3VS9

Crystal structure of type III PKS ArsC mutant

Structural Biology Knowledgebase: 3VS9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VS9

Classification: TRANSFERASE

Total Structure Weight: 363866.94

Macromolecule Entities
Molecule Chains Length Organism Details
Type III polyketide synthase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 410 Azotobacter vinelandii EC#: 2.3.1.74 IUBMB
Gene Name(s): arsC Avin_29530
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, B, C, D, E, F, G, H TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D, E, F, G, H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.205
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.92 α = 90.00
b = 142.72 β = 110.43
c = 129.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-23
  • Released Date: 2013-04-24
  • Deposition author(s): Satou, R., Miyanaga, A., Ozawa, H., Funa, N., Miyazono, K., Tanokura, M., Ohnishi, Y., Horinouchi, S.

Revision History

  • 2014-04-30
    Type: Citation | Details: Citation update
  • 2013-10-23
    Type: Citation | Details: Citation update