuka, J., Nagata, K., Miyazono, K., Ohnishi, Y., Tanokura, M.

Revision History

  • 2013-11-20
    Type: Citation | Details: Citation update