3USF

Crystal structure of DAVA-4

Structural Biology Knowledgebase: 3USF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3USF

Classification: ISOMERASE

Total Structure Weight: 91775.40

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate-1-semialdehyde 2,1-aminomutase A, B 427 Synechococcus elongatus EC#: 5.4.3.8 IUBMB
Fragment: UNP residues 7-433
Mutation: I1108N, L1133I, D1172S, S1179K, A1187T
Gene Name(s): hemL Synpcc7942_0645

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLR
Query on PLR

A, B (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
4'-DEOXYPYRIDOXINE PHOSPHATE (Synonym)
C8 H12 N O5 P
RBCOYOYDYNXAFA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HOZ
Query on HOZ

A (4S)-4,5-DIAMINOPENTANOIC ACID
C5 H12 N2 O2
PQGAAJQIFBEYSA-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.178
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.58 α = 90.00
b = 108.78 β = 90.00
c = 124.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-23
  • Released Date: 2012-12-05
  • Deposition author(s): Stetefeld, J.

Revision History

No revisions since initial release