3V2Q

COMPcc in complex with fatty acids

Structural Biology Knowledgebase: 3V2Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V2Q

Classification: PROTEIN BINDING

Total Structure Weight: 26723.39

Macromolecule Entities
Molecule Chains Length Organism Details
Cartilage Oligomerization matrix protein (coiled-coil domain) A, B, C, D, E 45 Mus musculus Details: COMPcc
Gene Name(s): Comp

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLM
Query on PLM

A, E PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PLM N/A in BindingDB
Kd: 220 nM  BindingMOAD
Kd: 510 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.209
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 38.70 α = 90.00
b = 48.57 β = 103.82
c = 53.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-12
  • Released Date: 2013-01-16
  • Deposition author(s): Stetefeld, J.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update